RNA–Protein interactions for RNA: ENST00000599848.5

UPF1-207, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 1 (best) BASIC

Gene UPF1, Length 5,311 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-207ENST00000599848 EFCAB10A6NFE3 127 aa20.48■□□□□ 0.87
UPF1-207ENST00000599848 C22orf31O95567 290 aa20.48■□□□□ 0.87
UPF1-207ENST00000599848 CTPS1P17812 591 aa20.48■□□□□ 0.87
UPF1-207ENST00000599848 ALAS2P22557 587 aa20.48■□□□□ 0.87
UPF1-207ENST00000599848 TGFBR2P37173 567 aa20.48■□□□□ 0.87
UPF1-207ENST00000599848 PLK1P53350 603 aa20.48■□□□□ 0.87
UPF1-207ENST00000599848 STK32CQ86UX6 486 aa20.48■□□□□ 0.87
UPF1-207ENST00000599848 EIF1ADQ8N9N8 165 aaKnown RBP20.48■□□□□ 0.87
UPF1-207ENST00000599848 FLCNQ8NFG4 579 aa20.48■□□□□ 0.87
UPF1-207ENST00000599848 PHF10Q8WUB8 498 aaKnown RBP20.48■□□□□ 0.87
UPF1-207ENST00000599848 TRMT61BQ9BVS5 477 aaKnown RBP20.48■□□□□ 0.87
UPF1-207ENST00000599848 NIFKQ9BYG3 293 aaKnown RBP20.48■□□□□ 0.87
UPF1-207ENST00000599848 NXF3Q9H4D5 531 aaKnown RBP20.48■□□□□ 0.87
UPF1-207ENST00000599848 BLOC1S4Q9NUP1 217 aa20.48■□□□□ 0.87
UPF1-207ENST00000599848 FZD1Q9UP38 647 aa20.48■□□□□ 0.87
UPF1-207ENST00000599848 PRKG2Q13237 762 aa20.47■□□□□ 0.87
UPF1-207ENST00000599848 ANKRD27Q96NW4 1050 aa20.47■□□□□ 0.87
UPF1-207ENST00000599848 RXFP1Q9HBX9 757 aa20.47■□□□□ 0.87
UPF1-207ENST00000599848 CAPN6Q9Y6Q1 641 aa20.47■□□□□ 0.87
UPF1-207ENST00000599848 CYB5AP00167 134 aa20.47■□□□□ 0.87
UPF1-207ENST00000599848 ERFP50548 548 aa20.47■□□□□ 0.87
UPF1-207ENST00000599848 WNT3AP56704 352 aa20.47■□□□□ 0.87
UPF1-207ENST00000599848 C9orf64Q5T6V5 341 aa20.47■□□□□ 0.87
UPF1-207ENST00000599848 RSBN1Q5VWQ0 802 aaPredicted RBP20.47■□□□□ 0.87
UPF1-207ENST00000599848 GMIPQ9P107 970 aa20.47■□□□□ 0.87
UPF1-207ENST00000599848 MTRF1O75570 445 aaKnown RBP20.47■□□□□ 0.87
UPF1-207ENST00000599848 FAM71AQ8IYT1 594 aa20.47■□□□□ 0.87
UPF1-207ENST00000599848 ZNF276Q8N554 614 aa20.47■□□□□ 0.87
UPF1-207ENST00000599848 ATXN2LQ8WWM7 1075 aaKnown RBP20.47■□□□□ 0.87
UPF1-207ENST00000599848 CSPG4P5Q96PW8 444 aa20.47■□□□□ 0.87
UPF1-207ENST00000599848 GLOD4Q9HC38 313 aa20.47■□□□□ 0.87
UPF1-207ENST00000599848 BPIFA1Q9NP55 256 aa20.47■□□□□ 0.87
UPF1-207ENST00000599848 PREX1Q8TCU6 1659 aa20.47■□□□□ 0.87
UPF1-207ENST00000599848 GPR25O00155 361 aa20.47■□□□□ 0.87
UPF1-207ENST00000599848 MATN4O95460 622 aa20.47■□□□□ 0.87
UPF1-207ENST00000599848 ARHGDIBP52566 201 aa20.47■□□□□ 0.87
UPF1-207ENST00000599848 C15orf59Q2T9L4 293 aaPredicted RBP20.47■□□□□ 0.87
UPF1-207ENST00000599848 LDLRAP1Q5SW96 308 aa20.47■□□□□ 0.87
UPF1-207ENST00000599848 PDSS1Q5T2R2 415 aa20.47■□□□□ 0.87
UPF1-207ENST00000599848 RTL3Q8N8U3 475 aaKnown RBP20.47■□□□□ 0.87
UPF1-207ENST00000599848 MTFMTQ96DP5 389 aaKnown RBP20.47■□□□□ 0.87
UPF1-207ENST00000599848 A0A0G2JLL6 359 aaPredicted RBP20.46■□□□□ 0.87
UPF1-207ENST00000599848 TMEM150CB9EJG8 249 aa20.46■□□□□ 0.87
UPF1-207ENST00000599848 AKAP8O43823 692 aaKnown RBP20.46■□□□□ 0.87
UPF1-207ENST00000599848 ITGAVP06756 1048 aa20.46■□□□□ 0.87
UPF1-207ENST00000599848 SPATA31D3P0C874 917 aa20.46■□□□□ 0.87
UPF1-207ENST00000599848 MANFP55145 182 aaKnown RBP20.46■□□□□ 0.87
UPF1-207ENST00000599848 SPATA31D4Q6ZUB0 917 aa20.46■□□□□ 0.87
UPF1-207ENST00000599848 CXXC5Q7LFL8 322 aaKnown RBP20.46■□□□□ 0.87
UPF1-207ENST00000599848 TMC3Q7Z5M5 1100 aa20.46■□□□□ 0.87
UPF1-207ENST00000599848 PRRT2Q7Z6L0 340 aaPredicted RBP20.46■□□□□ 0.87
UPF1-207ENST00000599848 FBXO6Q9NRD1 293 aaPredicted RBP20.46■□□□□ 0.87
UPF1-207ENST00000599848 GHRHRQ02643 423 aa20.46■□□□□ 0.87
UPF1-207ENST00000599848 BNIP2Q12982 314 aa20.46■□□□□ 0.87
UPF1-207ENST00000599848 PDE12Q6L8Q7 609 aaKnown RBP20.46■□□□□ 0.87
UPF1-207ENST00000599848 FAM151BQ6UXP7 276 aa20.46■□□□□ 0.87
UPF1-207ENST00000599848 SNX20Q7Z614 316 aa20.46■□□□□ 0.87
UPF1-207ENST00000599848 LINGO1Q96FE5 620 aa20.46■□□□□ 0.87
UPF1-207ENST00000599848 KIFC1Q9BW19 673 aa20.46■□□□□ 0.87
UPF1-207ENST00000599848 KCNK4Q9NYG8 393 aa20.46■□□□□ 0.87
UPF1-207ENST00000599848 FBXO5Q9UKT4 447 aa20.46■□□□□ 0.87
UPF1-207ENST00000599848 KIAA1210Q9ULL0 1709 aa20.46■□□□□ 0.87
UPF1-207ENST00000599848 MT-CO1P00395 513 aa20.46■□□□□ 0.87
UPF1-207ENST00000599848 HNF4AP41235 474 aa20.46■□□□□ 0.87
UPF1-207ENST00000599848 KCNMA1Q12791 1236 aa20.46■□□□□ 0.87
UPF1-207ENST00000599848 ELOAQ14241 798 aaKnown RBP20.46■□□□□ 0.87
UPF1-207ENST00000599848 CERS5Q8N5B7 392 aa20.46■□□□□ 0.87
UPF1-207ENST00000599848 ERLEC1Q96DZ1 483 aa20.46■□□□□ 0.87
UPF1-207ENST00000599848 MTF2Q9Y483 593 aaPredicted RBP20.46■□□□□ 0.87
UPF1-207ENST00000599848 CLOCKO15516 846 aa20.46■□□□□ 0.87
UPF1-207ENST00000599848 CCKBRP32239 447 aa20.46■□□□□ 0.87
UPF1-207ENST00000599848 NDUFA5Q16718 116 aa20.46■□□□□ 0.87
UPF1-207ENST00000599848 LIN54Q6MZP7 749 aa20.46■□□□□ 0.87
UPF1-207ENST00000599848 ALKBH2Q6NS38 261 aa20.46■□□□□ 0.87
UPF1-207ENST00000599848 LCLAT1Q6UWP7 414 aa20.46■□□□□ 0.87
UPF1-207ENST00000599848 OR8H2Q8N162 312 aa20.46■□□□□ 0.87
UPF1-207ENST00000599848 DHRSXQ8N5I4 330 aa20.46■□□□□ 0.87
UPF1-207ENST00000599848 KCTD13Q8WZ19 329 aa20.46■□□□□ 0.87
UPF1-207ENST00000599848 RBM18Q96H35 190 aaKnown RBP20.46■□□□□ 0.87
UPF1-207ENST00000599848 DDX18Q9NVP1 670 aaKnown RBP20.46■□□□□ 0.87
UPF1-207ENST00000599848 PCDHGB5Q9Y5G0 923 aa20.46■□□□□ 0.87
UPF1-207ENST00000599848 IRAK2O43187 625 aa20.46■□□□□ 0.87
UPF1-207ENST00000599848 ZNF155Q12901 538 aaPredicted RBP20.46■□□□□ 0.87
UPF1-207ENST00000599848 RFX4Q33E94 735 aa20.46■□□□□ 0.87
UPF1-207ENST00000599848 CHST15Q7LFX5 561 aaPredicted RBP20.46■□□□□ 0.87
UPF1-207ENST00000599848 TCP10LQ8TDR4 215 aa20.46■□□□□ 0.87
UPF1-207ENST00000599848 NCDNQ9UBB6 729 aa20.46■□□□□ 0.87
UPF1-207ENST00000599848 DDX3XO00571 662 aaKnown RBP eCLIP20.45■□□□□ 0.869e-36■■□□□ 13.8
UPF1-207ENST00000599848 PCCBP05166 539 aa20.45■□□□□ 0.86
UPF1-207ENST00000599848 NR2C1P13056 603 aa20.45■□□□□ 0.86
UPF1-207ENST00000599848 ACLYP53396 1101 aa20.45■□□□□ 0.86
UPF1-207ENST00000599848 PRKCZQ05513 592 aa20.45■□□□□ 0.86
UPF1-207ENST00000599848 MSANTD2Q6P1R3 559 aa20.45■□□□□ 0.86
UPF1-207ENST00000599848 UNC5AQ6ZN44 842 aa20.45■□□□□ 0.86
UPF1-207ENST00000599848 TTLQ8NG68 377 aa20.45■□□□□ 0.86
UPF1-207ENST00000599848 KLHL25Q9H0H3 589 aa20.45■□□□□ 0.86
UPF1-207ENST00000599848 SLC28A2O43868 658 aa20.45■□□□□ 0.86
UPF1-207ENST00000599848 SH3BGRLO75368 114 aa20.45■□□□□ 0.86
UPF1-207ENST00000599848 ERICH5Q6P6B1 374 aa20.45■□□□□ 0.86
UPF1-207ENST00000599848 PIK3C3Q8NEB9 887 aa20.45■□□□□ 0.86
Retrieved 100 of 20,778 RNA–protein pairs in 25.4 ms