RNA–Protein interactions for RNA: ENST00000472044.1

PTCD3-209, Transcript of pentatricopeptide repeat domain 3, human

TSL 3

Gene PTCD3, Length 293 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTCD3-209	ENST00000472044	FAM90A10P	A6NDY2	464 aa		3.88	□□□□□ -1.79
PTCD3-209	ENST00000472044	CD8B2	A6NJW9	211 aa		3.88	□□□□□ -1.79
PTCD3-209	ENST00000472044	BTBD18	B2RXH4	712 aa		3.88	□□□□□ -1.79
PTCD3-209	ENST00000472044	CRYAB	P02511	175 aa	Known RBP	3.88	□□□□□ -1.79
PTCD3-209	ENST00000472044	CYC1	P08574	325 aa		3.88	□□□□□ -1.79
PTCD3-209	ENST00000472044	TMEM11	P17152	192 aa		3.88	□□□□□ -1.79
PTCD3-209	ENST00000472044	GABRB1	P18505	474 aa		3.88	□□□□□ -1.79
PTCD3-209	ENST00000472044	MCM3	P25205	808 aa		3.88	□□□□□ -1.79
PTCD3-209	ENST00000472044	ARRB2	P32121	409 aa		3.88	□□□□□ -1.79
PTCD3-209	ENST00000472044	RPL3	P39023	403 aa	Known RBP	3.88	□□□□□ -1.79
PTCD3-209	ENST00000472044	CLCN3	P51790	818 aa		3.88	□□□□□ -1.79
PTCD3-209	ENST00000472044	ECT2L	Q008S8	904 aa		3.88	□□□□□ -1.79
PTCD3-209	ENST00000472044	TRAF2	Q12933	501 aa		3.88	□□□□□ -1.79
PTCD3-209	ENST00000472044	GRIK2	Q13002	908 aa		3.88	□□□□□ -1.79
PTCD3-209	ENST00000472044	CHAF1B	Q13112	559 aa		3.88	□□□□□ -1.79
PTCD3-209	ENST00000472044	NAB2	Q15742	525 aa		3.88	□□□□□ -1.79
PTCD3-209	ENST00000472044	EFNB3	Q15768	340 aa		3.88	□□□□□ -1.79
PTCD3-209	ENST00000472044	ASTE1	Q2TB18	679 aa	Predicted RBP	3.88	□□□□□ -1.79
PTCD3-209	ENST00000472044	MMEL1	Q495T6	779 aa		3.88	□□□□□ -1.79
PTCD3-209	ENST00000472044	RILPL1	Q5EBL4	403 aa		3.88	□□□□□ -1.79
PTCD3-209	ENST00000472044	EFHC1	Q5JVL4	640 aa		3.88	□□□□□ -1.79
PTCD3-209	ENST00000472044	CRELD2	Q6UXH1	353 aa	Predicted RBP	3.88	□□□□□ -1.79
PTCD3-209	ENST00000472044	CFAP77	Q6ZQR2	320 aa		3.88	□□□□□ -1.79
PTCD3-209	ENST00000472044	DPPA4	Q7L190	304 aa		3.88	□□□□□ -1.79
PTCD3-209	ENST00000472044	CACNA2D4	Q7Z3S7	1137 aa		3.88	□□□□□ -1.79
PTCD3-209	ENST00000472044	CCDC13	Q8IYE1	715 aa		3.88	□□□□□ -1.79
PTCD3-209	ENST00000472044	OR14L1P	Q8NHC6	308 aa		3.88	□□□□□ -1.79
PTCD3-209	ENST00000472044	ACOX2	Q99424	681 aa		3.88	□□□□□ -1.79
PTCD3-209	ENST00000472044	NUDT16L1	Q9BRJ7	211 aa	Known RBP	3.88	□□□□□ -1.79
PTCD3-209	ENST00000472044	SLC25A33	Q9BSK2	321 aa		3.88	□□□□□ -1.79
PTCD3-209	ENST00000472044	HAUS8	Q9BT25	410 aa		3.88	□□□□□ -1.79
PTCD3-209	ENST00000472044	SF3B5	Q9BWJ5	86 aa	Known RBP	3.88	□□□□□ -1.79
PTCD3-209	ENST00000472044	FTO	Q9C0B1	505 aa	Known RBP eCLIP	3.88	□□□□□ -1.79
PTCD3-209	ENST00000472044	TMX4	Q9H1E5	349 aa	Predicted RBP	3.88	□□□□□ -1.79
PTCD3-209	ENST00000472044	MAGIX	Q9H6Y5	334 aa		3.88	□□□□□ -1.79
PTCD3-209	ENST00000472044	MMP25	Q9NPA2	562 aa		3.88	□□□□□ -1.79
PTCD3-209	ENST00000472044	SUCLA2	Q9P2R7	463 aa	Predicted RBP	3.88	□□□□□ -1.79
PTCD3-209	ENST00000472044	RNF7	Q9UBF6	113 aa		3.88	□□□□□ -1.79
PTCD3-209	ENST00000472044	ADD3	Q9UEY8	706 aa	Known RBP	3.88	□□□□□ -1.79
PTCD3-209	ENST00000472044	INSL5	Q9Y5Q6	135 aa		3.88	□□□□□ -1.79
PTCD3-209	ENST00000472044	ARHGEF40	Q8TER5	1519 aa		3.88	□□□□□ -1.79
PTCD3-209	ENST00000472044	PASK	Q96RG2	1323 aa		3.88	□□□□□ -1.79
PTCD3-209	ENST00000472044		A0A0U1RQJ8	604 aa		3.87	□□□□□ -1.79
PTCD3-209	ENST00000472044	HS6ST1	O60243	411 aa		3.87	□□□□□ -1.79
PTCD3-209	ENST00000472044	ZIC3	O60481	467 aa		3.87	□□□□□ -1.79
PTCD3-209	ENST00000472044	GAGE7	O76087	117 aa		3.87	□□□□□ -1.79
PTCD3-209	ENST00000472044	GLUD1	P00367	558 aa		3.87	□□□□□ -1.79
PTCD3-209	ENST00000472044	GAGE12F	P0CL80	117 aa		3.87	□□□□□ -1.79
PTCD3-209	ENST00000472044	GAGE12G	P0CL81	117 aa		3.87	□□□□□ -1.79
PTCD3-209	ENST00000472044	GAGE12I	P0CL82	117 aa		3.87	□□□□□ -1.79
PTCD3-209	ENST00000472044	ACTN1	P12814	892 aa		3.87	□□□□□ -1.79
PTCD3-209	ENST00000472044	ACADL	P28330	430 aa		3.87	□□□□□ -1.79
PTCD3-209	ENST00000472044	PIK3CA	P42336	1068 aa		3.87	□□□□□ -1.79
PTCD3-209	ENST00000472044	GLUD2	P49448	558 aa		3.87	□□□□□ -1.79
PTCD3-209	ENST00000472044	GALC	P54803	685 aa		3.87	□□□□□ -1.79
PTCD3-209	ENST00000472044	TAS2R40	P59535	323 aa		3.87	□□□□□ -1.79
PTCD3-209	ENST00000472044	MRPS34	P82930	218 aa	Known RBP	3.87	□□□□□ -1.79
PTCD3-209	ENST00000472044	GAGE1	Q13065	139 aa		3.87	□□□□□ -1.79
PTCD3-209	ENST00000472044	GAGE4	Q13068	117 aa		3.87	□□□□□ -1.79
PTCD3-209	ENST00000472044	SIGIRR	Q6IA17	410 aa		3.87	□□□□□ -1.79
PTCD3-209	ENST00000472044	B3GNT6	Q6ZMB0	384 aa		3.87	□□□□□ -1.79
PTCD3-209	ENST00000472044	TAOK1	Q7L7X3	1001 aa		3.87	□□□□□ -1.79
PTCD3-209	ENST00000472044	ZC3HC1	Q86WB0	502 aa	Known RBP	3.87	□□□□□ -1.79
PTCD3-209	ENST00000472044	NME8	Q8N427	588 aa		3.87	□□□□□ -1.79
PTCD3-209	ENST00000472044	SRBD1	Q8N5C6	995 aa	Known RBP	3.87	□□□□□ -1.79
PTCD3-209	ENST00000472044	C1orf131	Q8NDD1	294 aa	Known RBP	3.87	□□□□□ -1.79
PTCD3-209	ENST00000472044	TRPC4AP	Q8TEL6	797 aa		3.87	□□□□□ -1.79
PTCD3-209	ENST00000472044	SCARB1	Q8WTV0	552 aa		3.87	□□□□□ -1.79
PTCD3-209	ENST00000472044	SNRNP27	Q8WVK2	155 aa	Known RBP	3.87	□□□□□ -1.79
PTCD3-209	ENST00000472044	ZKSCAN4	Q969J2	545 aa	Predicted RBP	3.87	□□□□□ -1.79
PTCD3-209	ENST00000472044	CAMK1G	Q96NX5	476 aa		3.87	□□□□□ -1.79
PTCD3-209	ENST00000472044	PCGF1	Q9BSM1	259 aa		3.87	□□□□□ -1.79
PTCD3-209	ENST00000472044	NDST4	Q9H3R1	872 aa		3.87	□□□□□ -1.79
PTCD3-209	ENST00000472044	EBF3	Q9H4W6	596 aa		3.87	□□□□□ -1.79
PTCD3-209	ENST00000472044	PPP1R3E	Q9H7J1	279 aa		3.87	□□□□□ -1.79
PTCD3-209	ENST00000472044	CWC15	Q9P013	229 aa	Known RBP	3.87	□□□□□ -1.79
PTCD3-209	ENST00000472044	FBXL17	Q9UF56	701 aa		3.87	□□□□□ -1.79
PTCD3-209	ENST00000472044	ACSL5	Q9ULC5	683 aa		3.87	□□□□□ -1.79
PTCD3-209	ENST00000472044	PCDHA7	Q9UN72	937 aa		3.87	□□□□□ -1.79
PTCD3-209	ENST00000472044	CDC14A	Q9UNH5	594 aa		3.87	□□□□□ -1.79
PTCD3-209	ENST00000472044	ATXN2	Q99700	1313 aa	Known RBP	3.87	□□□□□ -1.79
PTCD3-209	ENST00000472044	MYMK	A6NI61	221 aa		3.86	□□□□□ -1.79
PTCD3-209	ENST00000472044	VCY	O14598	125 aa		3.86	□□□□□ -1.79
PTCD3-209	ENST00000472044	AHCYL1	O43865	530 aa		3.86	□□□□□ -1.79
PTCD3-209	ENST00000472044	CH25H	O95992	272 aa		3.86	□□□□□ -1.79
PTCD3-209	ENST00000472044	HIST1H2AB	P04908	130 aa		3.86	□□□□□ -1.79
PTCD3-209	ENST00000472044	RB1	P06400	928 aa		3.86	□□□□□ -1.79
PTCD3-209	ENST00000472044	SRPRA	P08240	638 aa	Known RBP	3.86	□□□□□ -1.79
PTCD3-209	ENST00000472044	CLTB	P09497	229 aa		3.86	□□□□□ -1.79
PTCD3-209	ENST00000472044	HIST1H2AD	P20671	130 aa		3.86	□□□□□ -1.79
PTCD3-209	ENST00000472044	UBA1	P22314	1058 aa	Known RBP	3.86	□□□□□ -1.79
PTCD3-209	ENST00000472044	STX2	P32856	288 aa		3.86	□□□□□ -1.79
PTCD3-209	ENST00000472044	ACSL1	P33121	698 aa		3.86	□□□□□ -1.79
PTCD3-209	ENST00000472044	EIF2S3	P41091	472 aa	Known RBP	3.86	□□□□□ -1.79
PTCD3-209	ENST00000472044	PRCP	P42785	496 aa		3.86	□□□□□ -1.79
PTCD3-209	ENST00000472044	FASLG	P48023	281 aa		3.86	□□□□□ -1.79
PTCD3-209	ENST00000472044	ACSM2A	Q08AH3	577 aa		3.86	□□□□□ -1.79
PTCD3-209	ENST00000472044	ZSCAN23	Q3MJ62	389 aa		3.86	□□□□□ -1.79
PTCD3-209	ENST00000472044	RARS2	Q5T160	578 aa	Known RBP	3.86	□□□□□ -1.79
PTCD3-209	ENST00000472044	FAM69B	Q5VUD6	431 aa		3.86	□□□□□ -1.79

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