RNA–Protein interactions for RNA: ENST00000495090.6

SYNE1-230, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best) BASIC

Gene SYNE1, Length 1,907 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-230ENST00000495090 PLCL1Q15111 1095 aa9.68□□□□□ -0.86
SYNE1-230ENST00000495090 KCNJ8Q15842 424 aa9.68□□□□□ -0.86
SYNE1-230ENST00000495090 KIF19Q2TAC6 998 aa9.68□□□□□ -0.86
SYNE1-230ENST00000495090 EFCAB12Q6NXP0 572 aa9.68□□□□□ -0.86
SYNE1-230ENST00000495090 CRTC3Q6UUV7 619 aa9.68□□□□□ -0.86
SYNE1-230ENST00000495090 PLEKHG7Q6ZR37 379 aa9.68□□□□□ -0.86
SYNE1-230ENST00000495090 CATSPERGQ6ZRH7 1159 aa9.68□□□□□ -0.86
SYNE1-230ENST00000495090 SLC16A12Q6ZSM3 486 aa9.68□□□□□ -0.86
SYNE1-230ENST00000495090 PHYKPLQ8IUZ5 450 aa9.68□□□□□ -0.86
SYNE1-230ENST00000495090 NETO2Q8NC67 525 aa9.68□□□□□ -0.86
SYNE1-230ENST00000495090 GABPB2Q8TAK5 448 aaPredicted RBP9.68□□□□□ -0.86
SYNE1-230ENST00000495090 TRIB2Q92519 343 aa9.68□□□□□ -0.86
SYNE1-230ENST00000495090 WNT8BQ93098 351 aa9.68□□□□□ -0.86
SYNE1-230ENST00000495090 KIF12Q96FN5 646 aa9.68□□□□□ -0.86
SYNE1-230ENST00000495090 LRCH3Q96II8 777 aa9.68□□□□□ -0.86
SYNE1-230ENST00000495090 MUS81Q96NY9 551 aa9.68□□□□□ -0.86
SYNE1-230ENST00000495090 SLC30A3Q99726 388 aa9.68□□□□□ -0.86
SYNE1-230ENST00000495090 FUNDC2Q9BWH2 189 aa9.68□□□□□ -0.86
SYNE1-230ENST00000495090 ING2Q9H160 280 aa9.68□□□□□ -0.86
SYNE1-230ENST00000495090 ALG2Q9H553 416 aa9.68□□□□□ -0.86
SYNE1-230ENST00000495090 AKTIPQ9H8T0 292 aa9.68□□□□□ -0.86
SYNE1-230ENST00000495090 PLEKHA5Q9HAU0 1116 aa9.68□□□□□ -0.86
SYNE1-230ENST00000495090 SLC52A3Q9NQ40 469 aa9.68□□□□□ -0.86
SYNE1-230ENST00000495090 TMEM45AQ9NWC5 275 aa9.68□□□□□ -0.86
SYNE1-230ENST00000495090 ZNF219Q9P2Y4 722 aaPredicted RBP9.68□□□□□ -0.86
SYNE1-230ENST00000495090 DNMT3BQ9UBC3 853 aaKnown RBP9.68□□□□□ -0.86
SYNE1-230ENST00000495090 KLHL3Q9UH77 587 aa9.68□□□□□ -0.86
SYNE1-230ENST00000495090 PCDHGA11Q9Y5H2 935 aa9.68□□□□□ -0.86
SYNE1-230ENST00000495090 NRCAMQ92823 1304 aa9.68□□□□□ -0.86
SYNE1-230ENST00000495090 TSC2P49815 1807 aa9.68□□□□□ -0.86
SYNE1-230ENST00000495090 FAM47E-STBD1D6RA91 191 aa9.68□□□□□ -0.86
SYNE1-230ENST00000495090 UBFD1O14562 309 aaKnown RBP9.68□□□□□ -0.86
SYNE1-230ENST00000495090 SLC22A1O15245 554 aa9.68□□□□□ -0.86
SYNE1-230ENST00000495090 MGEA5O60502 916 aa9.68□□□□□ -0.86
SYNE1-230ENST00000495090 VPS4BO75351 444 aa9.68□□□□□ -0.86
SYNE1-230ENST00000495090 GABARAPO95166 117 aa9.68□□□□□ -0.86
SYNE1-230ENST00000495090 NPPAP01160 153 aa9.68□□□□□ -0.86
SYNE1-230ENST00000495090 GJB1P08034 283 aa9.68□□□□□ -0.86
SYNE1-230ENST00000495090 THRBP10828 461 aa9.68□□□□□ -0.86
SYNE1-230ENST00000495090 ELK4P28324 431 aa9.68□□□□□ -0.86
SYNE1-230ENST00000495090 SHMT2P34897 504 aa9.68□□□□□ -0.86
SYNE1-230ENST00000495090 PCYT1AP49585 367 aa9.68□□□□□ -0.86
SYNE1-230ENST00000495090 PGGT1BP53609 377 aa9.68□□□□□ -0.86
SYNE1-230ENST00000495090 TPI1P60174 286 aa9.68□□□□□ -0.86
SYNE1-230ENST00000495090 CD300CQ08708 224 aa9.68□□□□□ -0.86
SYNE1-230ENST00000495090 CDC20Q12834 499 aa9.68□□□□□ -0.86
SYNE1-230ENST00000495090 AQP6Q13520 282 aa9.68□□□□□ -0.86
SYNE1-230ENST00000495090 DAG1Q14118 895 aa9.68□□□□□ -0.86
SYNE1-230ENST00000495090 SPCS2Q15005 226 aa9.68□□□□□ -0.86
SYNE1-230ENST00000495090 VPS26BQ4G0F5 336 aa9.68□□□□□ -0.86
SYNE1-230ENST00000495090 ZNF484Q5JVG2 852 aa9.68□□□□□ -0.86
SYNE1-230ENST00000495090 ZNF678Q5SXM1 525 aa9.68□□□□□ -0.86
SYNE1-230ENST00000495090 TTC23Q5W5X9 447 aa9.68□□□□□ -0.86
SYNE1-230ENST00000495090 IQSEC1Q6DN90 963 aa9.68□□□□□ -0.86
SYNE1-230ENST00000495090 BLOC1S3Q6QNY0 202 aa9.68□□□□□ -0.86
SYNE1-230ENST00000495090 CHST15Q7LFX5 561 aaPredicted RBP9.68□□□□□ -0.86
SYNE1-230ENST00000495090 C8orf59Q8N0T1 100 aaPredicted RBP9.68□□□□□ -0.86
SYNE1-230ENST00000495090 SPATA6LQ8N4H0 392 aa9.68□□□□□ -0.86
SYNE1-230ENST00000495090 OR6B3Q8NGW1 331 aa9.68□□□□□ -0.86
SYNE1-230ENST00000495090 GJD4Q96KN9 370 aaPredicted RBP9.68□□□□□ -0.86
SYNE1-230ENST00000495090 KCTD14Q9BQ13 255 aaPredicted RBP9.68□□□□□ -0.86
SYNE1-230ENST00000495090 TBL1YQ9BQ87 522 aa9.68□□□□□ -0.86
SYNE1-230ENST00000495090 APOL2Q9BQE5 337 aa9.68□□□□□ -0.86
SYNE1-230ENST00000495090 PRKD2Q9BZL6 878 aa9.68□□□□□ -0.86
SYNE1-230ENST00000495090 FBRSL1Q9HCM7 1045 aaKnown RBP9.68□□□□□ -0.86
SYNE1-230ENST00000495090 CYP4F12Q9HCS2 524 aa9.68□□□□□ -0.86
SYNE1-230ENST00000495090 TREX1Q9NSU2 369 aa9.68□□□□□ -0.86
SYNE1-230ENST00000495090 THG1LQ9NWX6 298 aaKnown RBP9.68□□□□□ -0.86
SYNE1-230ENST00000495090 HOXC10Q9NYD6 342 aa9.68□□□□□ -0.86
SYNE1-230ENST00000495090 MTRRQ9UBK8 725 aa9.68□□□□□ -0.86
SYNE1-230ENST00000495090 SUN2Q9UH99 717 aa9.68□□□□□ -0.86
SYNE1-230ENST00000495090 FBXO5Q9UKT4 447 aa9.68□□□□□ -0.86
SYNE1-230ENST00000495090 IFT52Q9Y366 437 aa9.68□□□□□ -0.86
SYNE1-230ENST00000495090 RALGAPA2Q2PPJ7 1873 aa9.67□□□□□ -0.86
SYNE1-230ENST00000495090 A0A1W2PP18 115 aa9.67□□□□□ -0.86
SYNE1-230ENST00000495090 GRXCR2A6NFK2 248 aa9.67□□□□□ -0.86
SYNE1-230ENST00000495090 M0QYT0 321 aa9.67□□□□□ -0.86
SYNE1-230ENST00000495090 MSI1O43347 362 aaKnown RBP9.67□□□□□ -0.86
SYNE1-230ENST00000495090 DEAF1O75398 565 aaPredicted RBP9.67□□□□□ -0.86
SYNE1-230ENST00000495090 ANXA9O76027 345 aa9.67□□□□□ -0.86
SYNE1-230ENST00000495090 KCNH1O95259 989 aa9.67□□□□□ -0.86
SYNE1-230ENST00000495090 ALPLP05186 524 aa9.67□□□□□ -0.86
SYNE1-230ENST00000495090 CDH1P12830 882 aa9.67□□□□□ -0.86
SYNE1-230ENST00000495090 ARF4P18085 180 aaPredicted RBP9.67□□□□□ -0.86
SYNE1-230ENST00000495090 PTPRAP18433 802 aa9.67□□□□□ -0.86
SYNE1-230ENST00000495090 ADORA2BP29275 332 aa9.67□□□□□ -0.86
SYNE1-230ENST00000495090 CLCN3P51790 818 aa9.67□□□□□ -0.86
SYNE1-230ENST00000495090 RAD23AP54725 363 aa9.67□□□□□ -0.86
SYNE1-230ENST00000495090 CTF1Q16619 201 aa9.67□□□□□ -0.86
SYNE1-230ENST00000495090 FSCN1Q16658 493 aaKnown RBP9.67□□□□□ -0.86
SYNE1-230ENST00000495090 PRR23BQ6ZRT6 265 aa9.67□□□□□ -0.86
SYNE1-230ENST00000495090 R3HCC1LQ7Z5L2 792 aaKnown RBP9.67□□□□□ -0.86
SYNE1-230ENST00000495090 PIGZQ86VD9 579 aa9.67□□□□□ -0.86
SYNE1-230ENST00000495090 LACC1Q8IV20 430 aa9.67□□□□□ -0.86
SYNE1-230ENST00000495090 RIMKLAQ8IXN7 391 aa9.67□□□□□ -0.86
SYNE1-230ENST00000495090 MFSD4AQ8N468 514 aa9.67□□□□□ -0.86
SYNE1-230ENST00000495090 NPWQ8N729 165 aa9.67□□□□□ -0.86
SYNE1-230ENST00000495090 CALML6Q8TD86 181 aa9.67□□□□□ -0.86
SYNE1-230ENST00000495090 KCTD13Q8WZ19 329 aa9.67□□□□□ -0.86
SYNE1-230ENST00000495090 HPS1Q92902 700 aa9.67□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 77.9 ms