RNA–Protein interactions for RNA: ENST00000625244.2

SNX1-214, Transcript of sorting nexin 1, humanhuman

TSL 5 BASIC

Gene SNX1, Length 324 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-214ENST00000625244 OLFML1Q6UWY5 402 aa13.89□□□□□ -0.19
SNX1-214ENST00000625244 SLC47A2Q86VL8 602 aa13.89□□□□□ -0.19
SNX1-214ENST00000625244 PTCD2Q8WV60 388 aaKnown RBP13.89□□□□□ -0.19
SNX1-214ENST00000625244 ZNF606Q8WXB4 792 aa13.89□□□□□ -0.19
SNX1-214ENST00000625244 AHCYL2Q96HN2 611 aaKnown RBP13.89□□□□□ -0.19
SNX1-214ENST00000625244 SPATA32Q96LK8 384 aa13.89□□□□□ -0.19
SNX1-214ENST00000625244 KREMEN1Q96MU8 473 aa13.89□□□□□ -0.19
SNX1-214ENST00000625244 GDAP1L1Q96MZ0 367 aa13.89□□□□□ -0.19
SNX1-214ENST00000625244 NPY6RQ99463 290 aa13.89□□□□□ -0.19
SNX1-214ENST00000625244 ZYG11BQ9C0D3 744 aa13.89□□□□□ -0.19
SNX1-214ENST00000625244 TTYH3Q9C0H2 523 aa13.89□□□□□ -0.19
SNX1-214ENST00000625244 ZDHHC9Q9Y397 364 aa13.89□□□□□ -0.19
SNX1-214ENST00000625244 MFHAS1Q9Y4C4 1052 aa13.89□□□□□ -0.19
SNX1-214ENST00000625244 LRCH4O75427 683 aa13.88□□□□□ -0.19
SNX1-214ENST00000625244 RECQL5O94762 991 aaPredicted RBP13.88□□□□□ -0.19
SNX1-214ENST00000625244 TMCC1O94876 653 aa13.88□□□□□ -0.19
SNX1-214ENST00000625244 RECKO95980 971 aa13.88□□□□□ -0.19
SNX1-214ENST00000625244 NFKBIAP25963 317 aa13.88□□□□□ -0.19
SNX1-214ENST00000625244 VARSP26640 1264 aaKnown RBP13.88□□□□□ -0.19
SNX1-214ENST00000625244 MMP12P39900 470 aa13.88□□□□□ -0.19
SNX1-214ENST00000625244 GNPDA1P46926 289 aa13.88□□□□□ -0.19
SNX1-214ENST00000625244 FMO5P49326 533 aa13.88□□□□□ -0.19
SNX1-214ENST00000625244 GEMIN4P57678 1058 aaKnown RBP13.88□□□□□ -0.19
SNX1-214ENST00000625244 CTBSQ01459 385 aa13.88□□□□□ -0.19
SNX1-214ENST00000625244 RAD51Q06609 339 aa13.88□□□□□ -0.19
SNX1-214ENST00000625244 SLC6A19Q695T7 634 aa13.88□□□□□ -0.19
SNX1-214ENST00000625244 WDR74Q6RFH5 385 aaPredicted RBP13.88□□□□□ -0.19
SNX1-214ENST00000625244 C11orf57Q6ZUT1 292 aaPredicted RBP13.88□□□□□ -0.19
SNX1-214ENST00000625244 LYSMD3Q7Z3D4 306 aa13.88□□□□□ -0.19
SNX1-214ENST00000625244 RBMXL3Q8N7X1 1067 aaKnown RBP13.88□□□□□ -0.19
SNX1-214ENST00000625244 OR10G6Q8NH81 332 aa13.88□□□□□ -0.19
SNX1-214ENST00000625244 LMO3Q8TAP4 145 aa13.88□□□□□ -0.19
SNX1-214ENST00000625244 SNRNP40Q96DI7 357 aaKnown RBP13.88□□□□□ -0.19
SNX1-214ENST00000625244 WDR26Q9H7D7 661 aa13.88□□□□□ -0.19
SNX1-214ENST00000625244 ASF1BQ9NVP2 202 aa13.88□□□□□ -0.19
SNX1-214ENST00000625244 TRNAU1APQ9NX07 287 aaKnown RBP13.88□□□□□ -0.19
SNX1-214ENST00000625244 SIDT1Q9NXL6 827 aaKnown RBP13.88□□□□□ -0.19
SNX1-214ENST00000625244 PHTF1Q9UMS5 762 aa13.88□□□□□ -0.19
SNX1-214ENST00000625244 CNTN6Q9UQ52 1028 aa13.88□□□□□ -0.19
SNX1-214ENST00000625244 PCDHGA6Q9Y5G7 932 aa13.88□□□□□ -0.19
SNX1-214ENST00000625244 TRBV23OR9-2A0A075B6M9 112 aa13.87□□□□□ -0.19
SNX1-214ENST00000625244 A0A1B0GTL3 188 aa13.87□□□□□ -0.19
SNX1-214ENST00000625244 TSPAN11A1L157 253 aa13.87□□□□□ -0.19
SNX1-214ENST00000625244 ANKUB1A6NFN9 424 aa13.87□□□□□ -0.19
SNX1-214ENST00000625244 SLC16A3O15427 465 aaKnown RBP13.87□□□□□ -0.19
SNX1-214ENST00000625244 TEX33O43247 280 aa13.87□□□□□ -0.19
SNX1-214ENST00000625244 THAP12O43422 761 aa13.87□□□□□ -0.19
SNX1-214ENST00000625244 MED7O43513 233 aa13.87□□□□□ -0.19
SNX1-214ENST00000625244 IGSF6O95976 241 aa13.87□□□□□ -0.19
SNX1-214ENST00000625244 MYL1P05976 194 aa13.87□□□□□ -0.19
SNX1-214ENST00000625244 CEACAM5P06731 702 aa13.87□□□□□ -0.19
SNX1-214ENST00000625244 KRT5P13647 590 aa13.87□□□□□ -0.19
SNX1-214ENST00000625244 GM2AP17900 193 aa13.87□□□□□ -0.19
SNX1-214ENST00000625244 CASP14P31944 242 aa13.87□□□□□ -0.19
SNX1-214ENST00000625244 SULT1E1P49888 294 aa13.87□□□□□ -0.19
SNX1-214ENST00000625244 DNASE1L3Q13609 305 aa13.87□□□□□ -0.19
SNX1-214ENST00000625244 ERAP2Q6P179 960 aa13.87□□□□□ -0.19
SNX1-214ENST00000625244 ZSWIM9Q86XI8 627 aa13.87□□□□□ -0.19
SNX1-214ENST00000625244 SMYD4Q8IYR2 804 aaPredicted RBP13.87□□□□□ -0.19
SNX1-214ENST00000625244 NCSTNQ92542 709 aa13.87□□□□□ -0.19
SNX1-214ENST00000625244 PNPLA2Q96AD5 504 aa13.87□□□□□ -0.19
SNX1-214ENST00000625244 STAMBPL1Q96FJ0 436 aa13.87□□□□□ -0.19
SNX1-214ENST00000625244 LURAP1Q96LR2 239 aa13.87□□□□□ -0.19
SNX1-214ENST00000625244 SLC38A3Q99624 504 aa13.87□□□□□ -0.19
SNX1-214ENST00000625244 KLHL3Q9UH77 587 aa13.87□□□□□ -0.19
SNX1-214ENST00000625244 SUFUQ9UMX1 484 aa13.87□□□□□ -0.19
SNX1-214ENST00000625244 ZNF451Q9Y4E5 1061 aa13.87□□□□□ -0.19
SNX1-214ENST00000625244 PLEKHM1Q9Y4G2 1056 aa13.87□□□□□ -0.19
SNX1-214ENST00000625244 ARGFXA6NJG6 315 aa13.86□□□□□ -0.19
SNX1-214ENST00000625244 BUB1BO60566 1050 aaPredicted RBP13.86□□□□□ -0.19
SNX1-214ENST00000625244 DPM1O60762 260 aa13.86□□□□□ -0.19
SNX1-214ENST00000625244 MAP3K6O95382 1288 aa13.86□□□□□ -0.19
SNX1-214ENST00000625244 ERBB2P04626 1255 aa13.86□□□□□ -0.19
SNX1-214ENST00000625244 ETFBP38117 255 aa13.86□□□□□ -0.19
SNX1-214ENST00000625244 GCNT1Q02742 428 aa13.86□□□□□ -0.19
SNX1-214ENST00000625244 DEUP1Q05D60 604 aa13.86□□□□□ -0.19
SNX1-214ENST00000625244 FOXM1Q08050 763 aa13.86□□□□□ -0.19
SNX1-214ENST00000625244 RALGDSQ12967 914 aa13.86□□□□□ -0.19
SNX1-214ENST00000625244 CHRNA6Q15825 494 aa13.86□□□□□ -0.19
SNX1-214ENST00000625244 PNCKQ6P2M8 343 aa13.86□□□□□ -0.19
SNX1-214ENST00000625244 SLC26A9Q7LBE3 791 aa13.86□□□□□ -0.19
SNX1-214ENST00000625244 HCAR2Q8TDS4 363 aa13.86□□□□□ -0.19
SNX1-214ENST00000625244 NT5C3BQ969T7 300 aa13.86□□□□□ -0.19
SNX1-214ENST00000625244 CCDC47Q96A33 483 aaKnown RBP13.86□□□□□ -0.19
SNX1-214ENST00000625244 PGAP3Q96FM1 320 aaPredicted RBP13.86□□□□□ -0.19
SNX1-214ENST00000625244 RUFY1Q96T51 708 aa13.86□□□□□ -0.19
SNX1-214ENST00000625244 TBCBQ99426 244 aa13.86□□□□□ -0.19
SNX1-214ENST00000625244 ING2Q9H160 280 aa13.86□□□□□ -0.19
SNX1-214ENST00000625244 ACTL8Q9H568 366 aa13.86□□□□□ -0.19
SNX1-214ENST00000625244 SUV39H2Q9H5I1 410 aa13.86□□□□□ -0.19
SNX1-214ENST00000625244 ACSS2Q9NR19 701 aa13.86□□□□□ -0.19
SNX1-214ENST00000625244 PPARGC1AQ9UBK2 798 aaKnown RBP13.86□□□□□ -0.19
SNX1-214ENST00000625244 ARMCX3Q9UH62 379 aaPredicted RBP13.86□□□□□ -0.19
SNX1-214ENST00000625244 DNAI1Q9UI46 699 aa13.86□□□□□ -0.19
SNX1-214ENST00000625244 HPCAL4Q9UM19 191 aa13.86□□□□□ -0.19
SNX1-214ENST00000625244 ATP8A1Q9Y2Q0 1164 aa13.86□□□□□ -0.19
SNX1-214ENST00000625244 MAP1AP78559 2803 aaPredicted RBP13.85□□□□□ -0.19
SNX1-214ENST00000625244 ZNF469Q96JG9 3925 aaPredicted RBP13.85□□□□□ -0.19
SNX1-214ENST00000625244 GOLGA6L4A6NEF3 574 aa13.85□□□□□ -0.19
SNX1-214ENST00000625244 ZSCAN5CA6NGD5 496 aaPredicted RBP13.85□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 22.8 ms