RNA–Protein interactions for RNA: ENST00000599833.1

SHKBP1-221, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 761 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-221ENST00000599833 WNT3AP56704 352 aa19.52■□□□□ 0.72
SHKBP1-221ENST00000599833 SLC14A1Q13336 389 aa19.52■□□□□ 0.72
SHKBP1-221ENST00000599833 LRRC14Q15048 493 aa19.52■□□□□ 0.72
SHKBP1-221ENST00000599833 PCSK7Q16549 785 aa19.52■□□□□ 0.72
SHKBP1-221ENST00000599833 KCTD16Q68DU8 428 aa19.52■□□□□ 0.72
SHKBP1-221ENST00000599833 ESRP1Q6NXG1 681 aaKnown RBP19.52■□□□□ 0.72
SHKBP1-221ENST00000599833 TMEM121Q9BTD3 319 aa19.52■□□□□ 0.72
SHKBP1-221ENST00000599833 FAM153AQ9UHL3 310 aa19.52■□□□□ 0.72
SHKBP1-221ENST00000599833 KLF15Q9UIH9 416 aa19.52■□□□□ 0.72
SHKBP1-221ENST00000599833 PCDHGB2Q9Y5G2 931 aa19.52■□□□□ 0.72
SHKBP1-221ENST00000599833 SPO11Q9Y5K1 396 aa19.52■□□□□ 0.72
SHKBP1-221ENST00000599833 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP19.52■□□□□ 0.72
SHKBP1-221ENST00000599833 MYLKQ15746 1914 aa19.52■□□□□ 0.72
SHKBP1-221ENST00000599833 WDFY3Q8IZQ1 3526 aa19.52■□□□□ 0.71
SHKBP1-221ENST00000599833 SPTY2D1-AS1A0A0U1RR47 76 aa19.51■□□□□ 0.71
SHKBP1-221ENST00000599833 LZTS3O60299 673 aaPredicted RBP19.51■□□□□ 0.71
SHKBP1-221ENST00000599833 PCDHGA12O60330 932 aa19.51■□□□□ 0.71
SHKBP1-221ENST00000599833 CBFA2T3O75081 653 aa19.51■□□□□ 0.71
SHKBP1-221ENST00000599833 CLDN7O95471 211 aa19.51■□□□□ 0.71
SHKBP1-221ENST00000599833 METTL18O95568 372 aa19.51■□□□□ 0.71
SHKBP1-221ENST00000599833 NDST3O95803 873 aa19.51■□□□□ 0.71
SHKBP1-221ENST00000599833 CA4P22748 312 aa19.51■□□□□ 0.71
SHKBP1-221ENST00000599833 TRIM23P36406 574 aa19.51■□□□□ 0.71
SHKBP1-221ENST00000599833 CHRNA4P43681 627 aa19.51■□□□□ 0.71
SHKBP1-221ENST00000599833 ATXN3P54252 364 aaPredicted RBP19.51■□□□□ 0.71
SHKBP1-221ENST00000599833 IL9RQ01113 521 aa19.51■□□□□ 0.71
SHKBP1-221ENST00000599833 EIF2B5Q13144 721 aaKnown RBP19.51■□□□□ 0.71
SHKBP1-221ENST00000599833 MSLNQ13421 630 aaPredicted RBP19.51■□□□□ 0.71
SHKBP1-221ENST00000599833 OLIG2Q13516 323 aa19.51■□□□□ 0.71
SHKBP1-221ENST00000599833 PUM1Q14671 1186 aaKnown RBP eCLIP19.51■□□□□ 0.71
SHKBP1-221ENST00000599833 UAP1L1Q3KQV9 507 aa19.51■□□□□ 0.71
SHKBP1-221ENST00000599833 ZNF569Q5MCW4 686 aa19.51■□□□□ 0.71
SHKBP1-221ENST00000599833 Q6ZVL8 140 aa19.51■□□□□ 0.71
SHKBP1-221ENST00000599833 KDELC2Q7Z4H8 507 aa19.51■□□□□ 0.71
SHKBP1-221ENST00000599833 PTAR1Q7Z6K3 402 aaPredicted RBP19.51■□□□□ 0.71
SHKBP1-221ENST00000599833 FAM71DQ8N9W8 422 aa19.51■□□□□ 0.71
SHKBP1-221ENST00000599833 BAHD1Q8TBE0 780 aaPredicted RBP19.51■□□□□ 0.71
SHKBP1-221ENST00000599833 SAP25Q8TEE9 199 aa19.51■□□□□ 0.71
SHKBP1-221ENST00000599833 KCND1Q9NSA2 647 aa19.51■□□□□ 0.71
SHKBP1-221ENST00000599833 RSPH14Q9UHP6 348 aa19.51■□□□□ 0.71
SHKBP1-221ENST00000599833 COL5A1P20908 1838 aaPredicted RBP19.51■□□□□ 0.71
SHKBP1-221ENST00000599833 ASPMQ8IZT6 3477 aa19.5■□□□□ 0.71
SHKBP1-221ENST00000599833 DCDC2BA2VCK2 349 aa19.5■□□□□ 0.71
SHKBP1-221ENST00000599833 MAGEC1O60732 1142 aa19.5■□□□□ 0.71
SHKBP1-221ENST00000599833 GCATO75600 419 aa19.5■□□□□ 0.71
SHKBP1-221ENST00000599833 EPOP01588 193 aa19.5■□□□□ 0.71
SHKBP1-221ENST00000599833 ZNF30P17039 623 aa19.5■□□□□ 0.71
SHKBP1-221ENST00000599833 SDHBP21912 280 aa19.5■□□□□ 0.71
SHKBP1-221ENST00000599833 EPHA8P29322 1005 aaPredicted RBP19.5■□□□□ 0.71
SHKBP1-221ENST00000599833 YPEL5P62699 121 aa19.5■□□□□ 0.71
SHKBP1-221ENST00000599833 BNIP3Q12983 259 aa19.5■□□□□ 0.71
SHKBP1-221ENST00000599833 MPP3Q13368 585 aa19.5■□□□□ 0.71
SHKBP1-221ENST00000599833 INPP5AQ14642 412 aa19.5■□□□□ 0.71
SHKBP1-221ENST00000599833 KCTD11Q693B1 232 aa19.5■□□□□ 0.71
SHKBP1-221ENST00000599833 DCP2Q8IU60 420 aaKnown RBP19.5■□□□□ 0.71
SHKBP1-221ENST00000599833 GLIS1Q8NBF1 620 aa19.5■□□□□ 0.71
SHKBP1-221ENST00000599833 C1orf54Q8WWF1 131 aa19.5■□□□□ 0.71
SHKBP1-221ENST00000599833 SKA1Q96BD8 255 aa19.5■□□□□ 0.71
SHKBP1-221ENST00000599833 CAMK1GQ96NX5 476 aa19.5■□□□□ 0.71
SHKBP1-221ENST00000599833 C1QTNF7Q9BXJ2 289 aa19.5■□□□□ 0.71
SHKBP1-221ENST00000599833 FRMD8P1Q9BZ68 369 aaPredicted RBP19.5■□□□□ 0.71
SHKBP1-221ENST00000599833 BTBD3Q9Y2F9 522 aa19.5■□□□□ 0.71
SHKBP1-221ENST00000599833 ZNF106Q9H2Y7 1883 aaKnown RBP19.5■□□□□ 0.71
SHKBP1-221ENST00000599833 GOLGA8CPA6NN73 597 aa19.49■□□□□ 0.71
SHKBP1-221ENST00000599833 TOR1BO14657 336 aa19.49■□□□□ 0.71
SHKBP1-221ENST00000599833 AURKAO14965 403 aa19.49■□□□□ 0.71
SHKBP1-221ENST00000599833 DFNA5O60443 496 aa19.49■□□□□ 0.71
SHKBP1-221ENST00000599833 FGGP02679 453 aa19.49■□□□□ 0.71
SHKBP1-221ENST00000599833 PCCBP05166 539 aa19.49■□□□□ 0.71
SHKBP1-221ENST00000599833 PIRTP0C851 137 aa19.49■□□□□ 0.71
SHKBP1-221ENST00000599833 GIMD1P0DJR0 217 aa19.49■□□□□ 0.71
SHKBP1-221ENST00000599833 CSRP1P21291 193 aaKnown RBP19.49■□□□□ 0.71
SHKBP1-221ENST00000599833 CCT8P50990 548 aa19.49■□□□□ 0.71
SHKBP1-221ENST00000599833 EPHB1P54762 984 aa19.49■□□□□ 0.71
SHKBP1-221ENST00000599833 DPTQ07507 201 aa19.49■□□□□ 0.71
SHKBP1-221ENST00000599833 MTM1Q13496 603 aa19.49■□□□□ 0.71
SHKBP1-221ENST00000599833 ACOX1Q15067 660 aa19.49■□□□□ 0.71
SHKBP1-221ENST00000599833 SLC1A5Q15758 541 aa19.49■□□□□ 0.71
SHKBP1-221ENST00000599833 SIRPB2Q5JXA9 342 aa19.49■□□□□ 0.71
SHKBP1-221ENST00000599833 DRICH1Q6PGQ1 229 aaPredicted RBP19.49■□□□□ 0.71
SHKBP1-221ENST00000599833 RANBP10Q6VN20 620 aa19.49■□□□□ 0.71
SHKBP1-221ENST00000599833 LYSMD3Q7Z3D4 306 aa19.49■□□□□ 0.71
SHKBP1-221ENST00000599833 RAVER1Q8IY67 606 aaKnown RBP19.49■□□□□ 0.71
SHKBP1-221ENST00000599833 PAF1Q8N7H5 531 aa19.49■□□□□ 0.71
SHKBP1-221ENST00000599833 NUS1Q96E22 293 aa19.49■□□□□ 0.71
SHKBP1-221ENST00000599833 IFT43Q96FT9 208 aa19.49■□□□□ 0.71
SHKBP1-221ENST00000599833 MS4A14Q96JA4 679 aa19.49■□□□□ 0.71
SHKBP1-221ENST00000599833 APOOQ9BUR5 198 aa19.49■□□□□ 0.71
SHKBP1-221ENST00000599833 ADGRE3Q9BY15 652 aa19.49■□□□□ 0.71
SHKBP1-221ENST00000599833 ABCG8Q9H221 673 aa19.49■□□□□ 0.71
SHKBP1-221ENST00000599833 MAGEE1Q9HCI5 957 aa19.49■□□□□ 0.71
SHKBP1-221ENST00000599833 OR1A2Q9Y585 309 aa19.49■□□□□ 0.71
SHKBP1-221ENST00000599833 SH3BP5O60239 455 aa19.48■□□□□ 0.71
SHKBP1-221ENST00000599833 PDE1CQ14123 709 aaPredicted RBP19.48■□□□□ 0.71
SHKBP1-221ENST00000599833 CCNG2Q16589 344 aa19.48■□□□□ 0.71
SHKBP1-221ENST00000599833 DENND2CQ68D51 928 aa19.48■□□□□ 0.71
SHKBP1-221ENST00000599833 ITPRIPL1Q6GPH6 555 aa19.48■□□□□ 0.71
SHKBP1-221ENST00000599833 DENND5AQ6IQ26 1287 aa19.48■□□□□ 0.71
SHKBP1-221ENST00000599833 PNCKQ6P2M8 343 aa19.48■□□□□ 0.71
SHKBP1-221ENST00000599833 MACC1Q6ZN28 852 aa19.48■□□□□ 0.71
Retrieved 100 of 20,778 RNA–protein pairs in 18.4 ms