RNA–Protein interactions for RNA: ENST00000347617.10

HMGA1-202, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene HMGA1, Length 1,773 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-202ENST00000347617 GTSE1Q9NYZ3 720 aa15.9■□□□□ 0.14
HMGA1-202ENST00000347617 XPR1Q9UBH6 696 aa15.9■□□□□ 0.14
HMGA1-202ENST00000347617 DSEQ9UL01 958 aa15.9■□□□□ 0.14
HMGA1-202ENST00000347617 ADAM23O75077 832 aa15.89■□□□□ 0.13
HMGA1-202ENST00000347617 JUNP05412 331 aaKnown RBP15.89■□□□□ 0.13
HMGA1-202ENST00000347617 STMN1P16949 149 aa15.89■□□□□ 0.13
HMGA1-202ENST00000347617 GRIA3P42263 894 aa15.89■□□□□ 0.13
HMGA1-202ENST00000347617 CCT8P50990 548 aa15.89■□□□□ 0.13
HMGA1-202ENST00000347617 SCNN1GP51170 649 aa15.89■□□□□ 0.13
HMGA1-202ENST00000347617 CLCNKBP51801 687 aa15.89■□□□□ 0.13
HMGA1-202ENST00000347617 CDH17Q12864 832 aa15.89■□□□□ 0.13
HMGA1-202ENST00000347617 TUSC3Q13454 348 aa15.89■□□□□ 0.13
HMGA1-202ENST00000347617 BFSP2Q13515 415 aa15.89■□□□□ 0.13
HMGA1-202ENST00000347617 PRPSAP1Q14558 356 aa15.89■□□□□ 0.13
HMGA1-202ENST00000347617 FAM182AQ5T1J6 154 aa15.89■□□□□ 0.13
HMGA1-202ENST00000347617 EGFLAMQ63HQ2 1017 aa15.89■□□□□ 0.13
HMGA1-202ENST00000347617 NAPEPLDQ6IQ20 393 aa15.89■□□□□ 0.13
HMGA1-202ENST00000347617 CYP2R1Q6VVX0 501 aa15.89■□□□□ 0.13
HMGA1-202ENST00000347617 TMEM26Q6ZUK4 368 aa15.89■□□□□ 0.13
HMGA1-202ENST00000347617 USP51Q70EK9 711 aa15.89■□□□□ 0.13
HMGA1-202ENST00000347617 CCDC117Q8IWD4 279 aaPredicted RBP15.89■□□□□ 0.13
HMGA1-202ENST00000347617 CENPLQ8N0S6 344 aaPredicted RBP15.89■□□□□ 0.13
HMGA1-202ENST00000347617 MINDY1Q8N5J2 469 aa15.89■□□□□ 0.13
HMGA1-202ENST00000347617 TRPV3Q8NET8 790 aa15.89■□□□□ 0.13
HMGA1-202ENST00000347617 KCTD13Q8WZ19 329 aa15.89■□□□□ 0.13
HMGA1-202ENST00000347617 CASP10Q92851 521 aa15.89■□□□□ 0.13
HMGA1-202ENST00000347617 LPPQ93052 612 aa15.89■□□□□ 0.13
HMGA1-202ENST00000347617 CYP2S1Q96SQ9 504 aa15.89■□□□□ 0.13
HMGA1-202ENST00000347617 PSD2Q9BQI7 771 aa15.89■□□□□ 0.13
HMGA1-202ENST00000347617 DUSP16Q9BY84 665 aa15.89■□□□□ 0.13
HMGA1-202ENST00000347617 GMIPQ9P107 970 aa15.89■□□□□ 0.13
HMGA1-202ENST00000347617 PSME2Q9UL46 239 aa15.89■□□□□ 0.13
HMGA1-202ENST00000347617 TRIM17Q9Y577 477 aa15.89■□□□□ 0.13
HMGA1-202ENST00000347617 PTCH2Q9Y6C5 1203 aa15.89■□□□□ 0.13
HMGA1-202ENST00000347617 FRMPD3Q5JV73 1810 aa15.89■□□□□ 0.13
HMGA1-202ENST00000347617 SEC14L2O76054 403 aa15.88■□□□□ 0.13
HMGA1-202ENST00000347617 TFPTP0C1Z6 253 aa15.88■□□□□ 0.13
HMGA1-202ENST00000347617 PTPN3P26045 913 aa15.88■□□□□ 0.13
HMGA1-202ENST00000347617 MATKP42679 507 aa15.88■□□□□ 0.13
HMGA1-202ENST00000347617 SLC7A2P52569 658 aa15.88■□□□□ 0.13
HMGA1-202ENST00000347617 ZNF135P52742 658 aaPredicted RBP15.88■□□□□ 0.13
HMGA1-202ENST00000347617 ILF2Q12905 390 aaKnown RBP15.88■□□□□ 0.13
HMGA1-202ENST00000347617 RALGDSQ12967 914 aa15.88■□□□□ 0.13
HMGA1-202ENST00000347617 TRIM16LQ309B1 348 aa15.88■□□□□ 0.13
HMGA1-202ENST00000347617 SLC25A52Q3SY17 297 aa15.88■□□□□ 0.13
HMGA1-202ENST00000347617 FGD3Q5JSP0 725 aa15.88■□□□□ 0.13
HMGA1-202ENST00000347617 WSCD1Q658N2 575 aa15.88■□□□□ 0.13
HMGA1-202ENST00000347617 OSTM1Q86WC4 334 aa15.88■□□□□ 0.13
HMGA1-202ENST00000347617 SLC22A9Q8IVM8 553 aa15.88■□□□□ 0.13
HMGA1-202ENST00000347617 SFRP1Q8N474 314 aa15.88■□□□□ 0.13
HMGA1-202ENST00000347617 SNX31Q8N9S9 440 aa15.88■□□□□ 0.13
HMGA1-202ENST00000347617 HMGCLL1Q8TB92 370 aa15.88■□□□□ 0.13
HMGA1-202ENST00000347617 MYRFLQ96LU7 910 aa15.88■□□□□ 0.13
HMGA1-202ENST00000347617 GPR78Q96P69 363 aa15.88■□□□□ 0.13
HMGA1-202ENST00000347617 ZNF347Q96SE7 839 aa15.88■□□□□ 0.13
HMGA1-202ENST00000347617 BCL7BQ9BQE9 202 aa15.88■□□□□ 0.13
HMGA1-202ENST00000347617 WDR12Q9GZL7 423 aaKnown RBP15.88■□□□□ 0.13
HMGA1-202ENST00000347617 PAK6Q9NQU5 681 aaPredicted RBP15.88■□□□□ 0.13
HMGA1-202ENST00000347617 FAM49BQ9NUQ9 324 aa15.88■□□□□ 0.13
HMGA1-202ENST00000347617 INTS10Q9NVR2 710 aaKnown RBP15.88■□□□□ 0.13
HMGA1-202ENST00000347617 PIH1D1Q9NWS0 290 aaKnown RBP15.88■□□□□ 0.13
HMGA1-202ENST00000347617 CDH9Q9ULB4 789 aa15.88■□□□□ 0.13
HMGA1-202ENST00000347617 TTC24A2A3L6 582 aaPredicted RBP15.87■□□□□ 0.13
HMGA1-202ENST00000347617 F5H423 210 aaPredicted RBP15.87■□□□□ 0.13
HMGA1-202ENST00000347617 M0QZQ0 153 aa15.87■□□□□ 0.13
HMGA1-202ENST00000347617 DAB1O75553 588 aa15.87■□□□□ 0.13
HMGA1-202ENST00000347617 SELPP16109 830 aa15.87■□□□□ 0.13
HMGA1-202ENST00000347617 ATP6V1B2P21281 511 aa15.87■□□□□ 0.13
HMGA1-202ENST00000347617 S100A1P23297 94 aa15.87■□□□□ 0.13
HMGA1-202ENST00000347617 PCSK1P29120 753 aa15.87■□□□□ 0.13
HMGA1-202ENST00000347617 CCR10P46092 362 aa15.87■□□□□ 0.13
HMGA1-202ENST00000347617 DCAF6Q58WW2 860 aa15.87■□□□□ 0.13
HMGA1-202ENST00000347617 BROXQ5VW32 411 aa15.87■□□□□ 0.13
HMGA1-202ENST00000347617 XKR5Q6UX68 686 aa15.87■□□□□ 0.13
HMGA1-202ENST00000347617 PTAR1Q7Z6K3 402 aaPredicted RBP15.87■□□□□ 0.13
HMGA1-202ENST00000347617 EPHX4Q8IUS5 362 aa15.87■□□□□ 0.13
HMGA1-202ENST00000347617 TBC1D21Q8IYX1 336 aa15.87■□□□□ 0.13
HMGA1-202ENST00000347617 PAPD5Q8NDF8 572 aaKnown RBP15.87■□□□□ 0.13
HMGA1-202ENST00000347617 TSPEARQ8WU66 669 aa15.87■□□□□ 0.13
HMGA1-202ENST00000347617 PTCD2Q8WV60 388 aaKnown RBP15.87■□□□□ 0.13
HMGA1-202ENST00000347617 S100ZQ8WXG8 99 aa15.87■□□□□ 0.13
HMGA1-202ENST00000347617 ZNF641Q96N77 438 aaPredicted RBP15.87■□□□□ 0.13
HMGA1-202ENST00000347617 MROQ9BYG7 248 aa15.87■□□□□ 0.13
HMGA1-202ENST00000347617 POMKQ9H5K3 350 aa15.87■□□□□ 0.13
HMGA1-202ENST00000347617 ELAC1Q9H777 363 aaKnown RBP15.87■□□□□ 0.13
HMGA1-202ENST00000347617 TRNAU1APQ9NX07 287 aaKnown RBP15.87■□□□□ 0.13
HMGA1-202ENST00000347617 MBL2P11226 248 aaPredicted RBP15.87■□□□□ 0.13
HMGA1-202ENST00000347617 ODC1P11926 461 aa15.87■□□□□ 0.13
HMGA1-202ENST00000347617 ZNF24P17028 368 aa15.87■□□□□ 0.13
HMGA1-202ENST00000347617 HCAR3P49019 387 aa15.87■□□□□ 0.13
HMGA1-202ENST00000347617 AFF1P51825 1210 aaKnown RBP15.87■□□□□ 0.13
HMGA1-202ENST00000347617 OCA2Q04671 838 aa15.87■□□□□ 0.13
HMGA1-202ENST00000347617 TRAF2Q12933 501 aa15.87■□□□□ 0.13
HMGA1-202ENST00000347617 BNIP3Q12983 259 aa15.87■□□□□ 0.13
HMGA1-202ENST00000347617 ATP1A4Q13733 1029 aa15.87■□□□□ 0.13
HMGA1-202ENST00000347617 RBM48Q5RL73 367 aaKnown RBP15.87■□□□□ 0.13
HMGA1-202ENST00000347617 OGFOD2Q6N063 350 aa15.87■□□□□ 0.13
HMGA1-202ENST00000347617 FKBP9P1Q75LS8 142 aa15.87■□□□□ 0.13
HMGA1-202ENST00000347617 RTN4RL1Q86UN2 441 aaPredicted RBP15.87■□□□□ 0.13
HMGA1-202ENST00000347617 KLHDC8BQ8IXV7 354 aa15.87■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 34.7 ms