Protein–RNA interactions for Protein: Q80TF3

Pcdh19, Protocadherin-19, mousemouse

Predictions only

Length 1,145 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Pcdh19Q80TF3 Gm25239-201ENSMUST00000174915 86 ntBASIC37.56■■■■□ 3.6
Pcdh19Q80TF3 Smc2os-201ENSMUST00000141473 626 ntTSL 1 (best) BASIC34.68■■■■□ 3.14
Pcdh19Q80TF3 1810037I17Rik-201ENSMUST00000106429 1160 ntAPPRIS P1 TSL 1 (best) BASIC34.27■■■■□ 3.08
Pcdh19Q80TF3 Gm15042-201ENSMUST00000120212 883 ntBASIC32.96■■■□□ 2.87
Pcdh19Q80TF3 Necab2-201ENSMUST00000098363 1976 ntAPPRIS P1 TSL 1 (best) BASIC32.55■■■□□ 2.8
Pcdh19Q80TF3 Gm24109-201ENSMUST00000175489 103 ntBASIC32.46■■■□□ 2.79
Pcdh19Q80TF3 Gm15045-201ENSMUST00000117359 883 ntBASIC32.17■■■□□ 2.74
Pcdh19Q80TF3 Khdrbs3-201ENSMUST00000022954 1887 ntAPPRIS P1 TSL 1 (best) BASIC32■■■□□ 2.71
Pcdh19Q80TF3 Kcnmb4-201ENSMUST00000068233 1367 ntAPPRIS P1 TSL 1 (best) BASIC32■■■□□ 2.71
Pcdh19Q80TF3 Gatad1-202ENSMUST00000119783 1278 ntAPPRIS ALT2 TSL 1 (best) BASIC31.7■■■□□ 2.67
Pcdh19Q80TF3 Kdm2a-208ENSMUST00000176483 1128 ntTSL 1 (best) BASIC31.67■■■□□ 2.66
Pcdh19Q80TF3 Cacng8-202ENSMUST00000182222 1897 ntAPPRIS P1 TSL 5 BASIC31.54■■■□□ 2.64
Pcdh19Q80TF3 Gm23366-201ENSMUST00000175022 89 ntBASIC31.45■■■□□ 2.63
Pcdh19Q80TF3 Arhgdig-201ENSMUST00000025019 1032 ntAPPRIS P1 TSL 1 (best) BASIC31.24■■■□□ 2.59
Pcdh19Q80TF3 Plekho1-201ENSMUST00000015889 1931 ntAPPRIS P1 TSL 1 (best) BASIC30.83■■■□□ 2.53
Pcdh19Q80TF3 Cd63-201ENSMUST00000026407 1063 ntAPPRIS P1 TSL 1 (best) BASIC30.71■■■□□ 2.51
Pcdh19Q80TF3 B330016D10Rik-201ENSMUST00000049927 1701 ntBASIC30.59■■■□□ 2.49
Pcdh19Q80TF3 Ankrd40-202ENSMUST00000051221 1477 ntAPPRIS ALT2 TSL 1 (best) BASIC30.48■■■□□ 2.47
Pcdh19Q80TF3 Tusc1-201ENSMUST00000066774 1374 ntAPPRIS P1 BASIC30.41■■■□□ 2.46
Pcdh19Q80TF3 Rhno1-201ENSMUST00000057421 1584 ntAPPRIS P1 TSL 1 (best) BASIC30.32■■■□□ 2.44
Pcdh19Q80TF3 AC153911.1-202ENSMUST00000218534 1034 ntBASIC30.24■■■□□ 2.43
Pcdh19Q80TF3 Trnp1-202ENSMUST00000125541 1654 ntAPPRIS P1 TSL 1 (best) BASIC30.17■■■□□ 2.42
Pcdh19Q80TF3 Ctdnep1-201ENSMUST00000108593 1627 ntAPPRIS P1 TSL 1 (best) BASIC30.12■■■□□ 2.41
Pcdh19Q80TF3 Ybx2-201ENSMUST00000018698 1673 ntAPPRIS P3 TSL 1 (best) BASIC30.1■■■□□ 2.41
Pcdh19Q80TF3 Hoxd8-202ENSMUST00000074721 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC30.05■■■□□ 2.4
Pcdh19Q80TF3 Gm20732-201ENSMUST00000175699 686 ntTSL 3 BASIC30.04■■■□□ 2.4
Pcdh19Q80TF3 Hnrnpd-201ENSMUST00000019128 2000 ntAPPRIS ALT2 TSL 1 (best) BASIC30.01■■■□□ 2.4
Pcdh19Q80TF3 Fgf2-204ENSMUST00000138563 1240 ntAPPRIS P2 TSL 5 BASIC29.97■■■□□ 2.39
Pcdh19Q80TF3 Psd-208ENSMUST00000224556 2034 ntBASIC29.95■■■□□ 2.38
Pcdh19Q80TF3 4930537H20Rik-201ENSMUST00000200437 1683 ntBASIC29.92■■■□□ 2.38
Pcdh19Q80TF3 Fgf18-201ENSMUST00000020507 1086 ntAPPRIS P1 TSL 1 (best) BASIC29.76■■■□□ 2.35
Pcdh19Q80TF3 Rexo2-201ENSMUST00000034524 1077 ntAPPRIS P1 TSL 1 (best) BASIC29.76■■■□□ 2.35
Pcdh19Q80TF3 Pabpn1-207ENSMUST00000150975 1775 ntAPPRIS ALT2 TSL 1 (best) BASIC29.76■■■□□ 2.35
Pcdh19Q80TF3 Pkig-201ENSMUST00000064703 1036 ntAPPRIS P1 TSL 1 (best) BASIC29.7■■■□□ 2.35
Pcdh19Q80TF3 Drap1-203ENSMUST00000113674 939 ntTSL 2 BASIC29.67■■■□□ 2.34
Pcdh19Q80TF3 Gm25238-201ENSMUST00000174914 89 ntBASIC29.56■■■□□ 2.32
Pcdh19Q80TF3 Ppp2r5c-206ENSMUST00000222276 1802 ntTSL 2 BASIC29.45■■■□□ 2.3
Pcdh19Q80TF3 Asmt-201ENSMUST00000178693 1191 ntAPPRIS P1 TSL 1 (best) BASIC29.43■■■□□ 2.3
Pcdh19Q80TF3 Tmem165-201ENSMUST00000031144 1897 ntAPPRIS P1 TSL 1 (best) BASIC29.29■■■□□ 2.28
Pcdh19Q80TF3 Mbd2-201ENSMUST00000074058 1953 ntAPPRIS P1 TSL 1 (best) BASIC29.14■■■□□ 2.26
Pcdh19Q80TF3 Pabpn1-202ENSMUST00000116476 1761 ntAPPRIS ALT2 TSL 1 (best) BASIC29.13■■■□□ 2.25
Pcdh19Q80TF3 Drap1-201ENSMUST00000025853 992 ntAPPRIS P1 TSL 1 (best) BASIC29.12■■■□□ 2.25
Pcdh19Q80TF3 Syce2-204ENSMUST00000170296 929 ntAPPRIS ALT2 TSL 2 BASIC29.11■■■□□ 2.25
Pcdh19Q80TF3 Rnf149-204ENSMUST00000195705 389 ntTSL 3 BASIC29■■■□□ 2.23
Pcdh19Q80TF3 Rrnad1-207ENSMUST00000160143 1568 ntTSL 5 BASIC28.96■■■□□ 2.23
Pcdh19Q80TF3 Gm27325-201ENSMUST00000175467 74 ntBASIC28.87■■■□□ 2.21
Pcdh19Q80TF3 Crk-202ENSMUST00000093115 965 ntTSL 1 (best) BASIC28.87■■■□□ 2.21
Pcdh19Q80TF3 Rnf126-201ENSMUST00000047203 1639 ntAPPRIS P1 TSL 1 (best) BASIC28.85■■■□□ 2.21
Pcdh19Q80TF3 Crk-204ENSMUST00000108426 671 ntTSL 3 BASIC28.77■■■□□ 2.2
Pcdh19Q80TF3 Six2-202ENSMUST00000163568 2119 ntAPPRIS P1 TSL 1 (best) BASIC28.76■■■□□ 2.2
Pcdh19Q80TF3 Tprgl-202ENSMUST00000105639 642 ntTSL 5 BASIC28.67■■■□□ 2.18
Pcdh19Q80TF3 Tmem240-201ENSMUST00000127188 1308 ntAPPRIS P1 TSL 2 BASIC28.67■■■□□ 2.18
Pcdh19Q80TF3 Cyhr1-203ENSMUST00000176274 1854 ntAPPRIS ALT2 TSL 1 (best) BASIC28.65■■■□□ 2.18
Pcdh19Q80TF3 Six2-201ENSMUST00000024947 1812 ntAPPRIS P1 TSL 1 (best) BASIC28.64■■■□□ 2.18
Pcdh19Q80TF3 Sh3glb2-204ENSMUST00000113621 1851 ntTSL 5 BASIC28.59■■■□□ 2.17
Pcdh19Q80TF3 Sh3glb2-214ENSMUST00000163668 1733 ntTSL 5 BASIC28.55■■■□□ 2.16
Pcdh19Q80TF3 Cacng8-201ENSMUST00000092351 1380 ntAPPRIS P1 TSL 1 (best) BASIC28.49■■■□□ 2.15
Pcdh19Q80TF3 Gm25262-201ENSMUST00000174934 133 ntBASIC28.38■■■□□ 2.13
Pcdh19Q80TF3 Nfic-204ENSMUST00000117966 1655 ntTSL 1 (best) BASIC28.35■■■□□ 2.13
Pcdh19Q80TF3 Rab21-202ENSMUST00000218831 843 ntBASIC28.33■■■□□ 2.13
Pcdh19Q80TF3 Wtip-201ENSMUST00000038537 1962 ntAPPRIS P1 TSL 1 (best) BASIC28.32■■■□□ 2.12
Pcdh19Q80TF3 Ppp2cb-201ENSMUST00000009774 1469 ntAPPRIS P1 TSL 1 (best) BASIC28.3■■■□□ 2.12
Pcdh19Q80TF3 Nrgn-201ENSMUST00000065668 1453 ntAPPRIS P1 TSL 1 (best) BASIC28.28■■■□□ 2.12
Pcdh19Q80TF3 Gdf7-201ENSMUST00000037313 1423 ntAPPRIS P2 TSL 5 BASIC28.27■■■□□ 2.12
Pcdh19Q80TF3 Glrx5-203ENSMUST00000223244 793 ntTSL 5 BASIC28.23■■■□□ 2.11
Pcdh19Q80TF3 Poldip2-201ENSMUST00000001127 2054 ntAPPRIS P1 TSL 1 (best) BASIC28.22■■■□□ 2.11
Pcdh19Q80TF3 Pkdcc-204ENSMUST00000170794 2446 ntAPPRIS P1 TSL 1 (best) BASIC28.19■■■□□ 2.1
Pcdh19Q80TF3 Mta3-202ENSMUST00000112349 1728 ntAPPRIS ALT2 TSL 1 (best) BASIC28.18■■■□□ 2.1
Pcdh19Q80TF3 Nfix-202ENSMUST00000099070 1728 ntAPPRIS P1 TSL 1 (best) BASIC28.17■■■□□ 2.1
Pcdh19Q80TF3 Atoh7-201ENSMUST00000044059 1629 ntAPPRIS P1 BASIC28.16■■■□□ 2.1
Pcdh19Q80TF3 Gm10524-201ENSMUST00000181931 1893 ntBASIC28.16■■■□□ 2.1
Pcdh19Q80TF3 Hoxa4-201ENSMUST00000101395 1594 ntAPPRIS P1 TSL 1 (best) BASIC28.15■■■□□ 2.1
Pcdh19Q80TF3 Fam220a-203ENSMUST00000118121 919 ntTSL 1 (best) BASIC28.09■■■□□ 2.09
Pcdh19Q80TF3 Tmed7-201ENSMUST00000036030 1436 ntTSL 5 BASIC28.07■■■□□ 2.08
Pcdh19Q80TF3 Vps37d-201ENSMUST00000067935 1544 ntAPPRIS P1 TSL 1 (best) BASIC28.02■■■□□ 2.08
Pcdh19Q80TF3 Sh3glb2-201ENSMUST00000028214 1810 ntAPPRIS P1 TSL 1 (best) BASIC28.02■■■□□ 2.08
Pcdh19Q80TF3 Zic2-201ENSMUST00000075888 2440 ntAPPRIS P1 TSL 1 (best) BASIC28.01■■■□□ 2.07
Pcdh19Q80TF3 Trabd-203ENSMUST00000165690 1941 ntAPPRIS P2 TSL 1 (best) BASIC28.01■■■□□ 2.07
Pcdh19Q80TF3 Cdk9-201ENSMUST00000009699 1733 ntAPPRIS P1 TSL 1 (best) BASIC27.98■■■□□ 2.07
Pcdh19Q80TF3 Rab12-201ENSMUST00000070538 2057 ntAPPRIS ALT2 TSL 1 (best) BASIC27.97■■■□□ 2.07
Pcdh19Q80TF3 B430219N15Rik-202ENSMUST00000180853 1105 ntBASIC27.91■■■□□ 2.06
Pcdh19Q80TF3 Gpr137c-202ENSMUST00000147957 1395 ntAPPRIS ALT2 TSL 1 (best) BASIC27.89■■■□□ 2.06
Pcdh19Q80TF3 Fam122a-201ENSMUST00000099556 855 ntAPPRIS P1 BASIC27.89■■■□□ 2.06
Pcdh19Q80TF3 Gsx2-202ENSMUST00000160104 1182 ntTSL 1 (best) BASIC27.86■■■□□ 2.05
Pcdh19Q80TF3 CT025624.2-201ENSMUST00000223609 1909 ntBASIC27.84■■■□□ 2.05
Pcdh19Q80TF3 BC030336-205ENSMUST00000208454 813 ntTSL 2 BASIC27.82■■■□□ 2.04
Pcdh19Q80TF3 Crebl2-202ENSMUST00000111937 612 ntTSL 3 BASIC27.81■■■□□ 2.04
Pcdh19Q80TF3 Nkx3-2-201ENSMUST00000060820 1718 ntAPPRIS P1 TSL 1 (best) BASIC27.73■■■□□ 2.03
Pcdh19Q80TF3 Gm42596-201ENSMUST00000196305 1958 ntBASIC27.71■■■□□ 2.03
Pcdh19Q80TF3 Kctd9-204ENSMUST00000150768 1302 ntAPPRIS P1 TSL 5 BASIC27.69■■■□□ 2.02
Pcdh19Q80TF3 Agap3-206ENSMUST00000212381 1191 ntTSL 5 BASIC27.69■■■□□ 2.02
Pcdh19Q80TF3 B3gat3-201ENSMUST00000096243 1601 ntAPPRIS P1 TSL 1 (best) BASIC27.69■■■□□ 2.02
Pcdh19Q80TF3 Stard10-201ENSMUST00000032927 1400 ntAPPRIS P1 TSL 1 (best) BASIC27.65■■■□□ 2.02
Pcdh19Q80TF3 Gm26115-201ENSMUST00000175605 87 ntBASIC27.63■■■□□ 2.01
Pcdh19Q80TF3 Pabpn1-201ENSMUST00000022808 1030 ntAPPRIS P2 TSL 1 (best) BASIC27.63■■■□□ 2.01
Pcdh19Q80TF3 Ino80b-202ENSMUST00000113935 1503 ntAPPRIS ALT2 TSL 1 (best) BASIC27.62■■■□□ 2.01
Pcdh19Q80TF3 Gm12339-201ENSMUST00000127424 728 ntTSL 3 BASIC27.61■■■□□ 2.01
Pcdh19Q80TF3 Bcl7c-201ENSMUST00000061468 1132 ntAPPRIS P1 TSL 1 (best) BASIC27.6■■■□□ 2.01
Pcdh19Q80TF3 Svbp-202ENSMUST00000097908 832 ntTSL 2 BASIC27.54■■■□□ 2
Pcdh19Q80TF3 Rab12-205ENSMUST00000167962 2010 ntAPPRIS P2 TSL 1 (best) BASIC27.52■■■□□ 2
Retrieved 100 of 76,532 protein–RNA pairs in 13.6 ms