RNA–Protein interactions for RNA: ENST00000565228.1

VPS35-206, Transcript of VPS35, retromer complex component, humanhuman

TSL 3

Gene VPS35, Length 487 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-206ENST00000565228 CBFA2T3O75081 653 aa9.23□□□□□ -0.93
VPS35-206ENST00000565228 USP12O75317 370 aa9.23□□□□□ -0.93
VPS35-206ENST00000565228 TM7SF2O76062 418 aa9.23□□□□□ -0.93
VPS35-206ENST00000565228 TJP3O95049 919 aa9.23□□□□□ -0.93
VPS35-206ENST00000565228 PTMAP06454 111 aaKnown RBP9.23□□□□□ -0.93
VPS35-206ENST00000565228 CELA2BP08218 269 aaPredicted RBP9.23□□□□□ -0.93
VPS35-206ENST00000565228 THEGLP0DJG4 465 aa9.23□□□□□ -0.93
VPS35-206ENST00000565228 STC1P52823 247 aa9.23□□□□□ -0.93
VPS35-206ENST00000565228 WNT3AP56704 352 aa9.23□□□□□ -0.93
VPS35-206ENST00000565228 CCDC173Q0VFZ6 552 aa9.23□□□□□ -0.93
VPS35-206ENST00000565228 GRM3Q14832 879 aa9.23□□□□□ -0.93
VPS35-206ENST00000565228 UAP1L1Q3KQV9 507 aa9.23□□□□□ -0.93
VPS35-206ENST00000565228 ODF2Q5BJF6 829 aa9.23□□□□□ -0.93
VPS35-206ENST00000565228 DENND2CQ68D51 928 aa9.23□□□□□ -0.93
VPS35-206ENST00000565228 DARS2Q6PI48 645 aaKnown RBP9.23□□□□□ -0.93
VPS35-206ENST00000565228 KYAT3Q6YP21 454 aaKnown RBP9.23□□□□□ -0.93
VPS35-206ENST00000565228 LYSMD3Q7Z3D4 306 aa9.23□□□□□ -0.93
VPS35-206ENST00000565228 SFTPA2Q8IWL1 248 aa9.23□□□□□ -0.93
VPS35-206ENST00000565228 RBFAQ8N0V3 343 aa9.23□□□□□ -0.93
VPS35-206ENST00000565228 TXLNBQ8N3L3 684 aa9.23□□□□□ -0.93
VPS35-206ENST00000565228 TTC30BQ8N4P2 665 aa9.23□□□□□ -0.93
VPS35-206ENST00000565228 C12orf50Q8NA57 414 aaPredicted RBP9.23□□□□□ -0.93
VPS35-206ENST00000565228 TRIM58Q8NG06 486 aa9.23□□□□□ -0.93
VPS35-206ENST00000565228 CXorf40AQ8TE69 158 aa9.23□□□□□ -0.93
VPS35-206ENST00000565228 NSMCE1Q8WV22 266 aa9.23□□□□□ -0.93
VPS35-206ENST00000565228 SCAMP4Q969E2 229 aa9.23□□□□□ -0.93
VPS35-206ENST00000565228 RTP4Q96DX8 246 aa9.23□□□□□ -0.93
VPS35-206ENST00000565228 SPATA13Q96N96 652 aa9.23□□□□□ -0.93
VPS35-206ENST00000565228 LYSMD1Q96S90 227 aa9.23□□□□□ -0.93
VPS35-206ENST00000565228 NUSAP1Q9BXS6 441 aaKnown RBP9.23□□□□□ -0.93
VPS35-206ENST00000565228 ABCG8Q9H221 673 aa9.23□□□□□ -0.93
VPS35-206ENST00000565228 GBA3Q9H227 469 aa9.23□□□□□ -0.93
VPS35-206ENST00000565228 TMEM9BQ9NQ34 198 aa9.23□□□□□ -0.93
VPS35-206ENST00000565228 KLHL8Q9P2G9 620 aaPredicted RBP9.23□□□□□ -0.93
VPS35-206ENST00000565228 CNOT6Q9ULM6 557 aaKnown RBP9.23□□□□□ -0.93
VPS35-206ENST00000565228 DMTF1Q9Y222 760 aa9.23□□□□□ -0.93
VPS35-206ENST00000565228 OR1A2Q9Y585 309 aa9.23□□□□□ -0.93
VPS35-206ENST00000565228 KCTD3Q9Y597 815 aa9.23□□□□□ -0.93
VPS35-206ENST00000565228 ST14Q9Y5Y6 855 aa9.23□□□□□ -0.93
VPS35-206ENST00000565228 HS3ST3A1Q9Y663 406 aa9.23□□□□□ -0.93
VPS35-206ENST00000565228 SMG1Q96Q15 3661 aaKnown RBP9.23□□□□□ -0.93
VPS35-206ENST00000565228 ZNF106Q9H2Y7 1883 aaKnown RBP9.23□□□□□ -0.93
VPS35-206ENST00000565228 MAP1BP46821 2468 aaKnown RBP9.23□□□□□ -0.93
VPS35-206ENST00000565228 COL27A1Q8IZC6 1860 aaPredicted RBP9.22□□□□□ -0.93
VPS35-206ENST00000565228 C5orf60A6NFR6 353 aa9.22□□□□□ -0.93
VPS35-206ENST00000565228 TMEM202A6NGA9 273 aa9.22□□□□□ -0.93
VPS35-206ENST00000565228 PDE2AO00408 941 aaPredicted RBP9.22□□□□□ -0.93
VPS35-206ENST00000565228 NEMP1O14524 444 aa9.22□□□□□ -0.93
VPS35-206ENST00000565228 GPR39O43194 453 aa9.22□□□□□ -0.93
VPS35-206ENST00000565228 SH3BP5O60239 455 aa9.22□□□□□ -0.93
VPS35-206ENST00000565228 CEP104O60308 925 aa9.22□□□□□ -0.93
VPS35-206ENST00000565228 SDC3O75056 442 aa9.22□□□□□ -0.93
VPS35-206ENST00000565228 FGGP02679 453 aa9.22□□□□□ -0.93
VPS35-206ENST00000565228 PCCBP05166 539 aa9.22□□□□□ -0.93
VPS35-206ENST00000565228 MYF5P13349 255 aa9.22□□□□□ -0.93
VPS35-206ENST00000565228 GNSP15586 552 aa9.22□□□□□ -0.93
VPS35-206ENST00000565228 GRIA1P42261 906 aa9.22□□□□□ -0.93
VPS35-206ENST00000565228 LMNB2Q03252 620 aa9.22□□□□□ -0.93
VPS35-206ENST00000565228 CDK18Q07002 472 aa9.22□□□□□ -0.93
VPS35-206ENST00000565228 ELP6Q0PNE2 266 aa9.22□□□□□ -0.93
VPS35-206ENST00000565228 SFSWAPQ12872 951 aaKnown RBP9.22□□□□□ -0.93
VPS35-206ENST00000565228 INPP5AQ14642 412 aa9.22□□□□□ -0.93
VPS35-206ENST00000565228 SLC14A2Q15849 920 aa9.22□□□□□ -0.93
VPS35-206ENST00000565228 SIRPB2Q5JXA9 342 aa9.22□□□□□ -0.93
VPS35-206ENST00000565228 RANBP10Q6VN20 620 aa9.22□□□□□ -0.93
VPS35-206ENST00000565228 BZW1Q7L1Q6 419 aaKnown RBP9.22□□□□□ -0.93
VPS35-206ENST00000565228 TMC3Q7Z5M5 1100 aa9.22□□□□□ -0.93
VPS35-206ENST00000565228 CDKL3Q8IVW4 592 aaPredicted RBP9.22□□□□□ -0.93
VPS35-206ENST00000565228 BBS5Q8N3I7 341 aa9.22□□□□□ -0.93
VPS35-206ENST00000565228 SLC25A45Q8N413 288 aa9.22□□□□□ -0.93
VPS35-206ENST00000565228 SLC25A41Q8N5S1 370 aa9.22□□□□□ -0.93
VPS35-206ENST00000565228 GPR26Q8NDV2 337 aa9.22□□□□□ -0.93
VPS35-206ENST00000565228 IPMKQ8NFU5 416 aa9.22□□□□□ -0.93
VPS35-206ENST00000565228 BAHD1Q8TBE0 780 aaPredicted RBP9.22□□□□□ -0.93
VPS35-206ENST00000565228 NETO1Q8TDF5 533 aa9.22□□□□□ -0.93
VPS35-206ENST00000565228 SAP25Q8TEE9 199 aa9.22□□□□□ -0.93
VPS35-206ENST00000565228 CCDC97Q96F63 343 aaPredicted RBP9.22□□□□□ -0.93
VPS35-206ENST00000565228 DTD2Q96FN9 168 aa9.22□□□□□ -0.93
VPS35-206ENST00000565228 CNTNAP3BQ96NU0 1288 aa9.22□□□□□ -0.93
VPS35-206ENST00000565228 OSBPL9Q96SU4 736 aa9.22□□□□□ -0.93
VPS35-206ENST00000565228 CNTNAP3Q9BZ76 1288 aa9.22□□□□□ -0.93
VPS35-206ENST00000565228 MRPL40Q9NQ50 206 aaKnown RBP9.22□□□□□ -0.93
VPS35-206ENST00000565228 PIH1D1Q9NWS0 290 aaKnown RBP9.22□□□□□ -0.93
VPS35-206ENST00000565228 SUSD2Q9UGT4 822 aa9.22□□□□□ -0.93
VPS35-206ENST00000565228 SHOC2Q9UQ13 582 aa9.22□□□□□ -0.93
VPS35-206ENST00000565228 ZFC3H1O60293 1989 aaKnown RBP9.21□□□□□ -0.93
VPS35-206ENST00000565228 LY6G6EA0A0G2JKS1 128 aa9.21□□□□□ -0.94
VPS35-206ENST00000565228 SPTY2D1-AS1A0A0U1RR47 76 aa9.21□□□□□ -0.94
VPS35-206ENST00000565228 TCRBV7S3A2A0A539 114 aa9.21□□□□□ -0.94
VPS35-206ENST00000565228 CFAP69A5D8W1 941 aa9.21□□□□□ -0.94
VPS35-206ENST00000565228 FADS2P1A8MWK0 482 aa9.21□□□□□ -0.94
VPS35-206ENST00000565228 PRR5-ARHGAP8B1AHC4 643 aa9.21□□□□□ -0.94
VPS35-206ENST00000565228 GAPDHSO14556 408 aaPredicted RBP9.21□□□□□ -0.94
VPS35-206ENST00000565228 BUD23O43709 281 aaKnown RBP9.21□□□□□ -0.94
VPS35-206ENST00000565228 LZTS3O60299 673 aaPredicted RBP9.21□□□□□ -0.94
VPS35-206ENST00000565228 GCATO75600 419 aa9.21□□□□□ -0.94
VPS35-206ENST00000565228 NDST3O95803 873 aa9.21□□□□□ -0.94
VPS35-206ENST00000565228 TOP3BO95985 862 aaKnown RBP9.21□□□□□ -0.94
VPS35-206ENST00000565228 ELFN1P0C7U0 828 aa9.21□□□□□ -0.94
VPS35-206ENST00000565228 XPAP23025 273 aaPredicted RBP9.21□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 24.6 ms