RNA–Protein interactions for RNA: ENST00000568076.6

CLN3-230, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,968 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-230ENST00000568076 POLR3BQ9NW08 1133 aaPredicted RBP20.3■□□□□ 0.84
CLN3-230ENST00000568076 STOML2Q9UJZ1 356 aa20.3■□□□□ 0.84
CLN3-230ENST00000568076 PCDHGC4Q9Y5F7 938 aa20.3■□□□□ 0.84
CLN3-230ENST00000568076 SDHDO14521 159 aa20.29■□□□□ 0.84
CLN3-230ENST00000568076 CCNT2O60583 730 aaKnown RBP20.29■□□□□ 0.84
CLN3-230ENST00000568076 CRTAMO95727 393 aa20.29■□□□□ 0.84
CLN3-230ENST00000568076 C1RP00736 705 aa20.29■□□□□ 0.84
CLN3-230ENST00000568076 CD1DP15813 335 aa20.29■□□□□ 0.84
CLN3-230ENST00000568076 ZXDBP98169 803 aa20.29■□□□□ 0.84
CLN3-230ENST00000568076 RAB33AQ14088 237 aa20.29■□□□□ 0.84
CLN3-230ENST00000568076 VEPH1Q14D04 833 aa20.29■□□□□ 0.84
CLN3-230ENST00000568076 GLT6D1Q7Z4J2 308 aa20.29■□□□□ 0.84
CLN3-230ENST00000568076 DEFB107AQ8IZN7 70 aa20.29■□□□□ 0.84
CLN3-230ENST00000568076 OR4K2Q8NGD2 314 aa20.29■□□□□ 0.84
CLN3-230ENST00000568076 CATSPER2Q96P56 530 aa20.29■□□□□ 0.84
CLN3-230ENST00000568076 HERC2P3Q9BVR0 1158 aa20.29■□□□□ 0.84
CLN3-230ENST00000568076 RC3H2Q9HBD1 1191 aaKnown RBP20.29■□□□□ 0.84
CLN3-230ENST00000568076 ZNF334Q9HCZ1 680 aaPredicted RBP20.29■□□□□ 0.84
CLN3-230ENST00000568076 SAGE1Q9NXZ1 904 aa20.29■□□□□ 0.84
CLN3-230ENST00000568076 GTSE1Q9NYZ3 720 aa20.29■□□□□ 0.84
CLN3-230ENST00000568076 CDH22Q9UJ99 828 aa20.29■□□□□ 0.84
CLN3-230ENST00000568076 ARHGAP26Q9UNA1 814 aa20.29■□□□□ 0.84
CLN3-230ENST00000568076 GREM1O60565 184 aa20.28■□□□□ 0.84
CLN3-230ENST00000568076 PDE5AO76074 875 aa20.28■□□□□ 0.84
CLN3-230ENST00000568076 SNUPNO95149 360 aaKnown RBP20.28■□□□□ 0.84
CLN3-230ENST00000568076 MBL2P11226 248 aaPredicted RBP20.28■□□□□ 0.84
CLN3-230ENST00000568076 MZF1P28698 734 aaPredicted RBP20.28■□□□□ 0.84
CLN3-230ENST00000568076 PPARGP37231 505 aaPredicted RBP20.28■□□□□ 0.84
CLN3-230ENST00000568076 DEFB103AP81534 67 aa20.28■□□□□ 0.84
CLN3-230ENST00000568076 TAF11Q15544 211 aa20.28■□□□□ 0.84
CLN3-230ENST00000568076 C6orf163Q5TEZ5 329 aa20.28■□□□□ 0.84
CLN3-230ENST00000568076 FAM219BQ5XKK7 198 aa20.28■□□□□ 0.84
CLN3-230ENST00000568076 NXNQ6DKJ4 435 aa20.28■□□□□ 0.84
CLN3-230ENST00000568076 LPCAT1Q8NF37 534 aa20.28■□□□□ 0.84
CLN3-230ENST00000568076 ADAMTS19Q8TE59 1207 aa20.28■□□□□ 0.84
CLN3-230ENST00000568076 RSRC1Q96IZ7 334 aaKnown RBP20.28■□□□□ 0.84
CLN3-230ENST00000568076 MARK4Q96L34 752 aa20.28■□□□□ 0.84
CLN3-230ENST00000568076 AARSD1Q9BTE6 412 aaKnown RBP20.28■□□□□ 0.84
CLN3-230ENST00000568076 GSTO2Q9H4Y5 243 aa20.28■□□□□ 0.84
CLN3-230ENST00000568076 CORO1CQ9ULV4 474 aaPredicted RBP20.28■□□□□ 0.84
CLN3-230ENST00000568076 ARIH1Q9Y4X5 557 aaPredicted RBP20.28■□□□□ 0.84
CLN3-230ENST00000568076 RAI2Q9Y5P3 530 aa20.28■□□□□ 0.84
CLN3-230ENST00000568076 PRRG1O14668 218 aa20.28■□□□□ 0.84
CLN3-230ENST00000568076 ZNF37AP17032 561 aaPredicted RBP20.28■□□□□ 0.84
CLN3-230ENST00000568076 SMAD3P84022 425 aaKnown RBP20.28■□□□□ 0.84
CLN3-230ENST00000568076 PTPRRQ15256 657 aa20.28■□□□□ 0.84
CLN3-230ENST00000568076 TAF1AQ15573 450 aaPredicted RBP20.28■□□□□ 0.84
CLN3-230ENST00000568076 CUZD1Q86UP6 607 aa20.28■□□□□ 0.84
CLN3-230ENST00000568076 SNX32Q86XE0 403 aa20.28■□□□□ 0.84
CLN3-230ENST00000568076 SLC22A9Q8IVM8 553 aa20.28■□□□□ 0.84
CLN3-230ENST00000568076 FAM136AQ96C01 138 aa20.28■□□□□ 0.84
CLN3-230ENST00000568076 ANKRD27Q96NW4 1050 aa20.28■□□□□ 0.84
CLN3-230ENST00000568076 MED16Q9Y2X0 877 aa20.28■□□□□ 0.84
CLN3-230ENST00000568076 RGSL1A5PLK6 1076 aa20.27■□□□□ 0.84
CLN3-230ENST00000568076 UBFD1O14562 309 aaKnown RBP20.27■□□□□ 0.84
CLN3-230ENST00000568076 TBL1XO60907 577 aa20.27■□□□□ 0.84
CLN3-230ENST00000568076 TMCC1O94876 653 aa20.27■□□□□ 0.84
CLN3-230ENST00000568076 PSMA3P25788 255 aa20.27■□□□□ 0.84
CLN3-230ENST00000568076 PMLP29590 882 aa20.27■□□□□ 0.84
CLN3-230ENST00000568076 EPHB1P54762 984 aa20.27■□□□□ 0.84
CLN3-230ENST00000568076 SDCCAG8Q86SQ7 713 aaPredicted RBP20.27■□□□□ 0.84
CLN3-230ENST00000568076 HERC6Q8IVU3 1022 aa20.27■□□□□ 0.84
CLN3-230ENST00000568076 EFCAB3Q8N7B9 438 aa20.27■□□□□ 0.84
CLN3-230ENST00000568076 TRPC7Q9HCX4 862 aa20.27■□□□□ 0.84
CLN3-230ENST00000568076 NMRK1Q9NWW6 199 aa20.27■□□□□ 0.84
CLN3-230ENST00000568076 PCDH10Q9P2E7 1040 aa20.27■□□□□ 0.84
CLN3-230ENST00000568076 FIS1Q9Y3D6 152 aa20.27■□□□□ 0.84
CLN3-230ENST00000568076 TRPC5OSA6NMA1 111 aa20.26■□□□□ 0.83
CLN3-230ENST00000568076 H3BMM5 538 aa20.26■□□□□ 0.83
CLN3-230ENST00000568076 SKAP2O75563 359 aaPredicted RBP20.26■□□□□ 0.83
CLN3-230ENST00000568076 THRAP10827 490 aa20.26■□□□□ 0.83
CLN3-230ENST00000568076 ARSAP15289 507 aa20.26■□□□□ 0.83
CLN3-230ENST00000568076 HOXB8P17481 243 aaPredicted RBP20.26■□□□□ 0.83
CLN3-230ENST00000568076 IMPDH1P20839 514 aa20.26■□□□□ 0.83
CLN3-230ENST00000568076 CDC25CP30307 473 aa20.26■□□□□ 0.83
CLN3-230ENST00000568076 PPP3CCP48454 512 aa20.26■□□□□ 0.83
CLN3-230ENST00000568076 CDKN1CP49918 316 aaPredicted RBP20.26■□□□□ 0.83
CLN3-230ENST00000568076 TRAF2Q12933 501 aa20.26■□□□□ 0.83
CLN3-230ENST00000568076 SETMARQ53H47 684 aaPredicted RBP20.26■□□□□ 0.83
CLN3-230ENST00000568076 ZNF678Q5SXM1 525 aa20.26■□□□□ 0.83
CLN3-230ENST00000568076 CARNMT1Q8N4J0 409 aa20.26■□□□□ 0.83
CLN3-230ENST00000568076 DIS3LQ8TF46 1054 aaKnown RBP20.26■□□□□ 0.83
CLN3-230ENST00000568076 POPDC3Q9HBV1 291 aa20.26■□□□□ 0.83
CLN3-230ENST00000568076 INTS10Q9NVR2 710 aaKnown RBP20.26■□□□□ 0.83
CLN3-230ENST00000568076 INSL5Q9Y5Q6 135 aa20.26■□□□□ 0.83
CLN3-230ENST00000568076 COPG1Q9Y678 874 aaKnown RBP20.26■□□□□ 0.83
CLN3-230ENST00000568076 SLC22A2O15244 555 aa20.26■□□□□ 0.83
CLN3-230ENST00000568076 VHLP40337 213 aa20.26■□□□□ 0.83
CLN3-230ENST00000568076 C1QTNF8P60827 252 aa20.26■□□□□ 0.83
CLN3-230ENST00000568076 GALNT1Q10472 559 aaPredicted RBP20.26■□□□□ 0.83
CLN3-230ENST00000568076 TBL3Q12788 808 aaKnown RBP20.26■□□□□ 0.83
CLN3-230ENST00000568076 ILF2Q12905 390 aaKnown RBP20.26■□□□□ 0.83
CLN3-230ENST00000568076 AFTPHQ6ULP2 937 aa20.26■□□□□ 0.83
CLN3-230ENST00000568076 LRRC74BQ6ZQY2 392 aa20.26■□□□□ 0.83
CLN3-230ENST00000568076 TCEAL8Q8IYN2 117 aa20.26■□□□□ 0.83
CLN3-230ENST00000568076 ARL14EPQ8N8R7 260 aaPredicted RBP20.26■□□□□ 0.83
CLN3-230ENST00000568076 LPGAT1Q92604 370 aa20.26■□□□□ 0.83
CLN3-230ENST00000568076 L3HYPDHQ96EM0 354 aa20.26■□□□□ 0.83
CLN3-230ENST00000568076 NAF1Q96HR8 494 aaKnown RBP20.26■□□□□ 0.83
CLN3-230ENST00000568076 DDX50Q9BQ39 737 aaKnown RBP20.26■□□□□ 0.83
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms