RNA–Protein interactions for RNA: ENST00000393824.7

CUX1-204, Transcript of cut like homeobox 1, humanhuman

TSL 2 BASIC

Gene CUX1, Length 2,331 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-204ENST00000393824 ZNF347Q96SE7 839 aa11.15□□□□□ -0.62
CUX1-204ENST00000393824 NANOGQ9H9S0 305 aa11.15□□□□□ -0.62
CUX1-204ENST00000393824 SNX15Q9NRS6 342 aa11.15□□□□□ -0.62
CUX1-204ENST00000393824 OXSMQ9NWU1 459 aa11.15□□□□□ -0.62
CUX1-204ENST00000393824 CD300AQ9UGN4 299 aa11.15□□□□□ -0.62
CUX1-204ENST00000393824 CNOT6Q9ULM6 557 aaKnown RBP11.15□□□□□ -0.62
CUX1-204ENST00000393824 TCAF1Q9Y4C2 921 aa11.15□□□□□ -0.62
CUX1-204ENST00000393824 HACD1B0YJ81 288 aa11.15□□□□□ -0.62
CUX1-204ENST00000393824 E7ENX8 843 aa11.15□□□□□ -0.62
CUX1-204ENST00000393824 TMEM189-UBE2V1I3L0A0 370 aa11.15□□□□□ -0.62
CUX1-204ENST00000393824 ADAM12O43184 909 aa11.15□□□□□ -0.62
CUX1-204ENST00000393824 NOL3O60936 208 aaKnown RBP11.15□□□□□ -0.62
CUX1-204ENST00000393824 CPNE6O95741 557 aa11.15□□□□□ -0.62
CUX1-204ENST00000393824 EFEMP2O95967 443 aa11.15□□□□□ -0.62
CUX1-204ENST00000393824 BCL10O95999 233 aa11.15□□□□□ -0.62
CUX1-204ENST00000393824 ODC1P11926 461 aa11.15□□□□□ -0.62
CUX1-204ENST00000393824 PGAM1P18669 254 aa11.15□□□□□ -0.62
CUX1-204ENST00000393824 MPSTP25325 297 aa11.15□□□□□ -0.62
CUX1-204ENST00000393824 KPNA1P52294 538 aaPredicted RBP11.15□□□□□ -0.62
CUX1-204ENST00000393824 GNA12Q03113 381 aa11.15□□□□□ -0.62
CUX1-204ENST00000393824 FRG1Q14331 258 aaKnown RBP11.15□□□□□ -0.62
CUX1-204ENST00000393824 GRTP1Q5TC63 336 aa11.15□□□□□ -0.62
CUX1-204ENST00000393824 TMEM198Q66K66 360 aa11.15□□□□□ -0.62
CUX1-204ENST00000393824 FUT10Q6P4F1 479 aa11.15□□□□□ -0.62
CUX1-204ENST00000393824 PRSS55Q6UWB4 352 aaPredicted RBP11.15□□□□□ -0.62
CUX1-204ENST00000393824 ERMP1Q7Z2K6 904 aa11.15□□□□□ -0.62
CUX1-204ENST00000393824 CLEC14AQ86T13 490 aa11.15□□□□□ -0.62
CUX1-204ENST00000393824 ZC3H7AQ8IWR0 971 aaKnown RBP11.15□□□□□ -0.62
CUX1-204ENST00000393824 CADM3Q8N126 398 aa11.15□□□□□ -0.62
CUX1-204ENST00000393824 TTC9BQ8N6N2 239 aa11.15□□□□□ -0.62
CUX1-204ENST00000393824 OR13F1Q8NGS4 319 aa11.15□□□□□ -0.62
CUX1-204ENST00000393824 PNPT1Q8TCS8 783 aaKnown RBP11.15□□□□□ -0.62
CUX1-204ENST00000393824 CLEC4CQ8WTT0 213 aa11.15□□□□□ -0.62
CUX1-204ENST00000393824 NDRG1Q92597 394 aaKnown RBP11.15□□□□□ -0.62
CUX1-204ENST00000393824 QKIQ96PU8 341 aaKnown RBP eCLIP11.15□□□□□ -0.626e-15■■■■□ 22.1
CUX1-204ENST00000393824 ALPK1Q96QP1 1244 aa11.15□□□□□ -0.62
CUX1-204ENST00000393824 MRPL46Q9H2W6 279 aaKnown RBP11.15□□□□□ -0.62
CUX1-204ENST00000393824 GPN2Q9H9Y4 310 aaPredicted RBP11.15□□□□□ -0.62
CUX1-204ENST00000393824 QPCTLQ9NXS2 382 aa11.15□□□□□ -0.62
CUX1-204ENST00000393824 CDYLQ9Y232 598 aa11.15□□□□□ -0.62
CUX1-204ENST00000393824 COPG1Q9Y678 874 aaKnown RBP11.15□□□□□ -0.62
CUX1-204ENST00000393824 C1orf232A0A0U1RR37 186 aa11.14□□□□□ -0.63
CUX1-204ENST00000393824 HEATR9A2RTY3 570 aa11.14□□□□□ -0.63
CUX1-204ENST00000393824 RSL1D1O76021 490 aaKnown RBP11.14□□□□□ -0.63
CUX1-204ENST00000393824 CHRNGP07510 517 aa11.14□□□□□ -0.63
CUX1-204ENST00000393824 ALOX5P09917 674 aa11.14□□□□□ -0.63
CUX1-204ENST00000393824 RPL17P18621 184 aaKnown RBP11.14□□□□□ -0.63
CUX1-204ENST00000393824 MAP4P27816 1152 aaKnown RBP11.14□□□□□ -0.63
CUX1-204ENST00000393824 PRKAA2P54646 552 aa11.14□□□□□ -0.63
CUX1-204ENST00000393824 YWHAHQ04917 246 aaPredicted RBP11.14□□□□□ -0.63
CUX1-204ENST00000393824 PRKAA1Q13131 559 aa11.14□□□□□ -0.63
CUX1-204ENST00000393824 LRP8Q14114 963 aa11.14□□□□□ -0.63
CUX1-204ENST00000393824 CCDC14Q49A88 953 aa11.14□□□□□ -0.63
CUX1-204ENST00000393824 VARS2Q5ST30 1063 aaKnown RBP11.14□□□□□ -0.63
CUX1-204ENST00000393824 AGAP7PQ5VUJ5 663 aa11.14□□□□□ -0.63
CUX1-204ENST00000393824 GALNT18Q6P9A2 607 aa11.14□□□□□ -0.63
CUX1-204ENST00000393824 KCNT2Q6UVM3 1135 aa11.14□□□□□ -0.63
CUX1-204ENST00000393824 KCTD8Q6ZWB6 473 aa11.14□□□□□ -0.63
CUX1-204ENST00000393824 GPRIN1Q7Z2K8 1008 aa11.14□□□□□ -0.63
CUX1-204ENST00000393824 C14orf80Q86SX3 495 aa11.14□□□□□ -0.63
CUX1-204ENST00000393824 ZMIZ2Q8NF64 920 aa11.14□□□□□ -0.63
CUX1-204ENST00000393824 AGR3Q8TD06 166 aa11.14□□□□□ -0.63
CUX1-204ENST00000393824 SLC35F5Q8WV83 523 aa11.14□□□□□ -0.63
CUX1-204ENST00000393824 ARNTL2Q8WYA1 636 aa11.14□□□□□ -0.63
CUX1-204ENST00000393824 PPWD1Q96BP3 646 aaKnown RBP11.14□□□□□ -0.63
CUX1-204ENST00000393824 YME1L1Q96TA2 773 aa11.14□□□□□ -0.63
CUX1-204ENST00000393824 CPNE1Q99829 537 aa11.14□□□□□ -0.63
CUX1-204ENST00000393824 MRPL9Q9BYD2 267 aaKnown RBP11.14□□□□□ -0.63
CUX1-204ENST00000393824 MID2Q9UJV3 735 aa11.14□□□□□ -0.63
CUX1-204ENST00000393824 PDE4DIPQ5VU43 2346 aa11.14□□□□□ -0.63
CUX1-204ENST00000393824 PRORSD1PA6NEY8 169 aa11.14□□□□□ -0.63
CUX1-204ENST00000393824 HOXA2O43364 376 aa11.14□□□□□ -0.63
CUX1-204ENST00000393824 JUNBP17275 347 aaPredicted RBP11.14□□□□□ -0.63
CUX1-204ENST00000393824 ALDH7A1P49419 539 aaKnown RBP11.14□□□□□ -0.63
CUX1-204ENST00000393824 SNX16P57768 344 aa11.14□□□□□ -0.63
CUX1-204ENST00000393824 MPP1Q00013 466 aa11.14□□□□□ -0.63
CUX1-204ENST00000393824 STX5Q13190 355 aa11.14□□□□□ -0.63
CUX1-204ENST00000393824 PPIGQ13427 754 aaKnown RBP eCLIP11.14□□□□□ -0.638e-7■■■□□ 18.1
CUX1-204ENST00000393824 TUBA3CQ13748 450 aa11.14□□□□□ -0.63
CUX1-204ENST00000393824 PUS10Q3MIT2 529 aaKnown RBP11.14□□□□□ -0.63
CUX1-204ENST00000393824 SH3PXD2AQ5TCZ1 1133 aa11.14□□□□□ -0.63
CUX1-204ENST00000393824 OR6B2Q6IFH4 312 aa11.14□□□□□ -0.63
CUX1-204ENST00000393824 ABRAXAS1Q6UWZ7 409 aa11.14□□□□□ -0.63
CUX1-204ENST00000393824 CYP2U1Q7Z449 544 aa11.14□□□□□ -0.63
CUX1-204ENST00000393824 TMEM86AQ8N2M4 240 aa11.14□□□□□ -0.63
CUX1-204ENST00000393824 USP33Q8TEY7 942 aa11.14□□□□□ -0.63
CUX1-204ENST00000393824 AUTS2Q8WXX7 1259 aa11.14□□□□□ -0.63
CUX1-204ENST00000393824 MYLPFQ96A32 169 aa11.14□□□□□ -0.63
CUX1-204ENST00000393824 IGSF21Q96ID5 467 aa11.14□□□□□ -0.63
CUX1-204ENST00000393824 PGLYRP2Q96PD5 576 aa11.14□□□□□ -0.63
CUX1-204ENST00000393824 CRISPLD1Q9H336 500 aa11.14□□□□□ -0.63
CUX1-204ENST00000393824 C8orf4Q9NR00 106 aa11.14□□□□□ -0.63
CUX1-204ENST00000393824 MRGBPQ9NV56 204 aa11.14□□□□□ -0.63
CUX1-204ENST00000393824 TXNDC16Q9P2K2 825 aa11.14□□□□□ -0.63
CUX1-204ENST00000393824 RABL2AQ9UBK7 228 aaPredicted RBP11.14□□□□□ -0.63
CUX1-204ENST00000393824 KLHL3Q9UH77 587 aa11.14□□□□□ -0.63
CUX1-204ENST00000393824 DAPK2Q9UIK4 370 aa11.14□□□□□ -0.63
CUX1-204ENST00000393824 PSME2Q9UL46 239 aa11.14□□□□□ -0.63
CUX1-204ENST00000393824 ERVK-11Q9UQG0 969 aa11.14□□□□□ -0.63
CUX1-204ENST00000393824 PRELID1Q9Y255 219 aa11.14□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 36.3 ms