RNA–Protein interactions for RNA: ENST00000619079.1

UPF3A-212, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF3A, Length 2,423 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-212ENST00000619079 RHOJQ9H4E5 214 aa10.84□□□□□ -0.67
UPF3A-212ENST00000619079 PIH1D1Q9NWS0 290 aaKnown RBP10.84□□□□□ -0.67
UPF3A-212ENST00000619079 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP10.84□□□□□ -0.67
UPF3A-212ENST00000619079 VANGL2Q9ULK5 521 aa10.84□□□□□ -0.67
UPF3A-212ENST00000619079 ACOT9Q9Y305 439 aa10.84□□□□□ -0.67
UPF3A-212ENST00000619079 ZCWPW2A0A1B0GU75 182 aa10.84□□□□□ -0.67
UPF3A-212ENST00000619079 FAM172BPA6NC97 362 aa10.84□□□□□ -0.67
UPF3A-212ENST00000619079 TMEM233B4DJY2 109 aa10.84□□□□□ -0.67
UPF3A-212ENST00000619079 PSMD11O00231 422 aa10.84□□□□□ -0.67
UPF3A-212ENST00000619079 CILPO75339 1184 aa10.84□□□□□ -0.67
UPF3A-212ENST00000619079 SNAP29O95721 258 aa10.84□□□□□ -0.67
UPF3A-212ENST00000619079 NR3C2P08235 984 aa10.84□□□□□ -0.67
UPF3A-212ENST00000619079 PSMB4P28070 264 aa10.84□□□□□ -0.67
UPF3A-212ENST00000619079 GRK3P35626 688 aa10.84□□□□□ -0.67
UPF3A-212ENST00000619079 PTPN9P43378 593 aa10.84□□□□□ -0.67
UPF3A-212ENST00000619079 RAP1GAPP47736 663 aa10.84□□□□□ -0.67
UPF3A-212ENST00000619079 KRT6CP48668 564 aa10.84□□□□□ -0.67
UPF3A-212ENST00000619079 GLUD2P49448 558 aa10.84□□□□□ -0.67
UPF3A-212ENST00000619079 FOXM1Q08050 763 aa10.84□□□□□ -0.67
UPF3A-212ENST00000619079 PRPSAP1Q14558 356 aa10.84□□□□□ -0.67
UPF3A-212ENST00000619079 USP10Q14694 798 aaKnown RBP10.84□□□□□ -0.67
UPF3A-212ENST00000619079 STXBP2Q15833 593 aa10.84□□□□□ -0.67
UPF3A-212ENST00000619079 UGP2Q16851 508 aa10.84□□□□□ -0.67
UPF3A-212ENST00000619079 NCBP2-AS2Q69YL0 99 aa10.84□□□□□ -0.67
UPF3A-212ENST00000619079 TAF2Q6P1X5 1199 aa10.84□□□□□ -0.67
UPF3A-212ENST00000619079 FBXO46Q6PJ61 603 aaPredicted RBP10.84□□□□□ -0.67
UPF3A-212ENST00000619079 HEATR4Q86WZ0 1026 aa10.84□□□□□ -0.67
UPF3A-212ENST00000619079 KIAA2013Q8IYS2 634 aa10.84□□□□□ -0.67
UPF3A-212ENST00000619079 PAPD5Q8NDF8 572 aaKnown RBP10.84□□□□□ -0.67
UPF3A-212ENST00000619079 CCDC126Q96EE4 140 aa10.84□□□□□ -0.67
UPF3A-212ENST00000619079 MOCOSQ96EN8 888 aa10.84□□□□□ -0.67
UPF3A-212ENST00000619079 BDH2Q9BUT1 245 aa10.84□□□□□ -0.67
UPF3A-212ENST00000619079 CYP3A43Q9HB55 503 aa10.84□□□□□ -0.67
UPF3A-212ENST00000619079 JPH1Q9HDC5 661 aaPredicted RBP10.84□□□□□ -0.67
UPF3A-212ENST00000619079 SCUBE2Q9NQ36 999 aa10.84□□□□□ -0.67
UPF3A-212ENST00000619079 RCOR3Q9P2K3 495 aaPredicted RBP10.84□□□□□ -0.67
UPF3A-212ENST00000619079 XPR1Q9UBH6 696 aa10.84□□□□□ -0.67
UPF3A-212ENST00000619079 KIAA1257Q9ULG3 409 aa10.84□□□□□ -0.67
UPF3A-212ENST00000619079 TESMINQ9Y4I5 508 aa10.84□□□□□ -0.67
UPF3A-212ENST00000619079 SPO11Q9Y5K1 396 aa10.84□□□□□ -0.67
UPF3A-212ENST00000619079 SNX5Q9Y5X3 404 aa10.84□□□□□ -0.67
UPF3A-212ENST00000619079 TBKBP1A7MCY6 615 aa10.83□□□□□ -0.68
UPF3A-212ENST00000619079 F5H423 210 aaPredicted RBP10.83□□□□□ -0.68
UPF3A-212ENST00000619079 NME4O00746 187 aa10.83□□□□□ -0.68
UPF3A-212ENST00000619079 NRP1O14786 923 aa10.83□□□□□ -0.68
UPF3A-212ENST00000619079 B4GALT4O60513 344 aa10.83□□□□□ -0.68
UPF3A-212ENST00000619079 GRAP2O75791 330 aa10.83□□□□□ -0.68
UPF3A-212ENST00000619079 GSNP06396 782 aa10.83□□□□□ -0.68
UPF3A-212ENST00000619079 CRHBPP24387 322 aa10.83□□□□□ -0.68
UPF3A-212ENST00000619079 GLRBP48167 497 aa10.83□□□□□ -0.68
UPF3A-212ENST00000619079 GJA9P57773 515 aa10.83□□□□□ -0.68
UPF3A-212ENST00000619079 CYP51A1Q16850 503 aa10.83□□□□□ -0.68
UPF3A-212ENST00000619079 AGMOQ6ZNB7 445 aa10.83□□□□□ -0.68
UPF3A-212ENST00000619079 SLC16A12Q6ZSM3 486 aa10.83□□□□□ -0.68
UPF3A-212ENST00000619079 SLC26A9Q7LBE3 791 aa10.83□□□□□ -0.68
UPF3A-212ENST00000619079 THAP5Q7Z6K1 395 aa10.83□□□□□ -0.68
UPF3A-212ENST00000619079 ZNF467Q7Z7K2 595 aaPredicted RBP10.83□□□□□ -0.68
UPF3A-212ENST00000619079 LRRC49Q8IUZ0 686 aa10.83□□□□□ -0.68
UPF3A-212ENST00000619079 FBXO16Q8IX29 292 aaPredicted RBP10.83□□□□□ -0.68
UPF3A-212ENST00000619079 PEX5LQ8IYB4 626 aa10.83□□□□□ -0.68
UPF3A-212ENST00000619079 SPARTQ8N0X7 666 aa10.83□□□□□ -0.68
UPF3A-212ENST00000619079 SCML4Q8N228 414 aa10.83□□□□□ -0.68
UPF3A-212ENST00000619079 MFSD4AQ8N468 514 aa10.83□□□□□ -0.68
UPF3A-212ENST00000619079 OR7G1Q8NGA0 311 aa10.83□□□□□ -0.68
UPF3A-212ENST00000619079 PXYLP1Q8TE99 480 aa10.83□□□□□ -0.68
UPF3A-212ENST00000619079 KCTD4Q8WVF5 259 aa10.83□□□□□ -0.68
UPF3A-212ENST00000619079 ERLEC1Q96DZ1 483 aa10.83□□□□□ -0.68
UPF3A-212ENST00000619079 CDHR1Q96JP9 859 aa10.83□□□□□ -0.68
UPF3A-212ENST00000619079 RDH12Q96NR8 316 aa10.83□□□□□ -0.68
UPF3A-212ENST00000619079 ARPC5LQ9BPX5 153 aa10.83□□□□□ -0.68
UPF3A-212ENST00000619079 ELOVL4Q9GZR5 314 aa10.83□□□□□ -0.68
UPF3A-212ENST00000619079 ANKHQ9HCJ1 492 aa10.83□□□□□ -0.68
UPF3A-212ENST00000619079 ACSS2Q9NR19 701 aa10.83□□□□□ -0.68
UPF3A-212ENST00000619079 CDKN2AIPQ9NXV6 580 aaPredicted RBP10.83□□□□□ -0.68
UPF3A-212ENST00000619079 ANAPC2Q9UJX6 822 aa10.83□□□□□ -0.68
UPF3A-212ENST00000619079 CPSF3Q9UKF6 684 aaKnown RBP10.83□□□□□ -0.68
UPF3A-212ENST00000619079 BAG5Q9UL15 447 aa10.83□□□□□ -0.68
UPF3A-212ENST00000619079 AP4E1Q9UPM8 1137 aa10.83□□□□□ -0.68
UPF3A-212ENST00000619079 DGKBQ9Y6T7 804 aa10.83□□□□□ -0.68
UPF3A-212ENST00000619079 MGAMO43451 1857 aa10.83□□□□□ -0.68
UPF3A-212ENST00000619079 ERI2A8K979 691 aaKnown RBP10.83□□□□□ -0.68
UPF3A-212ENST00000619079 NOTOA8MTQ0 251 aa10.83□□□□□ -0.68
UPF3A-212ENST00000619079 M0R3G1 203 aa10.83□□□□□ -0.68
UPF3A-212ENST00000619079 ARPC2O15144 300 aa10.83□□□□□ -0.68
UPF3A-212ENST00000619079 INHAP05111 366 aa10.83□□□□□ -0.68
UPF3A-212ENST00000619079 SLC35E2BP0CK96 405 aa10.83□□□□□ -0.68
UPF3A-212ENST00000619079 PRKAR2AP13861 404 aaKnown RBP10.83□□□□□ -0.68
UPF3A-212ENST00000619079 ITIH1P19827 911 aa10.83□□□□□ -0.68
UPF3A-212ENST00000619079 ATP5F1P24539 256 aaPredicted RBP10.83□□□□□ -0.68
UPF3A-212ENST00000619079 ARL4AP40617 200 aa10.83□□□□□ -0.68
UPF3A-212ENST00000619079 ECT2LQ008S8 904 aa10.83□□□□□ -0.68
UPF3A-212ENST00000619079 IFITM3Q01628 133 aa10.83□□□□□ -0.68
UPF3A-212ENST00000619079 IFITM2Q01629 132 aa10.83□□□□□ -0.68
UPF3A-212ENST00000619079 BST2Q10589 180 aaKnown RBP10.83□□□□□ -0.68
UPF3A-212ENST00000619079 EPS8Q12929 822 aa10.83□□□□□ -0.68
UPF3A-212ENST00000619079 TOP3AQ13472 1001 aaPredicted RBP10.83□□□□□ -0.68
UPF3A-212ENST00000619079 AQP6Q13520 282 aa10.83□□□□□ -0.68
UPF3A-212ENST00000619079 SMUG1Q53HV7 270 aa10.83□□□□□ -0.68
UPF3A-212ENST00000619079 PRAMEF19Q5SWL8 479 aa10.83□□□□□ -0.68
UPF3A-212ENST00000619079 PRR23CQ6ZRP0 262 aa10.83□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 39.9 ms