RNA–Protein interactions for RNA: ENST00000253024.9

TRIM28-201, Transcript of tripartite motif containing 28, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRIM28, Length 2,960 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-201ENST00000253024 DHFR2Q86XF0 187 aa21.3■■□□□ 1
TRIM28-201ENST00000253024 IRGQQ8WZA9 623 aa21.3■■□□□ 1
TRIM28-201ENST00000253024 CRISPLD1Q9H336 500 aa21.3■■□□□ 1
TRIM28-201ENST00000253024 LDB2O43679 373 aa21.3■■□□□ 1
TRIM28-201ENST00000253024 KPNA6O60684 536 aa21.3■■□□□ 1
TRIM28-201ENST00000253024 RHOBTB1O94844 696 aa21.3■■□□□ 1
TRIM28-201ENST00000253024 ELNP15502 786 aa21.3■■□□□ 1
TRIM28-201ENST00000253024 EEF1DP29692 281 aaKnown RBP21.3■■□□□ 1
TRIM28-201ENST00000253024 RGRP47804 291 aa21.3■■□□□ 1
TRIM28-201ENST00000253024 LEPRP48357 1165 aaKnown RBP21.3■■□□□ 1
TRIM28-201ENST00000253024 IKBKEQ14164 716 aa21.3■■□□□ 1
TRIM28-201ENST00000253024 SQLEQ14534 574 aa21.3■■□□□ 1
TRIM28-201ENST00000253024 C18orf21Q32NC0 220 aaPredicted RBP21.3■■□□□ 1
TRIM28-201ENST00000253024 UGT3A1Q6NUS8 523 aa21.3■■□□□ 1
TRIM28-201ENST00000253024 PKMYT1Q99640 499 aa21.3■■□□□ 1
TRIM28-201ENST00000253024 SLC30A3Q99726 388 aa21.3■■□□□ 1
TRIM28-201ENST00000253024 ZBED2Q9BTP6 218 aa21.3■■□□□ 1
TRIM28-201ENST00000253024 VCX3AQ9NNX9 186 aa21.3■■□□□ 1
TRIM28-201ENST00000253024 TMX2-CTNND1H3BSU7 103 aa21.29■■□□□ 1
TRIM28-201ENST00000253024 NME4O00746 187 aa21.29■■□□□ 1
TRIM28-201ENST00000253024 RBP1P09455 135 aa21.29■■□□□ 1
TRIM28-201ENST00000253024 INHBCP55103 352 aa21.29■■□□□ 1
TRIM28-201ENST00000253024 ZFP1Q6P2D0 407 aa21.29■■□□□ 1
TRIM28-201ENST00000253024 SERPINB11Q96P15 392 aa21.29■■□□□ 1
TRIM28-201ENST00000253024 ZIC5Q96T25 663 aa21.29■■□□□ 1
TRIM28-201ENST00000253024 TUBB1Q9H4B7 451 aa21.29■■□□□ 1
TRIM28-201ENST00000253024 MEAF6Q9HAF1 191 aa21.29■■□□□ 1
TRIM28-201ENST00000253024 MARCH2Q9P0N8 246 aa21.29■■□□□ 1
TRIM28-201ENST00000253024 ASB1Q9Y576 335 aa21.29■■□□□ 1
TRIM28-201ENST00000253024 PCDHGC4Q9Y5F7 938 aa21.29■■□□□ 1
TRIM28-201ENST00000253024 RTN3O95197 1032 aaPredicted RBP21.29■■□□□ 1
TRIM28-201ENST00000253024 IRF1P10914 325 aa21.29■■□□□ 1
TRIM28-201ENST00000253024 CLCN5P51795 746 aa21.29■■□□□ 1
TRIM28-201ENST00000253024 KPNA2P52292 529 aaKnown RBP21.29■■□□□ 1
TRIM28-201ENST00000253024 KCNA10Q16322 511 aa21.29■■□□□ 1
TRIM28-201ENST00000253024 TBCELQ5QJ74 424 aa21.29■■□□□ 1
TRIM28-201ENST00000253024 LINGO4Q6UY18 593 aa21.29■■□□□ 1
TRIM28-201ENST00000253024 CBR4Q8N4T8 237 aa21.29■■□□□ 1
TRIM28-201ENST00000253024 AFAP1L2Q8N4X5 818 aa21.29■■□□□ 1
TRIM28-201ENST00000253024 ADCY4Q8NFM4 1077 aa21.29■■□□□ 1
TRIM28-201ENST00000253024 UBXN10Q96LJ8 280 aa21.29■■□□□ 1
TRIM28-201ENST00000253024 NSMCE3Q96MG7 304 aa21.29■■□□□ 1
TRIM28-201ENST00000253024 COMMD10Q9Y6G5 202 aa21.29■■□□□ 1
TRIM28-201ENST00000253024 RNF103-CHMP3A0A140T963 221 aa21.28■■□□□ 1
TRIM28-201ENST00000253024 NPEPPSL1A6NEC2 478 aa21.28■■□□□ 1
TRIM28-201ENST00000253024 A8MX80 341 aa21.28■■□□□ 1
TRIM28-201ENST00000253024 INPP4BO15327 924 aa21.28■■□□□ 1
TRIM28-201ENST00000253024 TNFAIP8O95379 198 aa21.28■■□□□ 1
TRIM28-201ENST00000253024 GGT5P36269 586 aa21.28■■□□□ 1
TRIM28-201ENST00000253024 RGS2P41220 211 aa21.28■■□□□ 1
TRIM28-201ENST00000253024 YAP1P46937 504 aaKnown RBP21.28■■□□□ 1
TRIM28-201ENST00000253024 RPS24P62847 133 aaKnown RBP21.28■■□□□ 1
TRIM28-201ENST00000253024 ACAP2Q15057 778 aa21.28■■□□□ 1
TRIM28-201ENST00000253024 FAM171A1Q5VUB5 890 aa21.28■■□□□ 1
TRIM28-201ENST00000253024 ZNF786Q8N393 782 aa21.28■■□□□ 1
TRIM28-201ENST00000253024 LZTR1Q8N653 840 aa21.28■■□□□ 1
TRIM28-201ENST00000253024 CYGBQ8WWM9 190 aa21.28■■□□□ 1
TRIM28-201ENST00000253024 TRIB2Q92519 343 aa21.28■■□□□ 1
TRIM28-201ENST00000253024 DCUN1D5Q9BTE7 237 aa21.28■■□□□ 1
TRIM28-201ENST00000253024 NACA2Q9H009 215 aa21.28■■□□□ 1
TRIM28-201ENST00000253024 VPS45Q9NRW7 570 aa21.28■■□□□ 1
TRIM28-201ENST00000253024 SPO11Q9Y5K1 396 aa21.28■■□□□ 1
TRIM28-201ENST00000253024 A0A0U1RQF3 1178 aa21.28■■□□□ 1
TRIM28-201ENST00000253024 ANGPT2O15123 496 aa21.28■■□□□ 1
TRIM28-201ENST00000253024 DENRO43583 198 aaKnown RBP21.28■■□□□ 1
TRIM28-201ENST00000253024 CLASP2O75122 1294 aaKnown RBP21.28■■□□□ 1
TRIM28-201ENST00000253024 IMPDH1P20839 514 aa21.28■■□□□ 1
TRIM28-201ENST00000253024 CALRP27797 417 aaKnown RBP21.28■■□□□ 1
TRIM28-201ENST00000253024 PIK3CGP48736 1102 aa21.28■■□□□ 1
TRIM28-201ENST00000253024 SEMG2Q02383 582 aa21.28■■□□□ 1
TRIM28-201ENST00000253024 CST9Q5W186 159 aa21.28■■□□□ 1
TRIM28-201ENST00000253024 CHSY3Q70JA7 882 aa21.28■■□□□ 1
TRIM28-201ENST00000253024 C16orf59Q7L2K0 433 aa21.28■■□□□ 1
TRIM28-201ENST00000253024 PAF1Q8N7H5 531 aa21.28■■□□□ 1
TRIM28-201ENST00000253024 NAT16Q8N8M0 369 aa21.28■■□□□ 1
TRIM28-201ENST00000253024 OR4K2Q8NGD2 314 aa21.28■■□□□ 1
TRIM28-201ENST00000253024 ARRDC2Q8TBH0 407 aa21.28■■□□□ 1
TRIM28-201ENST00000253024 POLR3BQ9NW08 1133 aaPredicted RBP21.28■■□□□ 1
TRIM28-201ENST00000253024 MAP10Q9P2G4 905 aa21.28■■□□□ 1
TRIM28-201ENST00000253024 AP3B1O00203 1094 aa21.27■■□□□ 1
TRIM28-201ENST00000253024 ATXN1LP0C7T5 689 aaKnown RBP21.27■■□□□ 1
TRIM28-201ENST00000253024 LARP4Q71RC2 724 aaKnown RBP eCLIP21.27■■□□□ 18e-10■■■□□ 18.9
TRIM28-201ENST00000253024 ZNF598Q86UK7 904 aaKnown RBP21.27■■□□□ 1
TRIM28-201ENST00000253024 APLFQ8IW19 511 aaPredicted RBP21.27■■□□□ 1
TRIM28-201ENST00000253024 LGI2Q8N0V4 545 aa21.27■■□□□ 1
TRIM28-201ENST00000253024 ARHGAP18Q8N392 663 aa21.27■■□□□ 1
TRIM28-201ENST00000253024 CALML6Q8TD86 181 aa21.27■■□□□ 1
TRIM28-201ENST00000253024 PRKD2Q9BZL6 878 aa21.27■■□□□ 1
TRIM28-201ENST00000253024 RNF112Q9ULX5 631 aa21.27■■□□□ 1
TRIM28-201ENST00000253024 CD1DP15813 335 aa21.27■■□□□ 1
TRIM28-201ENST00000253024 PPP1R8Q12972 351 aaKnown RBP21.27■■□□□ 1
TRIM28-201ENST00000253024 LSAMPQ13449 338 aa21.27■■□□□ 1
TRIM28-201ENST00000253024 FRG1Q14331 258 aaKnown RBP21.27■■□□□ 1
TRIM28-201ENST00000253024 CTXN3Q4LDR2 81 aa21.27■■□□□ 1
TRIM28-201ENST00000253024 SMYD5Q6GMV2 418 aa21.27■■□□□ 1
TRIM28-201ENST00000253024 SERINC5Q86VE9 423 aa21.27■■□□□ 1
TRIM28-201ENST00000253024 TICAM1Q8IUC6 712 aa21.27■■□□□ 1
TRIM28-201ENST00000253024 BCAP29Q9UHQ4 241 aa21.27■■□□□ 1
TRIM28-201ENST00000253024 IQCA1LA6NCM1 817 aa21.27■□□□□ 0.99
TRIM28-201ENST00000253024 BTN3A1O00481 513 aa21.27■□□□□ 0.99
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms