RNA–Protein interactions for RNA: ENST00000466159.6

SYNE1-217, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best) BASIC

Gene SYNE1, Length 2,610 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-217ENST00000466159 TRMOQ9BU70 441 aa8.94□□□□□ -0.98
SYNE1-217ENST00000466159 PCDHAC1Q9H158 963 aa8.94□□□□□ -0.98
SYNE1-217ENST00000466159 PDP2Q9P2J9 529 aa8.94□□□□□ -0.98
SYNE1-217ENST00000466159 GIMAP2Q9UG22 337 aa8.94□□□□□ -0.98
SYNE1-217ENST00000466159 RIMS3Q9UJD0 308 aa8.94□□□□□ -0.98
SYNE1-217ENST00000466159 FAM50BQ9Y247 325 aa8.94□□□□□ -0.98
SYNE1-217ENST00000466159 H3BNC9 293 aa8.93□□□□□ -0.98
SYNE1-217ENST00000466159 CDK14O94921 469 aa8.93□□□□□ -0.98
SYNE1-217ENST00000466159 GALTP07902 379 aa8.93□□□□□ -0.98
SYNE1-217ENST00000466159 SNRPB2P08579 225 aaKnown RBP8.93□□□□□ -0.98
SYNE1-217ENST00000466159 ALDOCP09972 364 aaKnown RBP8.93□□□□□ -0.98
SYNE1-217ENST00000466159 FMO4P31512 558 aa8.93□□□□□ -0.98
SYNE1-217ENST00000466159 ATP5C1P36542 298 aaKnown RBP8.93□□□□□ -0.98
SYNE1-217ENST00000466159 CDKN1CP49918 316 aaPredicted RBP8.93□□□□□ -0.98
SYNE1-217ENST00000466159 SUOXP51687 545 aa8.93□□□□□ -0.98
SYNE1-217ENST00000466159 SGSHP51688 502 aa8.93□□□□□ -0.98
SYNE1-217ENST00000466159 NFKB2Q00653 900 aa8.93□□□□□ -0.98
SYNE1-217ENST00000466159 RALGDSQ12967 914 aa8.93□□□□□ -0.98
SYNE1-217ENST00000466159 STX5Q13190 355 aa8.93□□□□□ -0.98
SYNE1-217ENST00000466159 ALG1LQ6GMV1 187 aa8.93□□□□□ -0.98
SYNE1-217ENST00000466159 SPATA24Q86W54 205 aa8.93□□□□□ -0.98
SYNE1-217ENST00000466159 APLFQ8IW19 511 aaPredicted RBP8.93□□□□□ -0.98
SYNE1-217ENST00000466159 SLC43A3Q8NBI5 491 aa8.93□□□□□ -0.98
SYNE1-217ENST00000466159 MDGA1Q8NFP4 955 aa8.93□□□□□ -0.98
SYNE1-217ENST00000466159 OR4K2Q8NGD2 314 aa8.93□□□□□ -0.98
SYNE1-217ENST00000466159 PEX13Q92968 403 aa8.93□□□□□ -0.98
SYNE1-217ENST00000466159 C19orf60Q96EN9 201 aa8.93□□□□□ -0.98
SYNE1-217ENST00000466159 PKP2Q99959 881 aa8.93□□□□□ -0.98
SYNE1-217ENST00000466159 AARSD1Q9BTE6 412 aaKnown RBP8.93□□□□□ -0.98
SYNE1-217ENST00000466159 ZBED2Q9BTP6 218 aa8.93□□□□□ -0.98
SYNE1-217ENST00000466159 NACA2Q9H009 215 aa8.93□□□□□ -0.98
SYNE1-217ENST00000466159 MAGEH1Q9H213 219 aa8.93□□□□□ -0.98
SYNE1-217ENST00000466159 MID1IP1Q9NPA3 183 aa8.93□□□□□ -0.98
SYNE1-217ENST00000466159 UTP6Q9NYH9 597 aaKnown RBP8.93□□□□□ -0.98
SYNE1-217ENST00000466159 SRRDQ9UH36 339 aa8.93□□□□□ -0.98
SYNE1-217ENST00000466159 DNMT3LQ9UJW3 386 aa8.93□□□□□ -0.98
SYNE1-217ENST00000466159 IKZF3Q9UKT9 509 aa8.93□□□□□ -0.98
SYNE1-217ENST00000466159 DNAJC15Q9Y5T4 150 aa8.93□□□□□ -0.98
SYNE1-217ENST00000466159 A0A1B0GTL3 188 aa8.93□□□□□ -0.98
SYNE1-217ENST00000466159 TRIM38O00635 465 aa8.93□□□□□ -0.98
SYNE1-217ENST00000466159 AOC2O75106 756 aa8.93□□□□□ -0.98
SYNE1-217ENST00000466159 ALDH1A1P00352 501 aa8.93□□□□□ -0.98
SYNE1-217ENST00000466159 PENKP01210 267 aaPredicted RBP8.93□□□□□ -0.98
SYNE1-217ENST00000466159 KLKB1P03952 638 aa8.93□□□□□ -0.98
SYNE1-217ENST00000466159 COL6A1P12109 1028 aa8.93□□□□□ -0.98
SYNE1-217ENST00000466159 SELPP16109 830 aa8.93□□□□□ -0.98
SYNE1-217ENST00000466159 KPNA1P52294 538 aaPredicted RBP8.93□□□□□ -0.98
SYNE1-217ENST00000466159 NME5P56597 212 aa8.93□□□□□ -0.98
SYNE1-217ENST00000466159 BTG3Q14201 252 aaPredicted RBP8.93□□□□□ -0.98
SYNE1-217ENST00000466159 ADGRE1Q14246 886 aa8.93□□□□□ -0.98
SYNE1-217ENST00000466159 PTPRRQ15256 657 aa8.93□□□□□ -0.98
SYNE1-217ENST00000466159 TLR1Q15399 786 aa8.93□□□□□ -0.98
SYNE1-217ENST00000466159 C5orf22Q49AR2 442 aa8.93□□□□□ -0.98
SYNE1-217ENST00000466159 SETMARQ53H47 684 aaPredicted RBP8.93□□□□□ -0.98
SYNE1-217ENST00000466159 ACBD5Q5T8D3 534 aaPredicted RBP8.93□□□□□ -0.98
SYNE1-217ENST00000466159 LHX8Q68G74 356 aa8.93□□□□□ -0.98
SYNE1-217ENST00000466159 ZFP1Q6P2D0 407 aa8.93□□□□□ -0.98
SYNE1-217ENST00000466159 PAQR3Q6TCH7 311 aa8.93□□□□□ -0.98
SYNE1-217ENST00000466159 CLYBLQ8N0X4 340 aa8.93□□□□□ -0.98
SYNE1-217ENST00000466159 FBXO22Q8NEZ5 403 aa8.93□□□□□ -0.98
SYNE1-217ENST00000466159 ZNF512Q96ME7 567 aaPredicted RBP8.93□□□□□ -0.98
SYNE1-217ENST00000466159 PRICKLE1Q96MT3 831 aaPredicted RBP8.93□□□□□ -0.98
SYNE1-217ENST00000466159 ZNF599Q96NL3 588 aa8.93□□□□□ -0.98
SYNE1-217ENST00000466159 PSKH2Q96QS6 385 aa8.93□□□□□ -0.98
SYNE1-217ENST00000466159 KCNA7Q96RP8 456 aa8.93□□□□□ -0.98
SYNE1-217ENST00000466159 ATOH8Q96SQ7 321 aa8.93□□□□□ -0.98
SYNE1-217ENST00000466159 CYP2S1Q96SQ9 504 aa8.93□□□□□ -0.98
SYNE1-217ENST00000466159 SLC39A3Q9BRY0 314 aa8.93□□□□□ -0.98
SYNE1-217ENST00000466159 TTPALQ9BTX7 342 aa8.93□□□□□ -0.98
SYNE1-217ENST00000466159 CINPQ9BW66 212 aaPredicted RBP8.93□□□□□ -0.98
SYNE1-217ENST00000466159 UNC93B1Q9H1C4 597 aa8.93□□□□□ -0.98
SYNE1-217ENST00000466159 ELAC1Q9H777 363 aaKnown RBP8.93□□□□□ -0.98
SYNE1-217ENST00000466159 AKTIPQ9H8T0 292 aa8.93□□□□□ -0.98
SYNE1-217ENST00000466159 GKN1Q9NS71 199 aa8.93□□□□□ -0.98
SYNE1-217ENST00000466159 NLE1Q9NVX2 485 aaPredicted RBP8.93□□□□□ -0.98
SYNE1-217ENST00000466159 UBA2Q9UBT2 640 aaPredicted RBP8.93□□□□□ -0.98
SYNE1-217ENST00000466159 SEPT3Q9UH03 358 aa8.93□□□□□ -0.98
SYNE1-217ENST00000466159 BCAP29Q9UHQ4 241 aa8.93□□□□□ -0.98
SYNE1-217ENST00000466159 LRFN2Q9ULH4 789 aa8.93□□□□□ -0.98
SYNE1-217ENST00000466159 MED16Q9Y2X0 877 aa8.93□□□□□ -0.98
SYNE1-217ENST00000466159 ANKRD36A6QL64 1941 aa8.92□□□□□ -0.98
SYNE1-217ENST00000466159 A0A0U1RQS6 177 aa8.92□□□□□ -0.98
SYNE1-217ENST00000466159 PRORSD1PA6NEY8 169 aa8.92□□□□□ -0.98
SYNE1-217ENST00000466159 RHOBTB1O94844 696 aa8.92□□□□□ -0.98
SYNE1-217ENST00000466159 PRLP01236 227 aa8.92□□□□□ -0.98
SYNE1-217ENST00000466159 OGNP20774 298 aaKnown RBP8.92□□□□□ -0.98
SYNE1-217ENST00000466159 ZNF140P52738 457 aaPredicted RBP8.92□□□□□ -0.98
SYNE1-217ENST00000466159 OXCT1P55809 520 aa8.92□□□□□ -0.98
SYNE1-217ENST00000466159 LAMB3Q13751 1172 aa8.92□□□□□ -0.98
SYNE1-217ENST00000466159 TRIM25Q14258 630 aaKnown RBP8.92□□□□□ -0.98
SYNE1-217ENST00000466159 PDK3Q15120 406 aa8.92□□□□□ -0.98
SYNE1-217ENST00000466159 MAPRE2Q15555 327 aa8.92□□□□□ -0.98
SYNE1-217ENST00000466159 GEN1Q17RS7 908 aa8.92□□□□□ -0.98
SYNE1-217ENST00000466159 TYSND1Q2T9J0 566 aa8.92□□□□□ -0.98
SYNE1-217ENST00000466159 ANKS3Q6ZW76 656 aa8.92□□□□□ -0.98
SYNE1-217ENST00000466159 GLT6D1Q7Z4J2 308 aa8.92□□□□□ -0.98
SYNE1-217ENST00000466159 FUNDC1Q8IVP5 155 aa8.92□□□□□ -0.98
SYNE1-217ENST00000466159 TRPC4APQ8TEL6 797 aa8.92□□□□□ -0.98
SYNE1-217ENST00000466159 ATP6V1E2Q96A05 226 aa8.92□□□□□ -0.98
SYNE1-217ENST00000466159 ASB9Q96DX5 294 aa8.92□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms