RNA–Protein interactions for RNA: ENSMUST00000035935.8

Ccdc40-201, Transcript of Coiled-coil domain-containing protein 40, mousemouse

APPRIS P2 TSL 1 (best) BASIC

Gene Ccdc40, Length 4,979 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc40-201ENSMUST00000035935 Tbc1d21Q9D9D3 336 aa10.3□□□□□ -0.76
Ccdc40-201ENSMUST00000035935 Rpl38Q9JJI8 70 aaKnown RBP10.3□□□□□ -0.76
Ccdc40-201ENSMUST00000035935 PolhQ9JJN0 694 aa10.3□□□□□ -0.76
Ccdc40-201ENSMUST00000035935 Nt5cQ9JM14 200 aa10.3□□□□□ -0.76
Ccdc40-201ENSMUST00000035935 Aqp5Q9WTY4 265 aa10.3□□□□□ -0.76
Ccdc40-201ENSMUST00000035935 Myh3P13541 1940 aa10.3□□□□□ -0.76
Ccdc40-201ENSMUST00000035935 Bclaf3A2AG58 752 aaKnown RBP10.29□□□□□ -0.76
Ccdc40-201ENSMUST00000035935 Gm5072A2AHM1 344 aa10.29□□□□□ -0.76
Ccdc40-201ENSMUST00000035935 Gm6133B2RY53 190 aa10.29□□□□□ -0.76
Ccdc40-201ENSMUST00000035935 Fam124aD3Z5V4 536 aa10.29□□□□□ -0.76
Ccdc40-201ENSMUST00000035935 Sema6aO35464 1031 aa10.29□□□□□ -0.76
Ccdc40-201ENSMUST00000035935 Cyp2b19O55071 492 aa10.29□□□□□ -0.76
Ccdc40-201ENSMUST00000035935 Pdlim7Q3TJD7 457 aa10.29□□□□□ -0.76
Ccdc40-201ENSMUST00000035935 Q3UK37 420 aa10.29□□□□□ -0.76
Ccdc40-201ENSMUST00000035935 C1orf109Q499E6 217 aa10.29□□□□□ -0.76
Ccdc40-201ENSMUST00000035935 Olfr798Q7TRH8 311 aa10.29□□□□□ -0.76
Ccdc40-201ENSMUST00000035935 Pcdh19Q80TF3 1145 aa10.29□□□□□ -0.76
Ccdc40-201ENSMUST00000035935 Gpr139Q80UC8 345 aa10.29□□□□□ -0.76
Ccdc40-201ENSMUST00000035935 MtdhQ80WJ7 579 aaKnown RBP10.29□□□□□ -0.76
Ccdc40-201ENSMUST00000035935 Trim50Q810I2 483 aa10.29□□□□□ -0.76
Ccdc40-201ENSMUST00000035935 Tyw1Q8BJM7 721 aa10.29□□□□□ -0.76
Ccdc40-201ENSMUST00000035935 Parp9Q8CAS9 866 aa10.29□□□□□ -0.76
Ccdc40-201ENSMUST00000035935 Nae1Q8VBW6 534 aa10.29□□□□□ -0.76
Ccdc40-201ENSMUST00000035935 Spock2Q9ER58 423 aa10.29□□□□□ -0.76
Ccdc40-201ENSMUST00000035935 Mpp5Q9JLB2 675 aa10.29□□□□□ -0.76
Ccdc40-201ENSMUST00000035935 Col18a1P39061 1774 aa10.29□□□□□ -0.76
Ccdc40-201ENSMUST00000035935 Trbv4A0A075B5I2 113 aa10.29□□□□□ -0.76
Ccdc40-201ENSMUST00000035935 Kif1cO35071 1100 aaKnown RBP10.29□□□□□ -0.76
Ccdc40-201ENSMUST00000035935 KlO35082 1014 aa10.29□□□□□ -0.76
Ccdc40-201ENSMUST00000035935 Ptch2O35595 1182 aa10.29□□□□□ -0.76
Ccdc40-201ENSMUST00000035935 S100a6P14069 89 aa10.29□□□□□ -0.76
Ccdc40-201ENSMUST00000035935 Cxcl9P18340 126 aa10.29□□□□□ -0.76
Ccdc40-201ENSMUST00000035935 Hsd3b5Q61694 373 aa10.29□□□□□ -0.76
Ccdc40-201ENSMUST00000035935 TsnQ62348 228 aaKnown RBP10.29□□□□□ -0.76
Ccdc40-201ENSMUST00000035935 Sdr16c5Q7TQA3 309 aa10.29□□□□□ -0.76
Ccdc40-201ENSMUST00000035935 Olfr169Q7TS53 313 aa10.29□□□□□ -0.76
Ccdc40-201ENSMUST00000035935 Snx32Q80ZJ7 404 aa10.29□□□□□ -0.76
Ccdc40-201ENSMUST00000035935 PstkQ8BP74 359 aa10.29□□□□□ -0.76
Ccdc40-201ENSMUST00000035935 Nat14Q8BVG8 206 aa10.29□□□□□ -0.76
Ccdc40-201ENSMUST00000035935 Rbm34Q8C5L7 375 aaKnown RBP10.29□□□□□ -0.76
Ccdc40-201ENSMUST00000035935 Pcdha6Q91Y14 946 aa10.29□□□□□ -0.76
Ccdc40-201ENSMUST00000035935 Tcaf2Q921K8 919 aa10.29□□□□□ -0.76
Ccdc40-201ENSMUST00000035935 Npm3Q9CPP0 175 aaKnown RBP10.29□□□□□ -0.76
Ccdc40-201ENSMUST00000035935 Spata1Q9D5R4 444 aa10.29□□□□□ -0.76
Ccdc40-201ENSMUST00000035935 Slc28a3Q9ERH8 703 aa10.29□□□□□ -0.76
Ccdc40-201ENSMUST00000035935 A0A1Y7VIU7 259 aa10.29□□□□□ -0.76
Ccdc40-201ENSMUST00000035935 Gm10406A6NAS4 205 aa10.29□□□□□ -0.76
Ccdc40-201ENSMUST00000035935 Gm3373A6NAS7 205 aa10.29□□□□□ -0.76
Ccdc40-201ENSMUST00000035935 Gm3252E9PUT9 216 aa10.29□□□□□ -0.76
Ccdc40-201ENSMUST00000035935 Gm3002E9PW72 216 aa10.29□□□□□ -0.76
Ccdc40-201ENSMUST00000035935 Gm3298E9PW80 205 aa10.29□□□□□ -0.76
Ccdc40-201ENSMUST00000035935 AunipE9Q6Z5 340 aa10.29□□□□□ -0.76
Ccdc40-201ENSMUST00000035935 Gm3468E9QAJ8 216 aa10.29□□□□□ -0.76
Ccdc40-201ENSMUST00000035935 Serpinb9cI7HJI5 387 aa10.29□□□□□ -0.76
Ccdc40-201ENSMUST00000035935 Gm3667K7N757 205 aa10.29□□□□□ -0.76
Ccdc40-201ENSMUST00000035935 Gna12P27600 379 aa10.29□□□□□ -0.76
Ccdc40-201ENSMUST00000035935 St14P56677 855 aa10.29□□□□□ -0.76
Ccdc40-201ENSMUST00000035935 NadkP58058 439 aa10.29□□□□□ -0.76
Ccdc40-201ENSMUST00000035935 Gm3558Q5FWC9 205 aa10.29□□□□□ -0.76
Ccdc40-201ENSMUST00000035935 Brsk1Q5RJI5 778 aa10.29□□□□□ -0.76
Ccdc40-201ENSMUST00000035935 Dlgap3Q6PFD5 977 aa10.29□□□□□ -0.76
Ccdc40-201ENSMUST00000035935 NfascQ810U3 1240 aa10.29□□□□□ -0.76
Ccdc40-201ENSMUST00000035935 Xylt1Q811B1 953 aa10.29□□□□□ -0.76
Ccdc40-201ENSMUST00000035935 Fbxl21Q8BFZ4 434 aa10.29□□□□□ -0.76
Ccdc40-201ENSMUST00000035935 Q8BL95 290 aa10.29□□□□□ -0.76
Ccdc40-201ENSMUST00000035935 Cgrrf1Q8BMJ7 332 aa10.29□□□□□ -0.76
Ccdc40-201ENSMUST00000035935 Fnbp1lQ8K012 605 aa10.29□□□□□ -0.76
Ccdc40-201ENSMUST00000035935 Ahi1Q8K3E5 1047 aa10.29□□□□□ -0.76
Ccdc40-201ENSMUST00000035935 MiosQ8VE19 875 aa10.29□□□□□ -0.76
Ccdc40-201ENSMUST00000035935 Lama4P97927 1816 aa10.29□□□□□ -0.76
Ccdc40-201ENSMUST00000035935 Spin2dB1B0R2 236 aa10.29□□□□□ -0.76
Ccdc40-201ENSMUST00000035935 Vmn2r2L7N2E9 908 aa10.29□□□□□ -0.76
Ccdc40-201ENSMUST00000035935 Aldh1a7O35945 501 aa10.29□□□□□ -0.76
Ccdc40-201ENSMUST00000035935 FlgP11088 336 aa10.29□□□□□ -0.76
Ccdc40-201ENSMUST00000035935 Sept4P28661 478 aa10.29□□□□□ -0.76
Ccdc40-201ENSMUST00000035935 Gm4951Q3UED7 406 aa10.29□□□□□ -0.76
Ccdc40-201ENSMUST00000035935 Ubtfl1Q3USZ2 394 aa10.29□□□□□ -0.76
Ccdc40-201ENSMUST00000035935 Ampd1Q3V1D3 745 aa10.29□□□□□ -0.76
Ccdc40-201ENSMUST00000035935 Grik1Q60934 836 aa10.29□□□□□ -0.76
Ccdc40-201ENSMUST00000035935 Cyp2c54Q6XVG2 490 aa10.29□□□□□ -0.76
Ccdc40-201ENSMUST00000035935 Cspg5Q71M36 566 aa10.29□□□□□ -0.76
Ccdc40-201ENSMUST00000035935 Tex13c3Q810P0 219 aa10.29□□□□□ -0.76
Ccdc40-201ENSMUST00000035935 Svs2Q8BS30 375 aa10.29□□□□□ -0.76
Ccdc40-201ENSMUST00000035935 Gpr21Q8BX79 349 aa10.29□□□□□ -0.76
Ccdc40-201ENSMUST00000035935 Swi5Q8K3D3 89 aa10.29□□□□□ -0.76
Ccdc40-201ENSMUST00000035935 Olfr474Q8VFC9 310 aa10.29□□□□□ -0.76
Ccdc40-201ENSMUST00000035935 Itm2cQ91VK4 269 aa10.29□□□□□ -0.76
Ccdc40-201ENSMUST00000035935 Slc35a5Q921R7 437 aa10.29□□□□□ -0.76
Ccdc40-201ENSMUST00000035935 Ergic3Q9CQE7 383 aa10.29□□□□□ -0.76
Ccdc40-201ENSMUST00000035935 Lsm12Q9D0R8 195 aa10.29□□□□□ -0.76
Ccdc40-201ENSMUST00000035935 Exoc2Q9D4H1 924 aa10.29□□□□□ -0.76
Ccdc40-201ENSMUST00000035935 4930513O06RikQ9D549 161 aa10.29□□□□□ -0.76
Ccdc40-201ENSMUST00000035935 Efhd2Q9D8Y0 240 aaKnown RBP10.29□□□□□ -0.76
Ccdc40-201ENSMUST00000035935 Myh7Q91Z83 1935 aa10.29□□□□□ -0.76
Ccdc40-201ENSMUST00000035935 Vmn1r3A2AMT7 306 aa10.28□□□□□ -0.76
Ccdc40-201ENSMUST00000035935 Mup18A2BIM8 181 aa10.28□□□□□ -0.76
Ccdc40-201ENSMUST00000035935 Gm17175E9Q528 179 aa10.28□□□□□ -0.76
Ccdc40-201ENSMUST00000035935 H2-Q1O19441 368 aa10.28□□□□□ -0.76
Ccdc40-201ENSMUST00000035935 Per3O70361 1113 aa10.28□□□□□ -0.76
Ccdc40-201ENSMUST00000035935 Fpr-rs3O88537 343 aa10.28□□□□□ -0.76
Retrieved 100 of 22,080 RNA–protein pairs in 35.4 ms