RNA–Protein interactions for RNA: ENST00000378839.1

CCDC3-202, Transcript of coiled-coil domain containing 3, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene CCDC3, Length 3,180 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3-202ENST00000378839 RBBP5Q15291 538 aaKnown RBP13.37□□□□□ -0.27
CCDC3-202ENST00000378839 FAM45BPQ6NSW5 357 aa13.37□□□□□ -0.27
CCDC3-202ENST00000378839 PAOXQ6QHF9 649 aa13.37□□□□□ -0.27
CCDC3-202ENST00000378839 LARP4Q71RC2 724 aaKnown RBP eCLIP13.37□□□□□ -0.27
CCDC3-202ENST00000378839 FAM126BQ8IXS8 530 aa13.37□□□□□ -0.27
CCDC3-202ENST00000378839 BHLHE22Q8NFJ8 381 aaPredicted RBP13.37□□□□□ -0.27
CCDC3-202ENST00000378839 OR4L1Q8NH43 312 aa13.37□□□□□ -0.27
CCDC3-202ENST00000378839 FAM45AQ8TCE6 357 aa13.37□□□□□ -0.27
CCDC3-202ENST00000378839 LRCH3Q96II8 777 aa13.37□□□□□ -0.27
CCDC3-202ENST00000378839 CCDC167Q9P0B6 97 aa13.37□□□□□ -0.27
CCDC3-202ENST00000378839 DNAJC15Q9Y5T4 150 aa13.37□□□□□ -0.27
CCDC3-202ENST00000378839 ZNF840PA6NDX5 716 aa13.36□□□□□ -0.27
CCDC3-202ENST00000378839 TBKBP1A7MCY6 615 aa13.36□□□□□ -0.27
CCDC3-202ENST00000378839 TSPAN3O60637 253 aa13.36□□□□□ -0.27
CCDC3-202ENST00000378839 CDK14O94921 469 aa13.36□□□□□ -0.27
CCDC3-202ENST00000378839 PYGLP06737 847 aa13.36□□□□□ -0.27
CCDC3-202ENST00000378839 HLA-DPA1P20036 260 aa13.36□□□□□ -0.27
CCDC3-202ENST00000378839 ADSLP30566 484 aaPredicted RBP13.36□□□□□ -0.27
CCDC3-202ENST00000378839 SCNN1BP51168 640 aa13.36□□□□□ -0.27
CCDC3-202ENST00000378839 STC1P52823 247 aa13.36□□□□□ -0.27
CCDC3-202ENST00000378839 INHBCP55103 352 aa13.36□□□□□ -0.27
CCDC3-202ENST00000378839 HERVK_113P63132 956 aa13.36□□□□□ -0.27
CCDC3-202ENST00000378839 OGFRL1Q5TC84 451 aaPredicted RBP13.36□□□□□ -0.27
CCDC3-202ENST00000378839 KLC3Q6P597 504 aa13.36□□□□□ -0.27
CCDC3-202ENST00000378839 FUNDC1Q8IVP5 155 aa13.36□□□□□ -0.27
CCDC3-202ENST00000378839 ATOH8Q96SQ7 321 aa13.36□□□□□ -0.27
CCDC3-202ENST00000378839 AARSD1Q9BTE6 412 aaKnown RBP13.36□□□□□ -0.27
CCDC3-202ENST00000378839 ERVK-6Q9BXR3 956 aa13.36□□□□□ -0.27
CCDC3-202ENST00000378839 KLHL4Q9C0H6 718 aa13.36□□□□□ -0.27
CCDC3-202ENST00000378839 PCDHAC1Q9H158 963 aa13.36□□□□□ -0.27
CCDC3-202ENST00000378839 TUBB1Q9H4B7 451 aa13.36□□□□□ -0.27
CCDC3-202ENST00000378839 EFCAB1Q9HAE3 211 aa13.36□□□□□ -0.27
CCDC3-202ENST00000378839 PCDHGC4Q9Y5F7 938 aa13.36□□□□□ -0.27
CCDC3-202ENST00000378839 CAPN8A6NHC0 703 aa13.36□□□□□ -0.27
CCDC3-202ENST00000378839 EPOP01588 193 aa13.36□□□□□ -0.27
CCDC3-202ENST00000378839 TYSND1Q2T9J0 566 aa13.36□□□□□ -0.27
CCDC3-202ENST00000378839 PAQR3Q6TCH7 311 aa13.36□□□□□ -0.27
CCDC3-202ENST00000378839 C16orf59Q7L2K0 433 aa13.36□□□□□ -0.27
CCDC3-202ENST00000378839 PIANPQ8IYJ0 282 aa13.36□□□□□ -0.27
CCDC3-202ENST00000378839 PTGR2Q8N8N7 351 aaPredicted RBP13.36□□□□□ -0.27
CCDC3-202ENST00000378839 OR4K2Q8NGD2 314 aa13.36□□□□□ -0.27
CCDC3-202ENST00000378839 NAT14Q8WUY8 206 aa13.36□□□□□ -0.27
CCDC3-202ENST00000378839 PSKH2Q96QS6 385 aa13.36□□□□□ -0.27
CCDC3-202ENST00000378839 TSEN34Q9BSV6 310 aaKnown RBP13.36□□□□□ -0.27
CCDC3-202ENST00000378839 CATSPERZQ9NTU4 200 aa13.36□□□□□ -0.27
CCDC3-202ENST00000378839 FAM50BQ9Y247 325 aa13.36□□□□□ -0.27
CCDC3-202ENST00000378839 C2orf78A6NCI8 922 aa13.36□□□□□ -0.27
CCDC3-202ENST00000378839 OR1I1O60431 355 aa13.36□□□□□ -0.27
CCDC3-202ENST00000378839 NDST3O95803 873 aa13.36□□□□□ -0.27
CCDC3-202ENST00000378839 ALDH1A1P00352 501 aa13.36□□□□□ -0.27
CCDC3-202ENST00000378839 COL6A1P12109 1028 aa13.36□□□□□ -0.27
CCDC3-202ENST00000378839 OR1D2P34982 312 aa13.36□□□□□ -0.27
CCDC3-202ENST00000378839 ATP5C1P36542 298 aaKnown RBP13.36□□□□□ -0.27
CCDC3-202ENST00000378839 KPNA2P52292 529 aaKnown RBP13.36□□□□□ -0.27
CCDC3-202ENST00000378839 RALGDSQ12967 914 aa13.36□□□□□ -0.27
CCDC3-202ENST00000378839 FLOT2Q14254 428 aa13.36□□□□□ -0.27
CCDC3-202ENST00000378839 PFKFB4Q16877 469 aa13.36□□□□□ -0.27
CCDC3-202ENST00000378839 DEFB115Q30KQ5 88 aa13.36□□□□□ -0.27
CCDC3-202ENST00000378839 AGKQ53H12 422 aa13.36□□□□□ -0.27
CCDC3-202ENST00000378839 LINGO4Q6UY18 593 aa13.36□□□□□ -0.27
CCDC3-202ENST00000378839 RAET1EQ8TD07 263 aa13.36□□□□□ -0.27
CCDC3-202ENST00000378839 CCDC97Q96F63 343 aaPredicted RBP13.36□□□□□ -0.27
CCDC3-202ENST00000378839 TSC22D3Q99576 134 aa13.36□□□□□ -0.27
CCDC3-202ENST00000378839 SLC39A3Q9BRY0 314 aa13.36□□□□□ -0.27
CCDC3-202ENST00000378839 CACNA2D2Q9NY47 1150 aa13.36□□□□□ -0.27
CCDC3-202ENST00000378839 RIMS3Q9UJD0 308 aa13.36□□□□□ -0.27
CCDC3-202ENST00000378839 DNMT3LQ9UJW3 386 aa13.36□□□□□ -0.27
CCDC3-202ENST00000378839 PHF24Q9UPV7 400 aa13.36□□□□□ -0.27
CCDC3-202ENST00000378839 ASB3Q9Y575 518 aa13.36□□□□□ -0.27
CCDC3-202ENST00000378839 C9JVG2 144 aa13.35□□□□□ -0.27
CCDC3-202ENST00000378839 UBDO15205 165 aa13.35□□□□□ -0.27
CCDC3-202ENST00000378839 KDELR3O43731 214 aa13.35□□□□□ -0.27
CCDC3-202ENST00000378839 STC2O76061 302 aa13.35□□□□□ -0.27
CCDC3-202ENST00000378839 SNUPNO95149 360 aaKnown RBP13.35□□□□□ -0.27
CCDC3-202ENST00000378839 SERPINF2P08697 491 aa13.35□□□□□ -0.27
CCDC3-202ENST00000378839 FMO4P31512 558 aa13.35□□□□□ -0.27
CCDC3-202ENST00000378839 NFKB2Q00653 900 aa13.35□□□□□ -0.27
CCDC3-202ENST00000378839 ART3Q13508 389 aa13.35□□□□□ -0.27
CCDC3-202ENST00000378839 RFTN1Q14699 578 aaPredicted RBP13.35□□□□□ -0.27
CCDC3-202ENST00000378839 REP15Q6BDI9 236 aa13.35□□□□□ -0.27
CCDC3-202ENST00000378839 PQLC1Q8N2U9 271 aa13.35□□□□□ -0.27
CCDC3-202ENST00000378839 LPGAT1Q92604 370 aa13.35□□□□□ -0.27
CCDC3-202ENST00000378839 CCDC126Q96EE4 140 aa13.35□□□□□ -0.27
CCDC3-202ENST00000378839 BIRC8Q96P09 236 aa13.35□□□□□ -0.27
CCDC3-202ENST00000378839 AKTIPQ9H8T0 292 aa13.35□□□□□ -0.27
CCDC3-202ENST00000378839 NLE1Q9NVX2 485 aaPredicted RBP13.35□□□□□ -0.27
CCDC3-202ENST00000378839 ETAA1Q9NY74 926 aa13.35□□□□□ -0.27
CCDC3-202ENST00000378839 MAGEA13PA6NCF6 341 aa13.35□□□□□ -0.27
CCDC3-202ENST00000378839 PRAMEF12O95522 483 aa13.35□□□□□ -0.27
CCDC3-202ENST00000378839 ALDH1A3P47895 512 aa13.35□□□□□ -0.27
CCDC3-202ENST00000378839 NME5P56597 212 aa13.35□□□□□ -0.27
CCDC3-202ENST00000378839 PSME3P61289 254 aa13.35□□□□□ -0.27
CCDC3-202ENST00000378839 ECT2LQ008S8 904 aa13.35□□□□□ -0.27
CCDC3-202ENST00000378839 GALNT1Q10472 559 aaPredicted RBP13.35□□□□□ -0.27
CCDC3-202ENST00000378839 FASTKQ14296 549 aaKnown RBP13.35□□□□□ -0.27
CCDC3-202ENST00000378839 GRB7Q14451 532 aa13.35□□□□□ -0.27
CCDC3-202ENST00000378839 CXorf57Q6NSI4 855 aaKnown RBP13.35□□□□□ -0.27
CCDC3-202ENST00000378839 NPAS4Q8IUM7 802 aa13.35□□□□□ -0.27
CCDC3-202ENST00000378839 PHYKPLQ8IUZ5 450 aa13.35□□□□□ -0.27
CCDC3-202ENST00000378839 FAM110BQ8TC76 370 aa13.35□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 35.9 ms