RNA–Protein interactions for RNA: ENST00000278386.10

CD44-203, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best) BASIC

Gene CD44, Length 484 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-203ENST00000278386 SLC30A9Q6PML9 568 aa12.75□□□□□ -0.37
CD44-203ENST00000278386 HSD11B1LQ7Z5J1 315 aa12.75□□□□□ -0.37
CD44-203ENST00000278386 TSPAN33Q86UF1 283 aa12.75□□□□□ -0.37
CD44-203ENST00000278386 TMEM159Q96B96 161 aa12.75□□□□□ -0.37
CD44-203ENST00000278386 CMKLR1Q99788 373 aa12.75□□□□□ -0.37
CD44-203ENST00000278386 NUP85Q9BW27 656 aa12.75□□□□□ -0.37
CD44-203ENST00000278386 HELZ2Q9BYK8 2649 aaKnown RBP12.75□□□□□ -0.37
CD44-203ENST00000278386 CDH19Q9H159 772 aa12.75□□□□□ -0.37
CD44-203ENST00000278386 ISCUQ9H1K1 167 aa12.75□□□□□ -0.37
CD44-203ENST00000278386 RDH14Q9HBH5 336 aa12.75□□□□□ -0.37
CD44-203ENST00000278386 PCDH18Q9HCL0 1135 aa12.75□□□□□ -0.37
CD44-203ENST00000278386 AKAP7Q9P0M2 348 aaPredicted RBP12.75□□□□□ -0.37
CD44-203ENST00000278386 TAAR2Q9P1P5 351 aa12.75□□□□□ -0.37
CD44-203ENST00000278386 SUFUQ9UMX1 484 aa12.75□□□□□ -0.37
CD44-203ENST00000278386 SSUH2Q9Y2M2 353 aa12.75□□□□□ -0.37
CD44-203ENST00000278386 TTLL3Q9Y4R7 772 aa12.75□□□□□ -0.37
CD44-203ENST00000278386 SDK2Q58EX2 2172 aa12.74□□□□□ -0.37
CD44-203ENST00000278386 PRAMEF33A0A0G2JMD5 474 aa12.74□□□□□ -0.37
CD44-203ENST00000278386 ZW10O43264 779 aa12.74□□□□□ -0.37
CD44-203ENST00000278386 MFSD11O43934 449 aa12.74□□□□□ -0.37
CD44-203ENST00000278386 PRAMEF10O60809 474 aa12.74□□□□□ -0.37
CD44-203ENST00000278386 PGLSO95336 258 aa12.74□□□□□ -0.37
CD44-203ENST00000278386 PEX11BO96011 259 aa12.74□□□□□ -0.37
CD44-203ENST00000278386 KRT10P13645 584 aa12.74□□□□□ -0.37
CD44-203ENST00000278386 ALDH4A1P30038 563 aa12.74□□□□□ -0.37
CD44-203ENST00000278386 ETV5P41161 510 aa12.74□□□□□ -0.37
CD44-203ENST00000278386 GPR1P46091 355 aa12.74□□□□□ -0.37
CD44-203ENST00000278386 PPM1FP49593 454 aaPredicted RBP12.74□□□□□ -0.37
CD44-203ENST00000278386 OR1D5P58170 312 aa12.74□□□□□ -0.37
CD44-203ENST00000278386 TPM4P67936 248 aa12.74□□□□□ -0.37
CD44-203ENST00000278386 SLC25A11Q02978 314 aaKnown RBP12.74□□□□□ -0.37
CD44-203ENST00000278386 TGIF1Q15583 401 aa12.74□□□□□ -0.37
CD44-203ENST00000278386 RALGPS1Q5JS13 557 aa12.74□□□□□ -0.37
CD44-203ENST00000278386 MANEAQ5SRI9 462 aa12.74□□□□□ -0.37
CD44-203ENST00000278386 TXNRD3NBQ6F5E7 133 aa12.74□□□□□ -0.37
CD44-203ENST00000278386 Q6ZVL8 140 aa12.74□□□□□ -0.37
CD44-203ENST00000278386 TMPRSS9Q7Z410 1059 aa12.74□□□□□ -0.37
CD44-203ENST00000278386 SLITRK4Q8IW52 837 aa12.74□□□□□ -0.37
CD44-203ENST00000278386 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP12.74□□□□□ -0.37
CD44-203ENST00000278386 GPBAR1Q8TDU6 330 aa12.74□□□□□ -0.37
CD44-203ENST00000278386 TEKT4Q8WW24 435 aa12.74□□□□□ -0.37
CD44-203ENST00000278386 SPOCK2Q92563 424 aa12.74□□□□□ -0.37
CD44-203ENST00000278386 TEX101Q9BY14 249 aa12.74□□□□□ -0.37
CD44-203ENST00000278386 FRMD8Q9BZ67 464 aaPredicted RBP12.74□□□□□ -0.37
CD44-203ENST00000278386 THAP2Q9H0W7 228 aa12.74□□□□□ -0.37
CD44-203ENST00000278386 SEMA6CQ9H3T2 930 aa12.74□□□□□ -0.37
CD44-203ENST00000278386 SPATS2LQ9NUQ6 558 aaKnown RBP12.74□□□□□ -0.37
CD44-203ENST00000278386 SEPT10Q9P0V9 454 aa12.74□□□□□ -0.37
CD44-203ENST00000278386 IP6K2Q9UHH9 426 aa12.74□□□□□ -0.37
CD44-203ENST00000278386 CD84Q9UIB8 345 aa12.74□□□□□ -0.37
CD44-203ENST00000278386 ZNF462Q96JM2 2506 aa12.74□□□□□ -0.37
CD44-203ENST00000278386 J3QKU1 62 aa12.73□□□□□ -0.37
CD44-203ENST00000278386 NVLO15381 856 aaKnown RBP12.73□□□□□ -0.37
CD44-203ENST00000278386 ECEL1O95672 775 aa12.73□□□□□ -0.37
CD44-203ENST00000278386 CPNE6O95741 557 aa12.73□□□□□ -0.37
CD44-203ENST00000278386 CEACAM5P06731 702 aa12.73□□□□□ -0.37
CD44-203ENST00000278386 ACTR1BP42025 376 aa12.73□□□□□ -0.37
CD44-203ENST00000278386 POLD2P49005 469 aa12.73□□□□□ -0.37
CD44-203ENST00000278386 EPHB1P54762 984 aa12.73□□□□□ -0.37
CD44-203ENST00000278386 ACTR1AP61163 376 aa12.73□□□□□ -0.37
CD44-203ENST00000278386 ZFP36L1Q07352 338 aaKnown RBP12.73□□□□□ -0.37
CD44-203ENST00000278386 MMRN1Q13201 1228 aa12.73□□□□□ -0.37
CD44-203ENST00000278386 SRSF6Q13247 344 aaKnown RBP12.73□□□□□ -0.37
CD44-203ENST00000278386 PEX6Q13608 980 aa12.73□□□□□ -0.37
CD44-203ENST00000278386 C16orf72Q14CZ0 275 aa12.73□□□□□ -0.37
CD44-203ENST00000278386 PTPRRQ15256 657 aa12.73□□□□□ -0.37
CD44-203ENST00000278386 LRRC66Q68CR7 880 aa12.73□□□□□ -0.37
CD44-203ENST00000278386 USP53Q70EK8 1073 aa12.73□□□□□ -0.37
CD44-203ENST00000278386 VASH2Q86V25 355 aa12.73□□□□□ -0.37
CD44-203ENST00000278386 PIM3Q86V86 326 aa12.73□□□□□ -0.37
CD44-203ENST00000278386 ZFAND4Q86XD8 727 aa12.73□□□□□ -0.37
CD44-203ENST00000278386 NRROSQ86YC3 692 aa12.73□□□□□ -0.37
CD44-203ENST00000278386 NDUFAF2Q8N183 169 aa12.73□□□□□ -0.37
CD44-203ENST00000278386 NIPA2Q8N8Q9 360 aa12.73□□□□□ -0.37
CD44-203ENST00000278386 RCBTB1Q8NDN9 531 aa12.73□□□□□ -0.37
CD44-203ENST00000278386 PTCD2Q8WV60 388 aaKnown RBP12.73□□□□□ -0.37
CD44-203ENST00000278386 PATE1Q8WXA2 126 aa12.73□□□□□ -0.37
CD44-203ENST00000278386 USP7Q93009 1102 aa12.73□□□□□ -0.37
CD44-203ENST00000278386 AP2M1Q96CW1 435 aa12.73□□□□□ -0.37
CD44-203ENST00000278386 SCRN2Q96FV2 425 aa12.73□□□□□ -0.37
CD44-203ENST00000278386 MED8Q96G25 268 aa12.73□□□□□ -0.37
CD44-203ENST00000278386 OR2M4Q96R27 311 aa12.73□□□□□ -0.37
CD44-203ENST00000278386 MCCC1Q96RQ3 725 aaPredicted RBP12.73□□□□□ -0.37
CD44-203ENST00000278386 SEMA3CQ99985 751 aa12.73□□□□□ -0.37
CD44-203ENST00000278386 NUDT22Q9BRQ3 303 aa12.73□□□□□ -0.37
CD44-203ENST00000278386 ARHGAP9Q9BRR9 750 aa12.73□□□□□ -0.37
CD44-203ENST00000278386 POLR1EQ9GZS1 481 aaKnown RBP12.73□□□□□ -0.37
CD44-203ENST00000278386 HAUS2Q9NVX0 235 aa12.73□□□□□ -0.37
CD44-203ENST00000278386 TRNAU1APQ9NX07 287 aaKnown RBP12.73□□□□□ -0.37
CD44-203ENST00000278386 FOXJ2Q9P0K8 574 aa12.73□□□□□ -0.37
CD44-203ENST00000278386 ACSL6Q9UKU0 697 aa12.73□□□□□ -0.37
CD44-203ENST00000278386 PCDHB11Q9Y5F2 797 aa12.73□□□□□ -0.37
CD44-203ENST00000278386 A0A0U1RQS6 177 aa12.72□□□□□ -0.37
CD44-203ENST00000278386 MAP3K6O95382 1288 aa12.72□□□□□ -0.37
CD44-203ENST00000278386 FGF1P05230 155 aa12.72□□□□□ -0.37
CD44-203ENST00000278386 IVLP07476 585 aa12.72□□□□□ -0.37
CD44-203ENST00000278386 ADCY8P40145 1251 aa12.72□□□□□ -0.37
CD44-203ENST00000278386 B4GALNT1Q00973 533 aa12.72□□□□□ -0.37
CD44-203ENST00000278386 CTBSQ01459 385 aa12.72□□□□□ -0.37
CD44-203ENST00000278386 NFKBIBQ15653 356 aa12.72□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms