RNA–Protein interactions for RNA: ENST00000578700.5

SS18-210, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 5

Gene SS18, Length 575 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-210ENST00000578700 AGO1Q9UL18 857 aaKnown RBP10.26□□□□□ -0.77
SS18-210ENST00000578700 RAI2Q9Y5P3 530 aa10.26□□□□□ -0.77
SS18-210ENST00000578700 MAD1L1Q9Y6D9 718 aa10.26□□□□□ -0.77
SS18-210ENST00000578700 NAV2Q8IVL1 2488 aa10.26□□□□□ -0.77
SS18-210ENST00000578700 ZNF462Q96JM2 2506 aa10.25□□□□□ -0.77
SS18-210ENST00000578700 RASA4BC9J798 803 aa10.25□□□□□ -0.77
SS18-210ENST00000578700 CBX4O00257 560 aa10.25□□□□□ -0.77
SS18-210ENST00000578700 RASA4O43374 803 aa10.25□□□□□ -0.77
SS18-210ENST00000578700 CLDN11O75508 207 aa10.25□□□□□ -0.77
SS18-210ENST00000578700 DKK1O94907 266 aa10.25□□□□□ -0.77
SS18-210ENST00000578700 SEMA4FO95754 770 aa10.25□□□□□ -0.77
SS18-210ENST00000578700 PENKP01210 267 aaPredicted RBP10.25□□□□□ -0.77
SS18-210ENST00000578700 NR1D1P20393 614 aa10.25□□□□□ -0.77
SS18-210ENST00000578700 PSMB4P28070 264 aa10.25□□□□□ -0.77
SS18-210ENST00000578700 STX2P32856 288 aa10.25□□□□□ -0.77
SS18-210ENST00000578700 ETFBP38117 255 aa10.25□□□□□ -0.77
SS18-210ENST00000578700 ELK3P41970 407 aa10.25□□□□□ -0.77
SS18-210ENST00000578700 PAPOLAP51003 745 aaKnown RBP10.25□□□□□ -0.77
SS18-210ENST00000578700 C21orf59P57076 290 aa10.25□□□□□ -0.77
SS18-210ENST00000578700 IFI35P80217 286 aaPredicted RBP10.25□□□□□ -0.77
SS18-210ENST00000578700 POLD3Q15054 466 aaPredicted RBP10.25□□□□□ -0.77
SS18-210ENST00000578700 E2F5Q15329 346 aa10.25□□□□□ -0.77
SS18-210ENST00000578700 SMAD1Q15797 465 aaKnown RBP10.25□□□□□ -0.77
SS18-210ENST00000578700 PTPRNQ16849 979 aa10.25□□□□□ -0.77
SS18-210ENST00000578700 TTMPQ5BVD1 217 aa10.25□□□□□ -0.77
SS18-210ENST00000578700 HP1BP3Q5SSJ5 553 aaPredicted RBP10.25□□□□□ -0.77
SS18-210ENST00000578700 TMEM215Q68D42 235 aa10.25□□□□□ -0.77
SS18-210ENST00000578700 NAPEPLDQ6IQ20 393 aa10.25□□□□□ -0.77
SS18-210ENST00000578700 CASC4Q6P4E1 433 aa10.25□□□□□ -0.77
SS18-210ENST00000578700 C3orf62Q6ZUJ4 267 aa10.25□□□□□ -0.77
SS18-210ENST00000578700 ZNF605Q86T29 641 aa10.25□□□□□ -0.77
SS18-210ENST00000578700 DNAAF3Q8N9W5 541 aa10.25□□□□□ -0.77
SS18-210ENST00000578700 IGSF8Q969P0 613 aa10.25□□□□□ -0.77
SS18-210ENST00000578700 BIRC7Q96CA5 298 aa10.25□□□□□ -0.77
SS18-210ENST00000578700 TEKT5Q96M29 485 aa10.25□□□□□ -0.77
SS18-210ENST00000578700 AGAP3Q96P47 875 aa10.25□□□□□ -0.77
SS18-210ENST00000578700 CYTH2Q99418 400 aa10.25□□□□□ -0.77
SS18-210ENST00000578700 PRMT1Q99873 361 aaKnown RBP10.25□□□□□ -0.77
SS18-210ENST00000578700 EPB41L4BQ9H329 900 aa10.25□□□□□ -0.77
SS18-210ENST00000578700 CNOT10Q9H9A5 744 aaKnown RBP10.25□□□□□ -0.77
SS18-210ENST00000578700 SAMD15Q9P1V8 674 aa10.25□□□□□ -0.77
SS18-210ENST00000578700 IPO11Q9UI26 975 aaKnown RBP10.25□□□□□ -0.77
SS18-210ENST00000578700 SLC24A2Q9UI40 661 aa10.25□□□□□ -0.77
SS18-210ENST00000578700 ADAM21Q9UKJ8 722 aa10.25□□□□□ -0.77
SS18-210ENST00000578700 NOVA2Q9UNW9 492 aaKnown RBP10.25□□□□□ -0.77
SS18-210ENST00000578700 PLA2G4CQ9UP65 541 aa10.25□□□□□ -0.77
SS18-210ENST00000578700 CHMP2BQ9UQN3 213 aa10.25□□□□□ -0.77
SS18-210ENST00000578700 ZBTB32Q9Y2Y4 487 aaPredicted RBP10.25□□□□□ -0.77
SS18-210ENST00000578700 TTLL3Q9Y4R7 772 aa10.25□□□□□ -0.77
SS18-210ENST00000578700 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP10.24□□□□□ -0.77
SS18-210ENST00000578700 TCRBV7S3A2A0A539 114 aa10.24□□□□□ -0.77
SS18-210ENST00000578700 MAGEB16A2A368 324 aa10.24□□□□□ -0.77
SS18-210ENST00000578700 SDR42E2A6NKP2 422 aa10.24□□□□□ -0.77
SS18-210ENST00000578700 RRP8O43159 456 aaKnown RBP10.24□□□□□ -0.77
SS18-210ENST00000578700 TIMM44O43615 452 aa10.24□□□□□ -0.77
SS18-210ENST00000578700 TLX3O43711 291 aaPredicted RBP10.24□□□□□ -0.77
SS18-210ENST00000578700 MAFKO60675 156 aa10.24□□□□□ -0.77
SS18-210ENST00000578700 LDOC1O95751 146 aaPredicted RBP10.24□□□□□ -0.77
SS18-210ENST00000578700 AP2A1O95782 977 aa10.24□□□□□ -0.77
SS18-210ENST00000578700 IGLV3-19P01714 112 aa10.24□□□□□ -0.77
SS18-210ENST00000578700 DNTTP04053 509 aa10.24□□□□□ -0.77
SS18-210ENST00000578700 NFKB1P19838 968 aa10.24□□□□□ -0.77
SS18-210ENST00000578700 HPDP32754 393 aaPredicted RBP10.24□□□□□ -0.77
SS18-210ENST00000578700 MSH2P43246 934 aa10.24□□□□□ -0.77
SS18-210ENST00000578700 MMP13P45452 471 aa10.24□□□□□ -0.77
SS18-210ENST00000578700 SLCO1A2P46721 670 aa10.24□□□□□ -0.77
SS18-210ENST00000578700 GRIA4P48058 902 aa10.24□□□□□ -0.77
SS18-210ENST00000578700 GEMP55040 296 aa10.24□□□□□ -0.77
SS18-210ENST00000578700 CDH4P55283 916 aa10.24□□□□□ -0.77
SS18-210ENST00000578700 GEMIN4P57678 1058 aaKnown RBP10.24□□□□□ -0.77
SS18-210ENST00000578700 CBLBQ13191 982 aa10.24□□□□□ -0.77
SS18-210ENST00000578700 DNAJC3Q13217 504 aa10.24□□□□□ -0.77
SS18-210ENST00000578700 ZNF177Q13360 481 aaPredicted RBP10.24□□□□□ -0.77
SS18-210ENST00000578700 ENPP2Q13822 863 aa10.24□□□□□ -0.77
SS18-210ENST00000578700 LONRF1Q17RB8 773 aa10.24□□□□□ -0.77
SS18-210ENST00000578700 INAVAQ3KP66 663 aa10.24□□□□□ -0.77
SS18-210ENST00000578700 ADGRF1Q5T601 910 aa10.24□□□□□ -0.77
SS18-210ENST00000578700 LGSNQ5TDP6 509 aa10.24□□□□□ -0.77
SS18-210ENST00000578700 MARC1Q5VT66 337 aa10.24□□□□□ -0.77
SS18-210ENST00000578700 AFMIDQ63HM1 303 aa10.24□□□□□ -0.77
SS18-210ENST00000578700 LRRC8BQ6P9F7 803 aa10.24□□□□□ -0.77
SS18-210ENST00000578700 KDM7AQ6ZMT4 941 aa10.24□□□□□ -0.77
SS18-210ENST00000578700 CAPN12Q6ZSI9 719 aa10.24□□□□□ -0.77
SS18-210ENST00000578700 CHST9Q7L1S5 443 aa10.24□□□□□ -0.77
SS18-210ENST00000578700 NLRP14Q86W24 1093 aa10.24□□□□□ -0.77
SS18-210ENST00000578700 TMPRSS12Q86WS5 348 aa10.24□□□□□ -0.77
SS18-210ENST00000578700 ARHGAP12Q8IWW6 846 aa10.24□□□□□ -0.77
SS18-210ENST00000578700 NETO2Q8NC67 525 aa10.24□□□□□ -0.77
SS18-210ENST00000578700 EPS8L3Q8TE67 593 aaKnown RBP10.24□□□□□ -0.77
SS18-210ENST00000578700 FATE1Q969F0 183 aa10.24□□□□□ -0.77
SS18-210ENST00000578700 CFAP36Q96G28 342 aa10.24□□□□□ -0.77
SS18-210ENST00000578700 CNDP2Q96KP4 475 aaKnown RBP10.24□□□□□ -0.77
SS18-210ENST00000578700 CEP41Q9BYV8 373 aa10.24□□□□□ -0.77
SS18-210ENST00000578700 MAGEH1Q9H213 219 aa10.24□□□□□ -0.77
SS18-210ENST00000578700 LRRC4CQ9HCJ2 640 aa10.24□□□□□ -0.77
SS18-210ENST00000578700 RBM22Q9NW64 420 aaKnown RBP eCLIP10.24□□□□□ -0.777e-7■■■□□ 14.8
SS18-210ENST00000578700 BFARQ9NZS9 450 aa10.24□□□□□ -0.77
SS18-210ENST00000578700 FETUBQ9UGM5 382 aa10.24□□□□□ -0.77
SS18-210ENST00000578700 NEU3Q9UQ49 428 aa10.24□□□□□ -0.77
SS18-210ENST00000578700 MYLKQ15746 1914 aa10.24□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms