RNA–Protein interactions for RNA: ENST00000263708.6

PTPN4-201, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPN4, Length 10,300 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-201ENST00000263708 RUNDC3AQ59EK9 446 aa11.38□□□□□ -0.59
PTPN4-201ENST00000263708 RNF43Q68DV7 783 aa11.38□□□□□ -0.59
PTPN4-201ENST00000263708 FBXO33Q7Z6M2 555 aa11.38□□□□□ -0.59
PTPN4-201ENST00000263708 TCAIMQ8N3R3 496 aa11.38□□□□□ -0.59
PTPN4-201ENST00000263708 TAS1R2Q8TE23 839 aa11.38□□□□□ -0.59
PTPN4-201ENST00000263708 ANXA2P2A6NMY6 339 aa11.38□□□□□ -0.59
PTPN4-201ENST00000263708 SNAP91O60641 907 aa11.38□□□□□ -0.59
PTPN4-201ENST00000263708 CSN2P05814 226 aa11.38□□□□□ -0.59
PTPN4-201ENST00000263708 ANXA2P07355 339 aaKnown RBP11.38□□□□□ -0.59
PTPN4-201ENST00000263708 ARP10275 920 aa11.38□□□□□ -0.59
PTPN4-201ENST00000263708 MCL1Q07820 350 aa11.38□□□□□ -0.59
PTPN4-201ENST00000263708 SMARCD3Q6STE5 483 aa11.38□□□□□ -0.59
PTPN4-201ENST00000263708 POLNQ7Z5Q5 900 aa11.38□□□□□ -0.59
PTPN4-201ENST00000263708 DEFB106AQ8N104 65 aa11.38□□□□□ -0.59
PTPN4-201ENST00000263708 C1orf216Q8TAB5 229 aa11.38□□□□□ -0.59
PTPN4-201ENST00000263708 CHIAQ9BZP6 476 aa11.38□□□□□ -0.59
PTPN4-201ENST00000263708 RNF19AQ9NV58 838 aa11.38□□□□□ -0.59
PTPN4-201ENST00000263708 HPF1Q9NWY4 346 aa11.38□□□□□ -0.59
PTPN4-201ENST00000263708 MID1O15344 667 aa11.38□□□□□ -0.59
PTPN4-201ENST00000263708 NUAK1O60285 661 aa11.38□□□□□ -0.59
PTPN4-201ENST00000263708 GRIA4P48058 902 aa11.38□□□□□ -0.59
PTPN4-201ENST00000263708 ZNF132P52740 706 aa11.38□□□□□ -0.59
PTPN4-201ENST00000263708 PRKG2Q13237 762 aa11.38□□□□□ -0.59
PTPN4-201ENST00000263708 COLEC12Q5KU26 742 aa11.38□□□□□ -0.59
PTPN4-201ENST00000263708 OR8H3Q8N146 312 aa11.38□□□□□ -0.59
PTPN4-201ENST00000263708 PTGR2Q8N8N7 351 aaPredicted RBP11.38□□□□□ -0.59
PTPN4-201ENST00000263708 DNAAF1Q8NEP3 725 aa11.38□□□□□ -0.59
PTPN4-201ENST00000263708 OVCA2Q8WZ82 227 aa11.38□□□□□ -0.59
PTPN4-201ENST00000263708 TAPBPLQ9BX59 468 aa11.38□□□□□ -0.59
PTPN4-201ENST00000263708 B3GNT4Q9C0J1 378 aa11.38□□□□□ -0.59
PTPN4-201ENST00000263708 MYH9P35579 1960 aaKnown RBP11.38□□□□□ -0.59
PTPN4-201ENST00000263708 MAZP56270 477 aaKnown RBP11.37□□□□□ -0.59
PTPN4-201ENST00000263708 LARS2Q15031 903 aaKnown RBP11.37□□□□□ -0.59
PTPN4-201ENST00000263708 CPSF6Q16630 551 aaKnown RBP eCLIP11.37□□□□□ -0.59
PTPN4-201ENST00000263708 SPATA6LQ8N4H0 392 aa11.37□□□□□ -0.59
PTPN4-201ENST00000263708 ATF4P18848 351 aaPredicted RBP11.37□□□□□ -0.59
PTPN4-201ENST00000263708 AHCYP23526 432 aa11.37□□□□□ -0.59
PTPN4-201ENST00000263708 NDUFA9Q16795 377 aa11.37□□□□□ -0.59
PTPN4-201ENST00000263708 ALG10Q5BKT4 473 aa11.37□□□□□ -0.59
PTPN4-201ENST00000263708 ATXN7L2Q5T6C5 722 aaPredicted RBP11.37□□□□□ -0.59
PTPN4-201ENST00000263708 OR52K1Q8NGK4 314 aa11.37□□□□□ -0.59
PTPN4-201ENST00000263708 TMEM27Q9HBJ8 222 aa11.37□□□□□ -0.59
PTPN4-201ENST00000263708 NUP50Q9UKX7 468 aa11.37□□□□□ -0.59
PTPN4-201ENST00000263708 FGBP02675 491 aa11.37□□□□□ -0.59
PTPN4-201ENST00000263708 CTSKP43235 329 aa11.37□□□□□ -0.59
PTPN4-201ENST00000263708 SEC13P55735 322 aa11.37□□□□□ -0.59
PTPN4-201ENST00000263708 CDK16Q00536 496 aa11.37□□□□□ -0.59
PTPN4-201ENST00000263708 C1QBPQ07021 282 aaKnown RBP11.37□□□□□ -0.59
PTPN4-201ENST00000263708 NAB1Q13506 487 aa11.37□□□□□ -0.59
PTPN4-201ENST00000263708 CCNYL2Q5T2Q4 361 aa11.37□□□□□ -0.59
PTPN4-201ENST00000263708 ADAM2Q99965 735 aa11.37□□□□□ -0.59
PTPN4-201ENST00000263708 ATPIF1Q9UII2 106 aa11.37□□□□□ -0.59
PTPN4-201ENST00000263708 SNX7Q9UNH6 387 aa11.37□□□□□ -0.59
PTPN4-201ENST00000263708 ACTL7BQ9Y614 415 aa11.37□□□□□ -0.59
PTPN4-201ENST00000263708 U3KQV3 271 aa11.37□□□□□ -0.59
PTPN4-201ENST00000263708 M0R036 132 aa11.37□□□□□ -0.59
PTPN4-201ENST00000263708 MSL3P1P0C860 447 aa11.37□□□□□ -0.59
PTPN4-201ENST00000263708 SLC26A2P50443 739 aa11.37□□□□□ -0.59
PTPN4-201ENST00000263708 DNAAF5Q86Y56 855 aa11.37□□□□□ -0.59
PTPN4-201ENST00000263708 SIRT2Q8IXJ6 389 aa11.37□□□□□ -0.59
PTPN4-201ENST00000263708 ACTRT1Q8TDG2 376 aa11.37□□□□□ -0.59
PTPN4-201ENST00000263708 ZNF558Q96NG5 402 aa11.37□□□□□ -0.59
PTPN4-201ENST00000263708 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP11.37□□□□□ -0.59
PTPN4-201ENST00000263708 SEPT4O43236 478 aa11.37□□□□□ -0.59
PTPN4-201ENST00000263708 ALDH5A1P51649 535 aaPredicted RBP11.37□□□□□ -0.59
PTPN4-201ENST00000263708 RAVER1Q8IY67 606 aaKnown RBP11.37□□□□□ -0.59
PTPN4-201ENST00000263708 ZNF366Q8N895 744 aa11.37□□□□□ -0.59
PTPN4-201ENST00000263708 FBXO15Q8NCQ5 510 aaPredicted RBP11.37□□□□□ -0.59
PTPN4-201ENST00000263708 FEM1CQ96JP0 617 aa11.37□□□□□ -0.59
PTPN4-201ENST00000263708 GMIPQ9P107 970 aa11.37□□□□□ -0.59
PTPN4-201ENST00000263708 MYH7P12883 1935 aa11.37□□□□□ -0.59
PTPN4-201ENST00000263708 DDX3XO00571 662 aaKnown RBP eCLIP11.37□□□□□ -0.595e-7■□□□□ 9
PTPN4-201ENST00000263708 OTCP00480 354 aa11.37□□□□□ -0.59
PTPN4-201ENST00000263708 PLGLB1Q02325 96 aa11.37□□□□□ -0.59
PTPN4-201ENST00000263708 SGCBQ16585 318 aa11.37□□□□□ -0.59
PTPN4-201ENST00000263708 ZFP69Q49AA0 526 aa11.37□□□□□ -0.59
PTPN4-201ENST00000263708 METTL7BQ6UX53 244 aa11.37□□□□□ -0.59
PTPN4-201ENST00000263708 NAXEQ8NCW5 288 aa11.37□□□□□ -0.59
PTPN4-201ENST00000263708 PIK3C3Q8NEB9 887 aa11.37□□□□□ -0.59
PTPN4-201ENST00000263708 TATDN2Q93075 761 aa11.37□□□□□ -0.59
PTPN4-201ENST00000263708 OR12D3Q9UGF7 316 aa11.37□□□□□ -0.59
PTPN4-201ENST00000263708 COLEC10Q9Y6Z7 277 aa11.37□□□□□ -0.59
PTPN4-201ENST00000263708 HECW2Q9P2P5 1572 aa11.37□□□□□ -0.59
PTPN4-201ENST00000263708 TRBV23OR9-2A0A075B6M9 112 aa11.37□□□□□ -0.59
PTPN4-201ENST00000263708 PIRTP0C851 137 aa11.37□□□□□ -0.59
PTPN4-201ENST00000263708 PTX3P26022 381 aaPredicted RBP11.37□□□□□ -0.59
PTPN4-201ENST00000263708 CDH4P55283 916 aa11.37□□□□□ -0.59
PTPN4-201ENST00000263708 PTPN20Q4JDL3 420 aa11.37□□□□□ -0.59
PTPN4-201ENST00000263708 CPTPQ5TA50 214 aa11.37□□□□□ -0.59
PTPN4-201ENST00000263708 STYK1Q6J9G0 422 aa11.37□□□□□ -0.59
PTPN4-201ENST00000263708 SLC27A1Q6PCB7 646 aa11.37□□□□□ -0.59
PTPN4-201ENST00000263708 LINGO1Q96FE5 620 aa11.37□□□□□ -0.59
PTPN4-201ENST00000263708 FAM240BA0A1B0GVZ2 78 aa11.37□□□□□ -0.59
PTPN4-201ENST00000263708 CDH3P22223 829 aa11.37□□□□□ -0.59
PTPN4-201ENST00000263708 PPP1R3FQ6ZSY5 799 aaPredicted RBP11.37□□□□□ -0.59
PTPN4-201ENST00000263708 MEMO1Q9Y316 297 aa11.37□□□□□ -0.59
PTPN4-201ENST00000263708 RHPN2P1A8MT19 583 aa11.36□□□□□ -0.59
PTPN4-201ENST00000263708 PAPSS2O95340 614 aaPredicted RBP11.36□□□□□ -0.59
PTPN4-201ENST00000263708 ADORA2AP29274 412 aa11.36□□□□□ -0.59
PTPN4-201ENST00000263708 CTSOP43234 321 aaPredicted RBP11.36□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms