RNA–Protein interactions for RNA: ENST00000564096.1

CLK3-214, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 805 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-214ENST00000564096 SIGLEC14Q08ET2 396 aa12.83□□□□□ -0.36
CLK3-214ENST00000564096 ILF2Q12905 390 aaKnown RBP12.83□□□□□ -0.36
CLK3-214ENST00000564096 MSLNQ13421 630 aaPredicted RBP12.83□□□□□ -0.36
CLK3-214ENST00000564096 CRY1Q16526 586 aa12.83□□□□□ -0.36
CLK3-214ENST00000564096 AARS2Q5JTZ9 985 aaKnown RBP12.83□□□□□ -0.36
CLK3-214ENST00000564096 KIAA1211LQ6NV74 962 aa12.83□□□□□ -0.36
CLK3-214ENST00000564096 KIAA1324Q6UXG2 1013 aaKnown RBP12.83□□□□□ -0.36
CLK3-214ENST00000564096 Q6ZS52 159 aa12.83□□□□□ -0.36
CLK3-214ENST00000564096 SYT13Q7L8C5 426 aa12.83□□□□□ -0.36
CLK3-214ENST00000564096 TMPRSS6Q8IU80 811 aa12.83□□□□□ -0.36
CLK3-214ENST00000564096 CTAGE3PQ8IX95 158 aa12.83□□□□□ -0.36
CLK3-214ENST00000564096 RAVER1Q8IY67 606 aaKnown RBP12.83□□□□□ -0.36
CLK3-214ENST00000564096 RIBC1Q8N443 379 aaPredicted RBP12.83□□□□□ -0.36
CLK3-214ENST00000564096 TTC30BQ8N4P2 665 aa12.83□□□□□ -0.36
CLK3-214ENST00000564096 MDGA1Q8NFP4 955 aa12.83□□□□□ -0.36
CLK3-214ENST00000564096 TSTD1Q8NFU3 115 aa12.83□□□□□ -0.36
CLK3-214ENST00000564096 PJA1Q8NG27 643 aa12.83□□□□□ -0.36
CLK3-214ENST00000564096 UHMK1Q8TAS1 419 aaKnown RBP12.83□□□□□ -0.36
CLK3-214ENST00000564096 CXorf40AQ8TE69 158 aa12.83□□□□□ -0.36
CLK3-214ENST00000564096 VOPP1Q96AW1 172 aa12.83□□□□□ -0.36
CLK3-214ENST00000564096 SIPA1Q96FS4 1042 aa12.83□□□□□ -0.36
CLK3-214ENST00000564096 DNAJC1Q96KC8 554 aaKnown RBP12.83□□□□□ -0.36
CLK3-214ENST00000564096 FOXQ1Q9C009 403 aa12.83□□□□□ -0.36
CLK3-214ENST00000564096 CDH19Q9H159 772 aa12.83□□□□□ -0.36
CLK3-214ENST00000564096 EPB41L4BQ9H329 900 aa12.83□□□□□ -0.36
CLK3-214ENST00000564096 NLE1Q9NVX2 485 aaPredicted RBP12.83□□□□□ -0.36
CLK3-214ENST00000564096 BCCIPQ9P287 314 aaKnown RBP eCLIP12.83□□□□□ -0.36
CLK3-214ENST00000564096 FZD4Q9ULV1 537 aa12.83□□□□□ -0.36
CLK3-214ENST00000564096 NCKAP1Q9Y2A7 1128 aa12.83□□□□□ -0.36
CLK3-214ENST00000564096 RGSL1A5PLK6 1076 aa12.82□□□□□ -0.36
CLK3-214ENST00000564096 AP1G1O43747 822 aa12.82□□□□□ -0.36
CLK3-214ENST00000564096 RNASEH2AO75792 299 aaKnown RBP12.82□□□□□ -0.36
CLK3-214ENST00000564096 VAPBO95292 243 aa12.82□□□□□ -0.36
CLK3-214ENST00000564096 INHBAP08476 426 aa12.82□□□□□ -0.36
CLK3-214ENST00000564096 TIMP2P16035 220 aa12.82□□□□□ -0.36
CLK3-214ENST00000564096 COL9A1P20849 921 aa12.82□□□□□ -0.36
CLK3-214ENST00000564096 P2RY2P41231 377 aa12.82□□□□□ -0.36
CLK3-214ENST00000564096 RPS9P46781 194 aaKnown RBP12.82□□□□□ -0.36
CLK3-214ENST00000564096 PTPN5P54829 565 aa12.82□□□□□ -0.36
CLK3-214ENST00000564096 CNTN1Q12860 1018 aa12.82□□□□□ -0.36
CLK3-214ENST00000564096 CNGA3Q16281 694 aa12.82□□□□□ -0.36
CLK3-214ENST00000564096 KRT71Q3SY84 523 aa12.82□□□□□ -0.36
CLK3-214ENST00000564096 KBTBD12Q3ZCT8 623 aa12.82□□□□□ -0.36
CLK3-214ENST00000564096 LRRC73Q5JTD7 316 aa12.82□□□□□ -0.36
CLK3-214ENST00000564096 MRNIPQ6NTE8 343 aa12.82□□□□□ -0.36
CLK3-214ENST00000564096 ESRP1Q6NXG1 681 aaKnown RBP12.82□□□□□ -0.36
CLK3-214ENST00000564096 CRTC1Q6UUV9 634 aa12.82□□□□□ -0.36
CLK3-214ENST00000564096 CES3Q6UWW8 571 aa12.82□□□□□ -0.36
CLK3-214ENST00000564096 USP30Q70CQ3 517 aa12.82□□□□□ -0.36
CLK3-214ENST00000564096 LRRC6Q86X45 466 aa12.82□□□□□ -0.36
CLK3-214ENST00000564096 ZNF687Q8N1G0 1237 aa12.82□□□□□ -0.36
CLK3-214ENST00000564096 HDDC3Q8N4P3 179 aa12.82□□□□□ -0.36
CLK3-214ENST00000564096 OR4K2Q8NGD2 314 aa12.82□□□□□ -0.36
CLK3-214ENST00000564096 OR13J1Q8NGT2 312 aa12.82□□□□□ -0.36
CLK3-214ENST00000564096 OR6P1Q8NGX9 317 aa12.82□□□□□ -0.36
CLK3-214ENST00000564096 SCG3Q8WXD2 468 aaKnown RBP12.82□□□□□ -0.36
CLK3-214ENST00000564096 ERLEC1Q96DZ1 483 aa12.82□□□□□ -0.36
CLK3-214ENST00000564096 ZIM3Q96PE6 472 aa12.82□□□□□ -0.36
CLK3-214ENST00000564096 TRIM56Q9BRZ2 755 aaKnown RBP12.82□□□□□ -0.36
CLK3-214ENST00000564096 ROPN1BQ9BZX4 212 aaPredicted RBP12.82□□□□□ -0.36
CLK3-214ENST00000564096 MKRN2Q9H000 416 aaKnown RBP12.82□□□□□ -0.36
CLK3-214ENST00000564096 STMN4Q9H169 189 aaPredicted RBP12.82□□□□□ -0.36
CLK3-214ENST00000564096 ROPN1Q9HAT0 212 aaPredicted RBP12.82□□□□□ -0.36
CLK3-214ENST00000564096 MOCS1Q9NZB8 636 aa12.82□□□□□ -0.36
CLK3-214ENST00000564096 PSMC3IPQ9P2W1 217 aaPredicted RBP12.82□□□□□ -0.36
CLK3-214ENST00000564096 SLC24A2Q9UI40 661 aa12.82□□□□□ -0.36
CLK3-214ENST00000564096 APPL1Q9UKG1 709 aa12.82□□□□□ -0.36
CLK3-214ENST00000564096 CKAP5Q14008 2032 aa12.81□□□□□ -0.36
CLK3-214ENST00000564096 A0A1W2PP55 124 aa12.81□□□□□ -0.36
CLK3-214ENST00000564096 ANTXRLA6NF34 631 aa12.81□□□□□ -0.36
CLK3-214ENST00000564096 FAM159BA6NKW6 160 aa12.81□□□□□ -0.36
CLK3-214ENST00000564096 H7C0S8 307 aa12.81□□□□□ -0.36
CLK3-214ENST00000564096 MAP2K7O14733 419 aa12.81□□□□□ -0.36
CLK3-214ENST00000564096 RASGRF2O14827 1237 aa12.81□□□□□ -0.36
CLK3-214ENST00000564096 AURKAO14965 403 aa12.81□□□□□ -0.36
CLK3-214ENST00000564096 AREL1O15033 823 aa12.81□□□□□ -0.36
CLK3-214ENST00000564096 TSPAN6O43657 245 aa12.81□□□□□ -0.36
CLK3-214ENST00000564096 OPA1O60313 960 aa12.81□□□□□ -0.36
CLK3-214ENST00000564096 CDH16O75309 829 aa12.81□□□□□ -0.36
CLK3-214ENST00000564096 TCEA3O75764 348 aa12.81□□□□□ -0.36
CLK3-214ENST00000564096 CLDN7O95471 211 aa12.81□□□□□ -0.36
CLK3-214ENST00000564096 MYZAPP0CAP1 466 aa12.81□□□□□ -0.36
CLK3-214ENST00000564096 NDUFV2P19404 249 aa12.81□□□□□ -0.36
CLK3-214ENST00000564096 ITGALP20701 1170 aa12.81□□□□□ -0.36
CLK3-214ENST00000564096 LHCGRP22888 699 aa12.81□□□□□ -0.36
CLK3-214ENST00000564096 ATP5DP30049 168 aa12.81□□□□□ -0.36
CLK3-214ENST00000564096 MSH2P43246 934 aa12.81□□□□□ -0.36
CLK3-214ENST00000564096 STC1P52823 247 aa12.81□□□□□ -0.36
CLK3-214ENST00000564096 DCDC1P59894 354 aa12.81□□□□□ -0.36
CLK3-214ENST00000564096 TMPRSS15P98073 1019 aa12.81□□□□□ -0.36
CLK3-214ENST00000564096 ZNF844Q08AG5 666 aa12.81□□□□□ -0.36
CLK3-214ENST00000564096 HSP90B2PQ58FF3 399 aa12.81□□□□□ -0.36
CLK3-214ENST00000564096 CEP85LQ5SZL2 805 aa12.81□□□□□ -0.36
CLK3-214ENST00000564096 PIP5KL1Q5T9C9 394 aa12.81□□□□□ -0.36
CLK3-214ENST00000564096 RNF187Q5TA31 235 aaPredicted RBP12.81□□□□□ -0.36
CLK3-214ENST00000564096 AGBL4Q5VU57 503 aa12.81□□□□□ -0.36
CLK3-214ENST00000564096 ZNF470Q6ECI4 717 aa12.81□□□□□ -0.36
CLK3-214ENST00000564096 TRMT10BQ6PF06 316 aaKnown RBP12.81□□□□□ -0.36
CLK3-214ENST00000564096 TRIM67Q6ZTA4 783 aa12.81□□□□□ -0.36
CLK3-214ENST00000564096 KIAA0408Q6ZU52 694 aa12.81□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 52.9 ms