RNA–Protein interactions for RNA: ENST00000437607.1

PTPRF-208, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 788 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-208ENST00000437607 NT5MQ9NPB1 228 aa12.22□□□□□ -0.45
PTPRF-208ENST00000437607 UCKL1Q9NWZ5 548 aa12.22□□□□□ -0.45
PTPRF-208ENST00000437607 GOLGA6AQ9NYA3 693 aa12.22□□□□□ -0.45
PTPRF-208ENST00000437607 SEPT3Q9UH03 358 aa12.22□□□□□ -0.45
PTPRF-208ENST00000437607 DMGDHQ9UI17 866 aaKnown RBP12.22□□□□□ -0.45
PTPRF-208ENST00000437607 CLCA2Q9UQC9 943 aa12.22□□□□□ -0.45
PTPRF-208ENST00000437607 NEU2Q9Y3R4 380 aa12.22□□□□□ -0.45
PTPRF-208ENST00000437607 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP12.21□□□□□ -0.45
PTPRF-208ENST00000437607 DNALI1O14645 258 aaPredicted RBP12.21□□□□□ -0.45
PTPRF-208ENST00000437607 ALOX15BO15296 676 aa12.21□□□□□ -0.45
PTPRF-208ENST00000437607 TMCC1O94876 653 aa12.21□□□□□ -0.45
PTPRF-208ENST00000437607 SEC31AO94979 1220 aaKnown RBP12.21□□□□□ -0.45
PTPRF-208ENST00000437607 MT-CO1P00395 513 aa12.21□□□□□ -0.45
PTPRF-208ENST00000437607 HLA-DQB2P05538 268 aa12.21□□□□□ -0.45
PTPRF-208ENST00000437607 SRCP12931 536 aa12.21□□□□□ -0.45
PTPRF-208ENST00000437607 DGKAP23743 735 aa12.21□□□□□ -0.45
PTPRF-208ENST00000437607 PSMB4P28070 264 aa12.21□□□□□ -0.45
PTPRF-208ENST00000437607 TNFRSF8P28908 595 aa12.21□□□□□ -0.45
PTPRF-208ENST00000437607 HSPA9P38646 679 aaKnown RBP12.21□□□□□ -0.45
PTPRF-208ENST00000437607 RPL21P46778 160 aaKnown RBP12.21□□□□□ -0.45
PTPRF-208ENST00000437607 LMAN1P49257 510 aa12.21□□□□□ -0.45
PTPRF-208ENST00000437607 TERF1P54274 439 aa12.21□□□□□ -0.45
PTPRF-208ENST00000437607 TLE3Q04726 772 aa12.21□□□□□ -0.45
PTPRF-208ENST00000437607 OVGP1Q12889 678 aa12.21□□□□□ -0.45
PTPRF-208ENST00000437607 PRPSAP1Q14558 356 aa12.21□□□□□ -0.45
PTPRF-208ENST00000437607 KCTD19Q17RG1 926 aaPredicted RBP12.21□□□□□ -0.45
PTPRF-208ENST00000437607 SETMARQ53H47 684 aaPredicted RBP12.21□□□□□ -0.45
PTPRF-208ENST00000437607 TEX44Q53QW1 395 aa12.21□□□□□ -0.45
PTPRF-208ENST00000437607 DUPD1Q68J44 220 aa12.21□□□□□ -0.45
PTPRF-208ENST00000437607 KDM7AQ6ZMT4 941 aa12.21□□□□□ -0.45
PTPRF-208ENST00000437607 LEKR1Q6ZMV7 388 aa12.21□□□□□ -0.45
PTPRF-208ENST00000437607 PID1Q7Z2X4 250 aa12.21□□□□□ -0.45
PTPRF-208ENST00000437607 PCGF5Q86SE9 256 aa12.21□□□□□ -0.45
PTPRF-208ENST00000437607 DSG4Q86SJ6 1040 aa12.21□□□□□ -0.45
PTPRF-208ENST00000437607 TAB3Q8N5C8 712 aaPredicted RBP12.21□□□□□ -0.45
PTPRF-208ENST00000437607 CASKIN2Q8WXE0 1202 aa12.21□□□□□ -0.45
PTPRF-208ENST00000437607 FGF11Q92914 225 aa12.21□□□□□ -0.45
PTPRF-208ENST00000437607 KLHDC7BQ96G42 594 aa12.21□□□□□ -0.45
PTPRF-208ENST00000437607 AGAP3Q96P47 875 aa12.21□□□□□ -0.45
PTPRF-208ENST00000437607 IL12RB2Q99665 862 aa12.21□□□□□ -0.45
PTPRF-208ENST00000437607 MYOCQ99972 504 aa12.21□□□□□ -0.45
PTPRF-208ENST00000437607 PREBQ9HCU5 417 aa12.21□□□□□ -0.45
PTPRF-208ENST00000437607 FZD3Q9NPG1 666 aa12.21□□□□□ -0.45
PTPRF-208ENST00000437607 RAB6BQ9NRW1 208 aa12.21□□□□□ -0.45
PTPRF-208ENST00000437607 RBM22Q9NW64 420 aaKnown RBP eCLIP12.21□□□□□ -0.45
PTPRF-208ENST00000437607 WHRNQ9P202 907 aa12.21□□□□□ -0.45
PTPRF-208ENST00000437607 SHOC2Q9UQ13 582 aa12.21□□□□□ -0.45
PTPRF-208ENST00000437607 SNX24Q9Y343 169 aa12.21□□□□□ -0.45
PTPRF-208ENST00000437607 PCDHB1Q9Y5F3 818 aa12.21□□□□□ -0.45
PTPRF-208ENST00000437607 MYO18BQ8IUG5 2567 aa12.21□□□□□ -0.46
PTPRF-208ENST00000437607 BOD1L1Q8NFC6 3051 aa12.2□□□□□ -0.46
PTPRF-208ENST00000437607 LY6G6EA0A0G2JKS1 128 aa12.2□□□□□ -0.46
PTPRF-208ENST00000437607 CXorf51AA0A1B0GTR3 108 aa12.2□□□□□ -0.46
PTPRF-208ENST00000437607 A0A1W2PQU0 124 aa12.2□□□□□ -0.46
PTPRF-208ENST00000437607 C1QTNF3-AMACRE9PGA6 284 aa12.2□□□□□ -0.46
PTPRF-208ENST00000437607 F5H423 210 aaPredicted RBP12.2□□□□□ -0.46
PTPRF-208ENST00000437607 K7ERQ8 282 aa12.2□□□□□ -0.46
PTPRF-208ENST00000437607 TK2O00142 265 aa12.2□□□□□ -0.46
PTPRF-208ENST00000437607 SMAPO00193 183 aa12.2□□□□□ -0.46
PTPRF-208ENST00000437607 SLC31A1O15431 190 aa12.2□□□□□ -0.46
PTPRF-208ENST00000437607 RRP8O43159 456 aaKnown RBP12.2□□□□□ -0.46
PTPRF-208ENST00000437607 BNIP3LO60238 219 aa12.2□□□□□ -0.46
PTPRF-208ENST00000437607 MAGEC1O60732 1142 aa12.2□□□□□ -0.46
PTPRF-208ENST00000437607 THEGLP0DJG4 465 aa12.2□□□□□ -0.46
PTPRF-208ENST00000437607 NFKB1P19838 968 aa12.2□□□□□ -0.46
PTPRF-208ENST00000437607 SERPINH1P50454 418 aaKnown RBP12.2□□□□□ -0.46
PTPRF-208ENST00000437607 RHOAP61586 193 aa12.2□□□□□ -0.46
PTPRF-208ENST00000437607 ARF5P84085 180 aa12.2□□□□□ -0.46
PTPRF-208ENST00000437607 CAV1Q03135 178 aa12.2□□□□□ -0.46
PTPRF-208ENST00000437607 ITKQ08881 620 aa12.2□□□□□ -0.46
PTPRF-208ENST00000437607 C19orf57Q0VDD7 668 aa12.2□□□□□ -0.46
PTPRF-208ENST00000437607 ZNF284Q2VY69 593 aa12.2□□□□□ -0.46
PTPRF-208ENST00000437607 TBC1D25Q3MII6 688 aa12.2□□□□□ -0.46
PTPRF-208ENST00000437607 MAP9Q49MG5 647 aa12.2□□□□□ -0.46
PTPRF-208ENST00000437607 FAXCQ5TGI0 409 aa12.2□□□□□ -0.46
PTPRF-208ENST00000437607 CDCP2Q5VXM1 449 aa12.2□□□□□ -0.46
PTPRF-208ENST00000437607 WDR93Q6P2C0 686 aa12.2□□□□□ -0.46
PTPRF-208ENST00000437607 LINGO4Q6UY18 593 aa12.2□□□□□ -0.46
PTPRF-208ENST00000437607 PPIL6Q8IXY8 311 aa12.2□□□□□ -0.46
PTPRF-208ENST00000437607 SLC22A18ASQ8N1D0 253 aa12.2□□□□□ -0.46
PTPRF-208ENST00000437607 CHST14Q8NCH0 376 aa12.2□□□□□ -0.46
PTPRF-208ENST00000437607 OR13H1Q8NG92 308 aa12.2□□□□□ -0.46
PTPRF-208ENST00000437607 OR2A12Q8NGT7 310 aa12.2□□□□□ -0.46
PTPRF-208ENST00000437607 OR4C6Q8NH72 309 aa12.2□□□□□ -0.46
PTPRF-208ENST00000437607 IFT81Q8WYA0 676 aa12.2□□□□□ -0.46
PTPRF-208ENST00000437607 TEKT5Q96M29 485 aa12.2□□□□□ -0.46
PTPRF-208ENST00000437607 POLR1EQ9GZS1 481 aaKnown RBP12.2□□□□□ -0.46
PTPRF-208ENST00000437607 ARGLU1Q9NWB6 273 aaPredicted RBP12.2□□□□□ -0.46
PTPRF-208ENST00000437607 MTRF1LQ9UGC7 380 aaKnown RBP12.2□□□□□ -0.46
PTPRF-208ENST00000437607 ZFR2Q9UPR6 939 aaKnown RBP12.2□□□□□ -0.46
PTPRF-208ENST00000437607 HS3ST2Q9Y278 367 aa12.2□□□□□ -0.46
PTPRF-208ENST00000437607 U3KQA8 63 aa12.2□□□□□ -0.46
PTPRF-208ENST00000437607 SMAD6O43541 496 aaKnown RBP12.19□□□□□ -0.46
PTPRF-208ENST00000437607 ERLIN1O75477 346 aa12.19□□□□□ -0.46
PTPRF-208ENST00000437607 ZMPSTE24O75844 475 aa12.19□□□□□ -0.46
PTPRF-208ENST00000437607 PIAS2O75928 621 aa12.19□□□□□ -0.46
PTPRF-208ENST00000437607 PEX11BO96011 259 aa12.19□□□□□ -0.46
PTPRF-208ENST00000437607 MT-CO3P00414 261 aa12.19□□□□□ -0.46
PTPRF-208ENST00000437607 MYF5P13349 255 aa12.19□□□□□ -0.46
PTPRF-208ENST00000437607 TNNT3P45378 269 aaPredicted RBP12.19□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 105.3 ms