RNA–Protein interactions for RNA: ENST00000464577.1

USP48-206, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 2

Gene USP48, Length 2,089 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-206ENST00000464577 RBM20Q5T481 1227 aaKnown RBP7.3□□□□□ -1.24
USP48-206ENST00000464577 GTF2IRD2BQ6EKJ0 949 aa7.3□□□□□ -1.24
USP48-206ENST00000464577 NEPROQ6NW34 567 aa7.3□□□□□ -1.24
USP48-206ENST00000464577 OTOP3Q7RTS5 596 aa7.3□□□□□ -1.24
USP48-206ENST00000464577 GTF2IRD2Q86UP8 949 aa7.3□□□□□ -1.24
USP48-206ENST00000464577 PHYKPLQ8IUZ5 450 aa7.3□□□□□ -1.24
USP48-206ENST00000464577 SNX19Q92543 992 aa7.3□□□□□ -1.24
USP48-206ENST00000464577 TMEM125Q96AQ2 219 aa7.3□□□□□ -1.24
USP48-206ENST00000464577 C18orf25Q96B23 403 aaPredicted RBP7.3□□□□□ -1.24
USP48-206ENST00000464577 LRCH3Q96II8 777 aa7.3□□□□□ -1.24
USP48-206ENST00000464577 GLT1D1Q96MS3 346 aa7.3□□□□□ -1.24
USP48-206ENST00000464577 CORO1BQ9BR76 489 aa7.3□□□□□ -1.24
USP48-206ENST00000464577 FICDQ9BVA6 458 aa7.3□□□□□ -1.24
USP48-206ENST00000464577 WDR12Q9GZL7 423 aaKnown RBP7.3□□□□□ -1.24
USP48-206ENST00000464577 SPATC1LQ9H0A9 340 aa7.3□□□□□ -1.24
USP48-206ENST00000464577 CXCL16Q9H2A7 254 aa7.3□□□□□ -1.24
USP48-206ENST00000464577 ARMC7Q9H6L4 198 aa7.3□□□□□ -1.24
USP48-206ENST00000464577 AKTIPQ9H8T0 292 aa7.3□□□□□ -1.24
USP48-206ENST00000464577 GLOD4Q9HC38 313 aa7.3□□□□□ -1.24
USP48-206ENST00000464577 FBRSL1Q9HCM7 1045 aaKnown RBP7.3□□□□□ -1.24
USP48-206ENST00000464577 SLC52A3Q9NQ40 469 aa7.3□□□□□ -1.24
USP48-206ENST00000464577 ENTPD7Q9NQZ7 604 aa7.3□□□□□ -1.24
USP48-206ENST00000464577 CHST12Q9NRB3 414 aa7.3□□□□□ -1.24
USP48-206ENST00000464577 SDR39U1Q9NRG7 319 aaPredicted RBP7.3□□□□□ -1.24
USP48-206ENST00000464577 EGFL7Q9UHF1 273 aa7.3□□□□□ -1.24
USP48-206ENST00000464577 TRIM17Q9Y577 477 aa7.3□□□□□ -1.24
USP48-206ENST00000464577 CLDN25C9JDP6 229 aa7.29□□□□□ -1.24
USP48-206ENST00000464577 UBXN8O00124 270 aa7.29□□□□□ -1.24
USP48-206ENST00000464577 TNPO2O14787 897 aaKnown RBP7.29□□□□□ -1.24
USP48-206ENST00000464577 INPP4BO15327 924 aa7.29□□□□□ -1.24
USP48-206ENST00000464577 VPS4BO75351 444 aa7.29□□□□□ -1.24
USP48-206ENST00000464577 SNAP29O95721 258 aa7.29□□□□□ -1.24
USP48-206ENST00000464577 HPRP00739 348 aa7.29□□□□□ -1.24
USP48-206ENST00000464577 F9P00740 461 aa7.29□□□□□ -1.24
USP48-206ENST00000464577 ALBP02768 609 aa7.29□□□□□ -1.24
USP48-206ENST00000464577 VTNP04004 478 aa7.29□□□□□ -1.24
USP48-206ENST00000464577 EIF2S1P05198 315 aaKnown RBP7.29□□□□□ -1.24
USP48-206ENST00000464577 CCNCP24863 283 aa7.29□□□□□ -1.24
USP48-206ENST00000464577 ETFBP38117 255 aa7.29□□□□□ -1.24
USP48-206ENST00000464577 LEPRP48357 1165 aaKnown RBP7.29□□□□□ -1.24
USP48-206ENST00000464577 RXRGP48443 463 aa7.29□□□□□ -1.24
USP48-206ENST00000464577 GABARAPL2P60520 117 aa7.29□□□□□ -1.24
USP48-206ENST00000464577 HERVK_113P63132 956 aa7.29□□□□□ -1.24
USP48-206ENST00000464577 GNA12Q03113 381 aa7.29□□□□□ -1.24
USP48-206ENST00000464577 GRIK2Q13002 908 aa7.29□□□□□ -1.24
USP48-206ENST00000464577 SEPT6Q14141 434 aa7.29□□□□□ -1.24
USP48-206ENST00000464577 SKIV2LQ15477 1246 aaKnown RBP7.29□□□□□ -1.24
USP48-206ENST00000464577 CRY1Q16526 586 aa7.29□□□□□ -1.24
USP48-206ENST00000464577 VPS26BQ4G0F5 336 aa7.29□□□□□ -1.24
USP48-206ENST00000464577 UNC50Q53HI1 259 aa7.29□□□□□ -1.24
USP48-206ENST00000464577 CLEC6AQ6EIG7 209 aa7.29□□□□□ -1.24
USP48-206ENST00000464577 XAF1Q6GPH4 301 aa7.29□□□□□ -1.24
USP48-206ENST00000464577 ALKAL1Q6UXT8 129 aa7.29□□□□□ -1.24
USP48-206ENST00000464577 HFE2Q6ZVN8 426 aa7.29□□□□□ -1.24
USP48-206ENST00000464577 TFAP2DQ7Z6R9 452 aa7.29□□□□□ -1.24
USP48-206ENST00000464577 DCP1BQ8IZD4 617 aaKnown RBP7.29□□□□□ -1.24
USP48-206ENST00000464577 PARP8Q8N3A8 854 aa7.29□□□□□ -1.24
USP48-206ENST00000464577 B3GALNT2Q8NCR0 500 aa7.29□□□□□ -1.24
USP48-206ENST00000464577 APPL2Q8NEU8 664 aa7.29□□□□□ -1.24
USP48-206ENST00000464577 BPIFB1Q8TDL5 484 aa7.29□□□□□ -1.24
USP48-206ENST00000464577 USP33Q8TEY7 942 aa7.29□□□□□ -1.24
USP48-206ENST00000464577 TAMM41Q96BW9 452 aa7.29□□□□□ -1.24
USP48-206ENST00000464577 KLRG1Q96E93 195 aa7.29□□□□□ -1.24
USP48-206ENST00000464577 C3orf30Q96M34 536 aa7.29□□□□□ -1.24
USP48-206ENST00000464577 RDH12Q96NR8 316 aa7.29□□□□□ -1.24
USP48-206ENST00000464577 ALPK1Q96QP1 1244 aa7.29□□□□□ -1.24
USP48-206ENST00000464577 TSPAN18Q96SJ8 248 aa7.29□□□□□ -1.24
USP48-206ENST00000464577 PPP1R16BQ96T49 567 aa7.29□□□□□ -1.24
USP48-206ENST00000464577 IL12RB2Q99665 862 aa7.29□□□□□ -1.24
USP48-206ENST00000464577 SLC30A3Q99726 388 aa7.29□□□□□ -1.24
USP48-206ENST00000464577 BCL7BQ9BQE9 202 aa7.29□□□□□ -1.24
USP48-206ENST00000464577 MTG1Q9BT17 334 aaPredicted RBP7.29□□□□□ -1.24
USP48-206ENST00000464577 BDH2Q9BUT1 245 aa7.29□□□□□ -1.24
USP48-206ENST00000464577 ERVK-6Q9BXR3 956 aa7.29□□□□□ -1.24
USP48-206ENST00000464577 SNTG2Q9NY99 539 aa7.29□□□□□ -1.24
USP48-206ENST00000464577 SLC2A6Q9UGQ3 507 aa7.29□□□□□ -1.24
USP48-206ENST00000464577 GPC6Q9Y625 555 aaPredicted RBP7.29□□□□□ -1.24
USP48-206ENST00000464577 CPQQ9Y646 472 aa7.29□□□□□ -1.24
USP48-206ENST00000464577 C1orf232A0A0U1RR37 186 aa7.29□□□□□ -1.24
USP48-206ENST00000464577 KRBA1A5PL33 1030 aa7.29□□□□□ -1.24
USP48-206ENST00000464577 C16orf96A6NNT2 1141 aa7.29□□□□□ -1.24
USP48-206ENST00000464577 H0Y858 1186 aa7.29□□□□□ -1.24
USP48-206ENST00000464577 AQP9O43315 295 aa7.29□□□□□ -1.24
USP48-206ENST00000464577 PRSS23O95084 383 aa7.29□□□□□ -1.24
USP48-206ENST00000464577 UGT2B4P06133 528 aa7.29□□□□□ -1.24
USP48-206ENST00000464577 LBPP18428 481 aa7.29□□□□□ -1.24
USP48-206ENST00000464577 HTR1EP28566 365 aa7.29□□□□□ -1.24
USP48-206ENST00000464577 EIF2B2P49770 351 aaKnown RBP7.29□□□□□ -1.24
USP48-206ENST00000464577 ALDH3A2P51648 485 aa7.29□□□□□ -1.24
USP48-206ENST00000464577 PLK1P53350 603 aa7.29□□□□□ -1.24
USP48-206ENST00000464577 DAOAP59103 153 aa7.29□□□□□ -1.24
USP48-206ENST00000464577 ITGADQ13349 1161 aa7.29□□□□□ -1.24
USP48-206ENST00000464577 CAPRIN1Q14444 709 aaKnown RBP7.29□□□□□ -1.24
USP48-206ENST00000464577 FSCN1Q16658 493 aaKnown RBP7.29□□□□□ -1.24
USP48-206ENST00000464577 CYP2A13Q16696 494 aa7.29□□□□□ -1.24
USP48-206ENST00000464577 SV2CQ496J9 727 aa7.29□□□□□ -1.24
USP48-206ENST00000464577 HECTD2Q5U5R9 776 aa7.29□□□□□ -1.24
USP48-206ENST00000464577 KANK2Q63ZY3 851 aa7.29□□□□□ -1.24
USP48-206ENST00000464577 PM20D1Q6GTS8 502 aa7.29□□□□□ -1.24
USP48-206ENST00000464577 ZNF280DQ6N043 979 aa7.29□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms