RNA–Protein interactions for RNA: ENST00000575976.1

NUP88-211, Transcript of nucleoporin 88, humanhuman

TSL 2

Gene NUP88, Length 599 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-211ENST00000575976 FOXJ1Q92949 421 aa8.58□□□□□ -1.04
NUP88-211ENST00000575976 COL26A1Q96A83 441 aa8.58□□□□□ -1.04
NUP88-211ENST00000575976 LYSMD1Q96S90 227 aa8.58□□□□□ -1.04
NUP88-211ENST00000575976 LRRC1Q9BTT6 524 aa8.58□□□□□ -1.04
NUP88-211ENST00000575976 TRIM31Q9BZY9 425 aa8.58□□□□□ -1.04
NUP88-211ENST00000575976 PCED1AQ9H1Q7 454 aa8.58□□□□□ -1.04
NUP88-211ENST00000575976 L2HGDHQ9H9P8 463 aa8.58□□□□□ -1.04
NUP88-211ENST00000575976 ARNT2Q9HBZ2 717 aa8.58□□□□□ -1.04
NUP88-211ENST00000575976 CASS4Q9NQ75 786 aa8.58□□□□□ -1.04
NUP88-211ENST00000575976 EIF2B3Q9NR50 452 aaKnown RBP8.58□□□□□ -1.04
NUP88-211ENST00000575976 TPX2Q9ULW0 747 aaKnown RBP8.58□□□□□ -1.04
NUP88-211ENST00000575976 SHOC2Q9UQ13 582 aa8.58□□□□□ -1.04
NUP88-211ENST00000575976 ZBTB32Q9Y2Y4 487 aaPredicted RBP8.58□□□□□ -1.04
NUP88-211ENST00000575976 ZNF711Q9Y462 761 aa8.58□□□□□ -1.04
NUP88-211ENST00000575976 ANKRD11Q6UB99 2663 aaPredicted RBP8.57□□□□□ -1.04
NUP88-211ENST00000575976 NUMA1Q14980 2115 aa8.57□□□□□ -1.04
NUP88-211ENST00000575976 C1orf232A0A0U1RR37 186 aa8.57□□□□□ -1.04
NUP88-211ENST00000575976 A0A1W2PPC4 97 aa8.57□□□□□ -1.04
NUP88-211ENST00000575976 MEI4A8MW99 385 aa8.57□□□□□ -1.04
NUP88-211ENST00000575976 LATO43561 262 aa8.57□□□□□ -1.04
NUP88-211ENST00000575976 LZTS3O60299 673 aaPredicted RBP8.57□□□□□ -1.04
NUP88-211ENST00000575976 RECQL5O94762 991 aaPredicted RBP8.57□□□□□ -1.04
NUP88-211ENST00000575976 SLC4A1P02730 911 aa8.57□□□□□ -1.04
NUP88-211ENST00000575976 ELFN1P0C7U0 828 aa8.57□□□□□ -1.04
NUP88-211ENST00000575976 ZNF30P17039 623 aa8.57□□□□□ -1.04
NUP88-211ENST00000575976 STC1P52823 247 aa8.57□□□□□ -1.04
NUP88-211ENST00000575976 CDK16Q00536 496 aa8.57□□□□□ -1.04
NUP88-211ENST00000575976 SLC7A5Q01650 507 aa8.57□□□□□ -1.04
NUP88-211ENST00000575976 PTSQ03393 145 aa8.57□□□□□ -1.04
NUP88-211ENST00000575976 SGCGQ13326 291 aa8.57□□□□□ -1.04
NUP88-211ENST00000575976 ACOX1Q15067 660 aa8.57□□□□□ -1.04
NUP88-211ENST00000575976 ELF2Q15723 593 aa8.57□□□□□ -1.04
NUP88-211ENST00000575976 SPDYCQ5MJ68 293 aa8.57□□□□□ -1.04
NUP88-211ENST00000575976 CERCAMQ5T4B2 595 aa8.57□□□□□ -1.04
NUP88-211ENST00000575976 RNASEH2BQ5TBB1 312 aaKnown RBP8.57□□□□□ -1.04
NUP88-211ENST00000575976 IZUMO3Q5VZ72 239 aa8.57□□□□□ -1.04
NUP88-211ENST00000575976 LYSMD4Q5XG99 296 aa8.57□□□□□ -1.04
NUP88-211ENST00000575976 C8orf74Q6P047 294 aa8.57□□□□□ -1.04
NUP88-211ENST00000575976 RFLNAQ6ZTI6 216 aa8.57□□□□□ -1.04
NUP88-211ENST00000575976 ZNF534Q76KX8 674 aa8.57□□□□□ -1.04
NUP88-211ENST00000575976 LYSMD3Q7Z3D4 306 aa8.57□□□□□ -1.04
NUP88-211ENST00000575976 HSD11B1LQ7Z5J1 315 aa8.57□□□□□ -1.04
NUP88-211ENST00000575976 TMC3Q7Z5M5 1100 aa8.57□□□□□ -1.04
NUP88-211ENST00000575976 PPIL6Q8IXY8 311 aa8.57□□□□□ -1.04
NUP88-211ENST00000575976 RGL4Q8IZJ4 473 aa8.57□□□□□ -1.04
NUP88-211ENST00000575976 TTC30BQ8N4P2 665 aa8.57□□□□□ -1.04
NUP88-211ENST00000575976 DNAAF3Q8N9W5 541 aa8.57□□□□□ -1.04
NUP88-211ENST00000575976 LRRN4CLQ8ND94 238 aa8.57□□□□□ -1.04
NUP88-211ENST00000575976 DNASE2BQ8WZ79 361 aa8.57□□□□□ -1.04
NUP88-211ENST00000575976 SNX19Q92543 992 aa8.57□□□□□ -1.04
NUP88-211ENST00000575976 EID2BQ96D98 161 aa8.57□□□□□ -1.04
NUP88-211ENST00000575976 COQ10AQ96MF6 247 aa8.57□□□□□ -1.04
NUP88-211ENST00000575976 MYOCQ99972 504 aa8.57□□□□□ -1.04
NUP88-211ENST00000575976 ORAI3Q9BRQ5 295 aa8.57□□□□□ -1.04
NUP88-211ENST00000575976 ERP44Q9BS26 406 aa8.57□□□□□ -1.04
NUP88-211ENST00000575976 C1QTNF2Q9BXJ5 285 aa8.57□□□□□ -1.04
NUP88-211ENST00000575976 SLC17A9Q9BYT1 436 aa8.57□□□□□ -1.04
NUP88-211ENST00000575976 GPR63Q9BZJ6 419 aa8.57□□□□□ -1.04
NUP88-211ENST00000575976 EPC1Q9H2F5 836 aa8.57□□□□□ -1.04
NUP88-211ENST00000575976 DPH5Q9H2P9 285 aa8.57□□□□□ -1.04
NUP88-211ENST00000575976 ZFYVE1Q9HBF4 777 aa8.57□□□□□ -1.04
NUP88-211ENST00000575976 FZD3Q9NPG1 666 aa8.57□□□□□ -1.04
NUP88-211ENST00000575976 DLL3Q9NYJ7 618 aa8.57□□□□□ -1.04
NUP88-211ENST00000575976 HACD3Q9P035 362 aa8.57□□□□□ -1.04
NUP88-211ENST00000575976 EIF2B4Q9UI10 523 aaKnown RBP8.57□□□□□ -1.04
NUP88-211ENST00000575976 SNX24Q9Y343 169 aa8.57□□□□□ -1.04
NUP88-211ENST00000575976 SLCO1B1Q9Y6L6 691 aa8.57□□□□□ -1.04
NUP88-211ENST00000575976 EP300Q09472 2414 aaPredicted RBP8.56□□□□□ -1.04
NUP88-211ENST00000575976 PLXND1Q9Y4D7 1925 aa8.56□□□□□ -1.04
NUP88-211ENST00000575976 GOLGA8MH3BSY2 632 aa8.56□□□□□ -1.04
NUP88-211ENST00000575976 PSMD11O00231 422 aa8.56□□□□□ -1.04
NUP88-211ENST00000575976 WNT9AO14904 365 aa8.56□□□□□ -1.04
NUP88-211ENST00000575976 RAD51BO15315 384 aa8.56□□□□□ -1.04
NUP88-211ENST00000575976 BUD23O43709 281 aaKnown RBP8.56□□□□□ -1.04
NUP88-211ENST00000575976 SEC31AO94979 1220 aaKnown RBP8.56□□□□□ -1.04
NUP88-211ENST00000575976 HNRNPA2B1P22626 353 aaKnown RBP8.56□□□□□ -1.04
NUP88-211ENST00000575976 ITPKAP23677 461 aa8.56□□□□□ -1.04
NUP88-211ENST00000575976 CD27P26842 260 aa8.56□□□□□ -1.04
NUP88-211ENST00000575976 ETV3P41162 512 aa8.56□□□□□ -1.04
NUP88-211ENST00000575976 RPL21P46778 160 aaKnown RBP8.56□□□□□ -1.04
NUP88-211ENST00000575976 ITGA8P53708 1063 aa8.56□□□□□ -1.04
NUP88-211ENST00000575976 SESN2P58004 480 aaPredicted RBP8.56□□□□□ -1.04
NUP88-211ENST00000575976 SARNPP82979 210 aaKnown RBP8.56□□□□□ -1.04
NUP88-211ENST00000575976 CREB5Q02930 508 aa8.56□□□□□ -1.04
NUP88-211ENST00000575976 CDH17Q12864 832 aa8.56□□□□□ -1.04
NUP88-211ENST00000575976 MTM1Q13496 603 aa8.56□□□□□ -1.04
NUP88-211ENST00000575976 COL9A2Q14055 689 aaPredicted RBP8.56□□□□□ -1.04
NUP88-211ENST00000575976 PTPRCAPQ14761 206 aa8.56□□□□□ -1.04
NUP88-211ENST00000575976 ST3GAL2Q16842 350 aa8.56□□□□□ -1.04
NUP88-211ENST00000575976 WSCD2Q2TBF2 565 aa8.56□□□□□ -1.04
NUP88-211ENST00000575976 SETMARQ53H47 684 aaPredicted RBP8.56□□□□□ -1.04
NUP88-211ENST00000575976 DUPD1Q68J44 220 aa8.56□□□□□ -1.04
NUP88-211ENST00000575976 HIBCHQ6NVY1 386 aaPredicted RBP8.56□□□□□ -1.04
NUP88-211ENST00000575976 LRRC8BQ6P9F7 803 aa8.56□□□□□ -1.04
NUP88-211ENST00000575976 Q6ZVL8 140 aa8.56□□□□□ -1.04
NUP88-211ENST00000575976 GLT6D1Q7Z4J2 308 aa8.56□□□□□ -1.04
NUP88-211ENST00000575976 TECPR1Q7Z6L1 1165 aa8.56□□□□□ -1.04
NUP88-211ENST00000575976 PCGF5Q86SE9 256 aa8.56□□□□□ -1.04
NUP88-211ENST00000575976 CAND1Q86VP6 1230 aaKnown RBP8.56□□□□□ -1.04
NUP88-211ENST00000575976 TP53I13Q8NBR0 393 aaPredicted RBP8.56□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 24.4 ms