RNA–Protein interactions for RNA: ENST00000375820.8

COL4A1-201, Transcript of collagen type IV alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL4A1, Length 6,532 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1-201ENST00000375820 LRRC17Q8N6Y2 441 aa13.71□□□□□ -0.21
COL4A1-201ENST00000375820 DLG3Q92796 817 aa13.71□□□□□ -0.21
COL4A1-201ENST00000375820 UBE2E3Q969T4 207 aa13.71□□□□□ -0.21
COL4A1-201ENST00000375820 ACO2Q99798 780 aaKnown RBP13.71□□□□□ -0.21
COL4A1-201ENST00000375820 MRPL57Q9BQC6 102 aaKnown RBP13.71□□□□□ -0.21
COL4A1-201ENST00000375820 WRAP53Q9BUR4 548 aaKnown RBP13.71□□□□□ -0.21
COL4A1-201ENST00000375820 AZIN1O14977 448 aa13.71□□□□□ -0.22
COL4A1-201ENST00000375820 CYP1A2P05177 515 aa13.71□□□□□ -0.22
COL4A1-201ENST00000375820 HTR1BP28222 390 aa13.71□□□□□ -0.22
COL4A1-201ENST00000375820 DCTN2Q13561 401 aaKnown RBP13.71□□□□□ -0.22
COL4A1-201ENST00000375820 CAPSQ13938 189 aa13.71□□□□□ -0.22
COL4A1-201ENST00000375820 C1GALT1C1Q96EU7 318 aa13.71□□□□□ -0.22
COL4A1-201ENST00000375820 COX4I2Q96KJ9 171 aa13.71□□□□□ -0.22
COL4A1-201ENST00000375820 LMLNQ96KR4 655 aa13.71□□□□□ -0.22
COL4A1-201ENST00000375820 C5orf34Q96MH7 638 aa13.71□□□□□ -0.22
COL4A1-201ENST00000375820 CDT1Q9H211 546 aa13.71□□□□□ -0.22
COL4A1-201ENST00000375820 PCP4L1A6NKN8 68 aa13.71□□□□□ -0.22
COL4A1-201ENST00000375820 SUV39H1O43463 412 aa13.71□□□□□ -0.22
COL4A1-201ENST00000375820 TLL1O43897 1013 aa13.71□□□□□ -0.22
COL4A1-201ENST00000375820 SEMA3DO95025 777 aa13.71□□□□□ -0.22
COL4A1-201ENST00000375820 SAGP10523 405 aaPredicted RBP13.71□□□□□ -0.22
COL4A1-201ENST00000375820 DUSP4Q13115 394 aa13.71□□□□□ -0.22
COL4A1-201ENST00000375820 PRSS58Q8IYP2 241 aa13.71□□□□□ -0.22
COL4A1-201ENST00000375820 SPATA5L1Q9BVQ7 753 aa13.71□□□□□ -0.22
COL4A1-201ENST00000375820 NXF3Q9H4D5 531 aaKnown RBP13.71□□□□□ -0.22
COL4A1-201ENST00000375820 C3orf18Q9UK00 162 aa13.71□□□□□ -0.22
COL4A1-201ENST00000375820 ACTL7BQ9Y614 415 aa13.71□□□□□ -0.22
COL4A1-201ENST00000375820 BAZ2BQ9UIF8 2168 aaKnown RBP13.71□□□□□ -0.22
COL4A1-201ENST00000375820 WWP2O00308 870 aa13.7□□□□□ -0.22
COL4A1-201ENST00000375820 IRF6O14896 467 aa13.7□□□□□ -0.22
COL4A1-201ENST00000375820 AXIN1O15169 862 aa13.7□□□□□ -0.22
COL4A1-201ENST00000375820 RGS20O76081 388 aa13.7□□□□□ -0.22
COL4A1-201ENST00000375820 CHRM5P08912 532 aaPredicted RBP13.7□□□□□ -0.22
COL4A1-201ENST00000375820 SSR2P43308 183 aa13.7□□□□□ -0.22
COL4A1-201ENST00000375820 ZNF846Q147U1 533 aa13.7□□□□□ -0.22
COL4A1-201ENST00000375820 PIK3R6Q5UE93 754 aa13.7□□□□□ -0.22
COL4A1-201ENST00000375820 TSEN15Q8WW01 171 aaKnown RBP13.7□□□□□ -0.22
COL4A1-201ENST00000375820 NKD1Q969G9 470 aa13.7□□□□□ -0.22
COL4A1-201ENST00000375820 PTCD3Q96EY7 689 aaKnown RBP13.7□□□□□ -0.22
COL4A1-201ENST00000375820 OXCT2Q9BYC2 517 aaPredicted RBP13.7□□□□□ -0.22
COL4A1-201ENST00000375820 SNX3O60493 162 aa13.7□□□□□ -0.22
COL4A1-201ENST00000375820 ITGA2P17301 1181 aa13.7□□□□□ -0.22
COL4A1-201ENST00000375820 ARF4P18085 180 aaPredicted RBP13.7□□□□□ -0.22
COL4A1-201ENST00000375820 LPOP22079 712 aaPredicted RBP13.7□□□□□ -0.22
COL4A1-201ENST00000375820 CIR1Q86X95 450 aaPredicted RBP13.7□□□□□ -0.22
COL4A1-201ENST00000375820 HBEGFQ99075 208 aa13.7□□□□□ -0.22
COL4A1-201ENST00000375820 MTFR1LQ9H019 292 aa13.7□□□□□ -0.22
COL4A1-201ENST00000375820 DDX52Q9Y2R4 599 aaKnown RBP eCLIP13.7□□□□□ -0.22
COL4A1-201ENST00000375820 SH3D21A4FU49 640 aa13.7□□□□□ -0.22
COL4A1-201ENST00000375820 TLR5O60602 858 aa13.7□□□□□ -0.22
COL4A1-201ENST00000375820 UGT2B17O75795 530 aa13.7□□□□□ -0.22
COL4A1-201ENST00000375820 STBD1O95210 358 aa13.7□□□□□ -0.22
COL4A1-201ENST00000375820 RASGRP1O95267 797 aa13.7□□□□□ -0.22
COL4A1-201ENST00000375820 S100A9P06702 114 aaKnown RBP13.7□□□□□ -0.22
COL4A1-201ENST00000375820 PRKG2Q13237 762 aa13.7□□□□□ -0.22
COL4A1-201ENST00000375820 APOBEC3HQ6NTF7 200 aaKnown RBP13.7□□□□□ -0.22
COL4A1-201ENST00000375820 JAZF1Q86VZ6 243 aa13.7□□□□□ -0.22
COL4A1-201ENST00000375820 GPR65Q8IYL9 337 aa13.7□□□□□ -0.22
COL4A1-201ENST00000375820 LNX2Q8N448 690 aa13.7□□□□□ -0.22
COL4A1-201ENST00000375820 FIBCD1Q8N539 461 aa13.7□□□□□ -0.22
COL4A1-201ENST00000375820 AMER2Q8N7J2 671 aa13.7□□□□□ -0.22
COL4A1-201ENST00000375820 IL31RAQ8NI17 732 aa13.7□□□□□ -0.22
COL4A1-201ENST00000375820 ZNF483Q8TF39 744 aaPredicted RBP13.7□□□□□ -0.22
COL4A1-201ENST00000375820 WDR60Q8WVS4 1066 aa13.7□□□□□ -0.22
COL4A1-201ENST00000375820 DNASE1L2Q92874 299 aa13.7□□□□□ -0.22
COL4A1-201ENST00000375820 PPM1MQ96MI6 270 aa13.7□□□□□ -0.22
COL4A1-201ENST00000375820 TBC1D24Q9ULP9 559 aa13.7□□□□□ -0.22
COL4A1-201ENST00000375820 GTF3C5Q9Y5Q8 519 aaPredicted RBP13.7□□□□□ -0.22
COL4A1-201ENST00000375820 ZNF432O94892 652 aa13.7□□□□□ -0.22
COL4A1-201ENST00000375820 AP2A2O94973 939 aa13.7□□□□□ -0.22
COL4A1-201ENST00000375820 SEPHS1P49903 392 aa13.7□□□□□ -0.22
COL4A1-201ENST00000375820 FMO1Q01740 532 aa13.7□□□□□ -0.22
COL4A1-201ENST00000375820 GSDMCQ9BYG8 508 aa13.7□□□□□ -0.22
COL4A1-201ENST00000375820 CFAP97Q9P2B7 532 aa13.7□□□□□ -0.22
COL4A1-201ENST00000375820 LOC110117498-PIK3R3F6TDL0 507 aa13.7□□□□□ -0.22
COL4A1-201ENST00000375820 PAGE1O75459 146 aa13.7□□□□□ -0.22
COL4A1-201ENST00000375820 MTHFRP42898 656 aa13.7□□□□□ -0.22
COL4A1-201ENST00000375820 ZNF132P52740 706 aa13.7□□□□□ -0.22
COL4A1-201ENST00000375820 LRRC73Q5JTD7 316 aa13.7□□□□□ -0.22
COL4A1-201ENST00000375820 RFWD3Q6PCD5 774 aa13.7□□□□□ -0.22
COL4A1-201ENST00000375820 ZNF730Q6ZMV8 503 aa13.7□□□□□ -0.22
COL4A1-201ENST00000375820 CD101Q93033 1021 aa13.7□□□□□ -0.22
COL4A1-201ENST00000375820 EXOSC8Q96B26 276 aaKnown RBP13.7□□□□□ -0.22
COL4A1-201ENST00000375820 EBPLQ9BY08 206 aa13.7□□□□□ -0.22
COL4A1-201ENST00000375820 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP13.7□□□□□ -0.22
COL4A1-201ENST00000375820 DHRS7Q9Y394 339 aa13.7□□□□□ -0.22
COL4A1-201ENST00000375820 PMF1-BGLAPU3KQ54 211 aa13.7□□□□□ -0.22
COL4A1-201ENST00000375820 RNF17Q9BXT8 1623 aaKnown RBP13.69□□□□□ -0.22
COL4A1-201ENST00000375820 PRR5-ARHGAP8B1AHC4 643 aa13.69□□□□□ -0.22
COL4A1-201ENST00000375820 CXCR3P49682 368 aa13.69□□□□□ -0.22
COL4A1-201ENST00000375820 ARHGAP8P85298 464 aa13.69□□□□□ -0.22
COL4A1-201ENST00000375820 FCHO2Q0JRZ9 810 aa13.69□□□□□ -0.22
COL4A1-201ENST00000375820 SIM2Q14190 667 aaPredicted RBP13.69□□□□□ -0.22
COL4A1-201ENST00000375820 ZBTB6Q15916 424 aa13.69□□□□□ -0.22
COL4A1-201ENST00000375820 JOSD2Q8TAC2 188 aa13.69□□□□□ -0.22
COL4A1-201ENST00000375820 XAGE5Q8WWM1 108 aa13.69□□□□□ -0.22
COL4A1-201ENST00000375820 APOLD1Q96LR9 279 aa13.69□□□□□ -0.22
COL4A1-201ENST00000375820 CDH19Q9H159 772 aa13.69□□□□□ -0.22
COL4A1-201ENST00000375820 GIT1Q9Y2X7 761 aa13.69□□□□□ -0.22
COL4A1-201ENST00000375820 IQGAP3Q86VI3 1631 aa13.69□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 51.4 ms