RNA–Protein interactions for RNA: ENST00000405805.5

HMGB1-206, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 4,199 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-206ENST00000405805 THEM5Q8N1Q8 247 aa11.95□□□□□ -0.5
HMGB1-206ENST00000405805 FNDC5Q8NAU1 212 aa11.95□□□□□ -0.5
HMGB1-206ENST00000405805 ADCY4Q8NFM4 1077 aa11.95□□□□□ -0.5
HMGB1-206ENST00000405805 DUSP16Q9BY84 665 aa11.95□□□□□ -0.5
HMGB1-206ENST00000405805 CATSPERBQ9H7T0 1116 aa11.95□□□□□ -0.5
HMGB1-206ENST00000405805 OXSMQ9NWU1 459 aa11.95□□□□□ -0.5
HMGB1-206ENST00000405805 PCDHGB4Q9UN71 923 aa11.95□□□□□ -0.5
HMGB1-206ENST00000405805 PCDHGB5Q9Y5G0 923 aa11.95□□□□□ -0.5
HMGB1-206ENST00000405805 COL2A1P02458 1487 aaPredicted RBP11.95□□□□□ -0.5
HMGB1-206ENST00000405805 MOXD2PA6NHM9 499 aa11.95□□□□□ -0.5
HMGB1-206ENST00000405805 K7EPI3 171 aa11.95□□□□□ -0.5
HMGB1-206ENST00000405805 THP07101 528 aa11.95□□□□□ -0.5
HMGB1-206ENST00000405805 PCSK1P29120 753 aa11.95□□□□□ -0.5
HMGB1-206ENST00000405805 GGT5P36269 586 aa11.95□□□□□ -0.5
HMGB1-206ENST00000405805 PNPLA4P41247 253 aa11.95□□□□□ -0.5
HMGB1-206ENST00000405805 PTPN9P43378 593 aa11.95□□□□□ -0.5
HMGB1-206ENST00000405805 TUBA4AP68366 448 aa11.95□□□□□ -0.5
HMGB1-206ENST00000405805 UNC93AQ86WB7 457 aa11.95□□□□□ -0.5
HMGB1-206ENST00000405805 SCAMP5Q8TAC9 235 aa11.95□□□□□ -0.5
HMGB1-206ENST00000405805 CLIP3Q96DZ5 547 aa11.95□□□□□ -0.5
HMGB1-206ENST00000405805 RERGLQ9H628 205 aa11.95□□□□□ -0.5
HMGB1-206ENST00000405805 ASB3Q9Y575 518 aa11.95□□□□□ -0.5
HMGB1-206ENST00000405805 SF3B1O75533 1304 aaKnown RBP eCLIP11.95□□□□□ -0.54e-8■■□□□ 13.3
HMGB1-206ENST00000405805 A0A0G2JLL6 359 aaPredicted RBP11.94□□□□□ -0.5
HMGB1-206ENST00000405805 A0A0J9YYE9 177 aa11.94□□□□□ -0.5
HMGB1-206ENST00000405805 DHRS12A0PJE2 317 aa11.94□□□□□ -0.5
HMGB1-206ENST00000405805 AURKAO14965 403 aa11.94□□□□□ -0.5
HMGB1-206ENST00000405805 H2AFYO75367 372 aaKnown RBP11.94□□□□□ -0.5
HMGB1-206ENST00000405805 ATG7O95352 703 aa11.94□□□□□ -0.5
HMGB1-206ENST00000405805 RBP1P09455 135 aa11.94□□□□□ -0.5
HMGB1-206ENST00000405805 LILRA4P59901 499 aa11.94□□□□□ -0.5
HMGB1-206ENST00000405805 ECT2LQ008S8 904 aa11.94□□□□□ -0.5
HMGB1-206ENST00000405805 POU4F1Q01851 419 aa11.94□□□□□ -0.5
HMGB1-206ENST00000405805 MSLNQ13421 630 aaPredicted RBP11.94□□□□□ -0.5
HMGB1-206ENST00000405805 C10orf120Q5SQS8 335 aa11.94□□□□□ -0.5
HMGB1-206ENST00000405805 C16orf62Q7Z3J2 963 aa11.94□□□□□ -0.5
HMGB1-206ENST00000405805 MAVSQ7Z434 540 aa11.94□□□□□ -0.5
HMGB1-206ENST00000405805 PRRT2Q7Z6L0 340 aaPredicted RBP11.94□□□□□ -0.5
HMGB1-206ENST00000405805 LATS2Q9NRM7 1088 aa11.94□□□□□ -0.5
HMGB1-206ENST00000405805 TRHDEQ9UKU6 1024 aa11.94□□□□□ -0.5
HMGB1-206ENST00000405805 TMEM114B3SHH9 223 aa11.94□□□□□ -0.5
HMGB1-206ENST00000405805 GRM5P41594 1212 aa11.94□□□□□ -0.5
HMGB1-206ENST00000405805 SLC1A2P43004 574 aa11.94□□□□□ -0.5
HMGB1-206ENST00000405805 KRT6CP48668 564 aa11.94□□□□□ -0.5
HMGB1-206ENST00000405805 CLK3P49761 638 aaKnown RBP11.94□□□□□ -0.5
HMGB1-206ENST00000405805 ARMC4Q5T2S8 1044 aa11.94□□□□□ -0.5
HMGB1-206ENST00000405805 PLEKHH3Q7Z736 793 aa11.94□□□□□ -0.5
HMGB1-206ENST00000405805 PIM3Q86V86 326 aa11.94□□□□□ -0.5
HMGB1-206ENST00000405805 BBS5Q8N3I7 341 aa11.94□□□□□ -0.5
HMGB1-206ENST00000405805 GRIN3AQ8TCU5 1115 aa11.94□□□□□ -0.5
HMGB1-206ENST00000405805 PHF21AQ96BD5 680 aa11.94□□□□□ -0.5
HMGB1-206ENST00000405805 FCRL2Q96LA5 508 aaPredicted RBP11.94□□□□□ -0.5
HMGB1-206ENST00000405805 PPM1MQ96MI6 270 aa11.94□□□□□ -0.5
HMGB1-206ENST00000405805 BTBD9Q96Q07 612 aa11.94□□□□□ -0.5
HMGB1-206ENST00000405805 SEPT5Q99719 369 aaPredicted RBP11.94□□□□□ -0.5
HMGB1-206ENST00000405805 C1orf21Q9H246 121 aa11.94□□□□□ -0.5
HMGB1-206ENST00000405805 KANSL1LA0AUZ9 987 aa11.94□□□□□ -0.5
HMGB1-206ENST00000405805 C16orf96A6NNT2 1141 aa11.94□□□□□ -0.5
HMGB1-206ENST00000405805 EIF3FO00303 357 aaPredicted RBP11.94□□□□□ -0.5
HMGB1-206ENST00000405805 F9P00740 461 aa11.94□□□□□ -0.5
HMGB1-206ENST00000405805 ATP5BP06576 529 aaKnown RBP11.94□□□□□ -0.5
HMGB1-206ENST00000405805 CPOXP36551 454 aa11.94□□□□□ -0.5
HMGB1-206ENST00000405805 FRG1Q14331 258 aaKnown RBP11.94□□□□□ -0.5
HMGB1-206ENST00000405805 ZYG11AQ6WRX3 759 aa11.94□□□□□ -0.5
HMGB1-206ENST00000405805 CDYL2Q8N8U2 506 aa11.94□□□□□ -0.5
HMGB1-206ENST00000405805 MTERF3Q96E29 417 aa11.94□□□□□ -0.5
HMGB1-206ENST00000405805 TMEM98Q9Y2Y6 226 aa11.94□□□□□ -0.5
HMGB1-206ENST00000405805 RAD54BQ9Y620 910 aa11.94□□□□□ -0.5
HMGB1-206ENST00000405805 NCAM2O15394 837 aa11.93□□□□□ -0.5
HMGB1-206ENST00000405805 B3GALNT1O75752 331 aa11.93□□□□□ -0.5
HMGB1-206ENST00000405805 LTA4HP09960 611 aaKnown RBP11.93□□□□□ -0.5
HMGB1-206ENST00000405805 HLA-DPA1P20036 260 aa11.93□□□□□ -0.5
HMGB1-206ENST00000405805 ABATP80404 500 aa11.93□□□□□ -0.5
HMGB1-206ENST00000405805 CDKL1Q00532 357 aa11.93□□□□□ -0.5
HMGB1-206ENST00000405805 GALNT3Q14435 633 aa11.93□□□□□ -0.5
HMGB1-206ENST00000405805 NR6A1Q15406 480 aa11.93□□□□□ -0.5
HMGB1-206ENST00000405805 REP15Q6BDI9 236 aa11.93□□□□□ -0.5
HMGB1-206ENST00000405805 PKN3Q6P5Z2 889 aa11.93□□□□□ -0.5
HMGB1-206ENST00000405805 ZNF534Q76KX8 674 aa11.93□□□□□ -0.5
HMGB1-206ENST00000405805 ASB12Q8WXK4 309 aa11.93□□□□□ -0.5
HMGB1-206ENST00000405805 DLG3Q92796 817 aa11.93□□□□□ -0.5
HMGB1-206ENST00000405805 PLEKHA8Q96JA3 519 aa11.93□□□□□ -0.5
HMGB1-206ENST00000405805 FERD3LQ96RJ6 166 aa11.93□□□□□ -0.5
HMGB1-206ENST00000405805 BPIFA1Q9NP55 256 aa11.93□□□□□ -0.5
HMGB1-206ENST00000405805 ADAM28Q9UKQ2 775 aa11.93□□□□□ -0.5
HMGB1-206ENST00000405805 ADAMTS5Q9UNA0 930 aa11.93□□□□□ -0.5
HMGB1-206ENST00000405805 CNTRLQ7Z7A1 2325 aa11.93□□□□□ -0.5
HMGB1-206ENST00000405805 A6NL46 340 aa11.93□□□□□ -0.5
HMGB1-206ENST00000405805 BTN3A1O00481 513 aa11.93□□□□□ -0.5
HMGB1-206ENST00000405805 SYNCRIPO60506 623 aaKnown RBP11.93□□□□□ -0.5
HMGB1-206ENST00000405805 PFKMP08237 780 aa11.93□□□□□ -0.5
HMGB1-206ENST00000405805 MSL3P1P0C860 447 aa11.93□□□□□ -0.5
HMGB1-206ENST00000405805 IRF1P10914 325 aa11.93□□□□□ -0.5
HMGB1-206ENST00000405805 CCNA2P20248 432 aa11.93□□□□□ -0.5
HMGB1-206ENST00000405805 PSMB9P28065 219 aa11.93□□□□□ -0.5
HMGB1-206ENST00000405805 ZNF157P51786 506 aaPredicted RBP11.93□□□□□ -0.5
HMGB1-206ENST00000405805 DNASE1L3Q13609 305 aa11.93□□□□□ -0.5
HMGB1-206ENST00000405805 POLD3Q15054 466 aaPredicted RBP11.93□□□□□ -0.5
HMGB1-206ENST00000405805 ARNTL2Q8WYA1 636 aa11.93□□□□□ -0.5
HMGB1-206ENST00000405805 PCED1BQ96HM7 432 aa11.93□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 36.8 ms