RNA–Protein interactions for RNA: ENST00000557005.1

SYNE2-223, Transcript of spectrin repeat containing nuclear envelope protein 2, human

TSL 2

Gene SYNE2, Length 5,804 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SYNE2-223	ENST00000557005	ILDR2	Q71H61	639 aa		4.99	□□□□□ -1.61
SYNE2-223	ENST00000557005	CCDC80	Q76M96	950 aa		4.99	□□□□□ -1.61
SYNE2-223	ENST00000557005	NECAB2	Q7Z6G3	386 aa		4.99	□□□□□ -1.61
SYNE2-223	ENST00000557005	SFRP1	Q8N474	314 aa		4.99	□□□□□ -1.61
SYNE2-223	ENST00000557005	OR4A15	Q8NGL6	344 aa		4.99	□□□□□ -1.61
SYNE2-223	ENST00000557005	METTL6	Q8TCB7	284 aa		4.99	□□□□□ -1.61
SYNE2-223	ENST00000557005	PNPT1	Q8TCS8	783 aa	Known RBP	4.99	□□□□□ -1.61
SYNE2-223	ENST00000557005	CERK	Q8TCT0	537 aa		4.99	□□□□□ -1.61
SYNE2-223	ENST00000557005	ELMO1	Q92556	727 aa		4.99	□□□□□ -1.61
SYNE2-223	ENST00000557005	NELL1	Q92832	810 aa		4.99	□□□□□ -1.61
SYNE2-223	ENST00000557005	SH3KBP1	Q96B97	665 aa		4.99	□□□□□ -1.61
SYNE2-223	ENST00000557005	KLHL32	Q96NJ5	620 aa		4.99	□□□□□ -1.61
SYNE2-223	ENST00000557005	YME1L1	Q96TA2	773 aa		4.99	□□□□□ -1.61
SYNE2-223	ENST00000557005	GOLGA2P5	Q9HBQ8	144 aa		4.99	□□□□□ -1.61
SYNE2-223	ENST00000557005	SYTL2	Q9HCH5	934 aa		4.99	□□□□□ -1.61
SYNE2-223	ENST00000557005	LMCD1	Q9NZU5	365 aa		4.99	□□□□□ -1.61
SYNE2-223	ENST00000557005	PDP1	Q9P0J1	537 aa	Predicted RBP	4.99	□□□□□ -1.61
SYNE2-223	ENST00000557005	SFMBT1	Q9UHJ3	866 aa		4.99	□□□□□ -1.61
SYNE2-223	ENST00000557005	PCDHGB4	Q9UN71	923 aa		4.99	□□□□□ -1.61
SYNE2-223	ENST00000557005	TBC1D30	Q9Y2I9	924 aa		4.99	□□□□□ -1.61
SYNE2-223	ENST00000557005	WBP11	Q9Y2W2	641 aa	Known RBP	4.99	□□□□□ -1.61
SYNE2-223	ENST00000557005	SLC12A8	A0AV02	714 aa		4.99	□□□□□ -1.61
SYNE2-223	ENST00000557005	CBX4	O00257	560 aa		4.99	□□□□□ -1.61
SYNE2-223	ENST00000557005	NDUFS2	O75306	463 aa		4.99	□□□□□ -1.61
SYNE2-223	ENST00000557005	ZBTB7A	O95365	584 aa		4.99	□□□□□ -1.61
SYNE2-223	ENST00000557005	LYPLA2	O95372	231 aa		4.99	□□□□□ -1.61
SYNE2-223	ENST00000557005	COX7A2	P14406	83 aa		4.99	□□□□□ -1.61
SYNE2-223	ENST00000557005	HDC	P19113	662 aa		4.99	□□□□□ -1.61
SYNE2-223	ENST00000557005	IVD	P26440	423 aa		4.99	□□□□□ -1.61
SYNE2-223	ENST00000557005	EPHX2	P34913	555 aa		4.99	□□□□□ -1.61
SYNE2-223	ENST00000557005	NOS2	P35228	1153 aa		4.99	□□□□□ -1.61
SYNE2-223	ENST00000557005	PIK3CG	P48736	1102 aa		4.99	□□□□□ -1.61
SYNE2-223	ENST00000557005	LHX1	P48742	406 aa		4.99	□□□□□ -1.61
SYNE2-223	ENST00000557005	TPTE	P56180	551 aa		4.99	□□□□□ -1.61
SYNE2-223	ENST00000557005	MTPN	P58546	118 aa		4.99	□□□□□ -1.61
SYNE2-223	ENST00000557005	PHC1	P78364	1004 aa		4.99	□□□□□ -1.61
SYNE2-223	ENST00000557005	TRAP1	Q12931	704 aa	Known RBP	4.99	□□□□□ -1.61
SYNE2-223	ENST00000557005	AP5B1	Q2VPB7	878 aa		4.99	□□□□□ -1.61
SYNE2-223	ENST00000557005	PLEKHG4	Q58EX7	1191 aa		4.99	□□□□□ -1.61
SYNE2-223	ENST00000557005	SDHAF4	Q5VUM1	108 aa		4.99	□□□□□ -1.61
SYNE2-223	ENST00000557005	TMEM214	Q6NUQ4	689 aa	Known RBP	4.99	□□□□□ -1.61
SYNE2-223	ENST00000557005	NEPRO	Q6NW34	567 aa		4.99	□□□□□ -1.61
SYNE2-223	ENST00000557005	SPATA19	Q7Z5L4	167 aa		4.99	□□□□□ -1.61
SYNE2-223	ENST00000557005	NT5DC4	Q86YG4	428 aa		4.99	□□□□□ -1.61
SYNE2-223	ENST00000557005	CENPN	Q96H22	339 aa	Predicted RBP	4.99	□□□□□ -1.61
SYNE2-223	ENST00000557005	GATA5	Q9BWX5	397 aa	Predicted RBP	4.99	□□□□□ -1.61
SYNE2-223	ENST00000557005	SLC2A6	Q9UGQ3	507 aa		4.99	□□□□□ -1.61
SYNE2-223	ENST00000557005	CEPT1	Q9Y6K0	416 aa		4.99	□□□□□ -1.61
SYNE2-223	ENST00000557005	KRT87P	A6NCN2	255 aa		4.98	□□□□□ -1.61
SYNE2-223	ENST00000557005		A8MV72	311 aa	Predicted RBP	4.98	□□□□□ -1.61
SYNE2-223	ENST00000557005	CAPN14	A8MX76	684 aa		4.98	□□□□□ -1.61
SYNE2-223	ENST00000557005	CCNK	O75909	580 aa		4.98	□□□□□ -1.61
SYNE2-223	ENST00000557005	AP2A1	O95782	977 aa		4.98	□□□□□ -1.61
SYNE2-223	ENST00000557005	NPR3	P17342	541 aa		4.98	□□□□□ -1.61
SYNE2-223	ENST00000557005	MSH3	P20585	1137 aa		4.98	□□□□□ -1.61
SYNE2-223	ENST00000557005	ATP6V1E1	P36543	226 aa		4.98	□□□□□ -1.61
SYNE2-223	ENST00000557005	CRAT	P43155	626 aa		4.98	□□□□□ -1.61
SYNE2-223	ENST00000557005	MAP2K4	P45985	399 aa		4.98	□□□□□ -1.61
SYNE2-223	ENST00000557005	GLUD2	P49448	558 aa		4.98	□□□□□ -1.61
SYNE2-223	ENST00000557005	CSNK2B	P67870	215 aa		4.98	□□□□□ -1.61
SYNE2-223	ENST00000557005	MYBPC1	Q00872	1141 aa		4.98	□□□□□ -1.61
SYNE2-223	ENST00000557005	MAD2L1	Q13257	205 aa	Predicted RBP	4.98	□□□□□ -1.61
SYNE2-223	ENST00000557005	ZNF423	Q2M1K9	1284 aa		4.98	□□□□□ -1.61
SYNE2-223	ENST00000557005	SLC25A52	Q3SY17	297 aa		4.98	□□□□□ -1.61
SYNE2-223	ENST00000557005	SLC39A12	Q504Y0	691 aa		4.98	□□□□□ -1.61
SYNE2-223	ENST00000557005	KIAA1841	Q6NSI8	718 aa		4.98	□□□□□ -1.61
SYNE2-223	ENST00000557005	SLC27A1	Q6PCB7	646 aa		4.98	□□□□□ -1.61
SYNE2-223	ENST00000557005	GPRIN3	Q6ZVF9	776 aa		4.98	□□□□□ -1.61
SYNE2-223	ENST00000557005	FSTL5	Q8N475	847 aa	Predicted RBP	4.98	□□□□□ -1.61
SYNE2-223	ENST00000557005	ZFP28	Q8NHY6	868 aa		4.98	□□□□□ -1.61
SYNE2-223	ENST00000557005	HM13	Q8TCT9	377 aa		4.98	□□□□□ -1.61
SYNE2-223	ENST00000557005	GPR152	Q8TDT2	470 aa		4.98	□□□□□ -1.61
SYNE2-223	ENST00000557005	LPP	Q93052	612 aa		4.98	□□□□□ -1.61
SYNE2-223	ENST00000557005	GLT1D1	Q96MS3	346 aa		4.98	□□□□□ -1.61
SYNE2-223	ENST00000557005	KLHL5	Q96PQ7	755 aa		4.98	□□□□□ -1.61
SYNE2-223	ENST00000557005	CDK15	Q96Q40	435 aa		4.98	□□□□□ -1.61
SYNE2-223	ENST00000557005	CITED4	Q96RK1	184 aa		4.98	□□□□□ -1.61
SYNE2-223	ENST00000557005	HAPLN2	Q9GZV7	340 aa		4.98	□□□□□ -1.61
SYNE2-223	ENST00000557005	GPBP1L1	Q9HC44	474 aa	Predicted RBP	4.98	□□□□□ -1.61
SYNE2-223	ENST00000557005	STMN3	Q9NZ72	180 aa		4.98	□□□□□ -1.61
SYNE2-223	ENST00000557005	ARHGAP28	Q9P2N2	729 aa		4.98	□□□□□ -1.61
SYNE2-223	ENST00000557005	CYTH4	Q9UIA0	394 aa		4.98	□□□□□ -1.61
SYNE2-223	ENST00000557005	SH3BP1	Q9Y3L3	701 aa		4.98	□□□□□ -1.61
SYNE2-223	ENST00000557005	MAFB	Q9Y5Q3	323 aa	Predicted RBP	4.98	□□□□□ -1.61
SYNE2-223	ENST00000557005	PSAT1	Q9Y617	370 aa		4.98	□□□□□ -1.61
SYNE2-223	ENST00000557005	ARL5A	Q9Y689	179 aa		4.98	□□□□□ -1.61
SYNE2-223	ENST00000557005	SCN7A	Q01118	1682 aa		4.98	□□□□□ -1.61
SYNE2-223	ENST00000557005	CACNA1S	Q13698	1873 aa		4.98	□□□□□ -1.61
SYNE2-223	ENST00000557005	NPHS1	O60500	1241 aa		4.98	□□□□□ -1.61
SYNE2-223	ENST00000557005	SERPINA1	P01009	418 aa		4.98	□□□□□ -1.61
SYNE2-223	ENST00000557005	LGALS2	P05162	132 aa		4.98	□□□□□ -1.61
SYNE2-223	ENST00000557005	CKMT2	P17540	419 aa		4.98	□□□□□ -1.61
SYNE2-223	ENST00000557005	CES1	P23141	567 aa		4.98	□□□□□ -1.61
SYNE2-223	ENST00000557005	IGFBP5	P24593	272 aa		4.98	□□□□□ -1.61
SYNE2-223	ENST00000557005	RPL10	P27635	214 aa	Known RBP	4.98	□□□□□ -1.61
SYNE2-223	ENST00000557005	TTK	P33981	857 aa		4.98	□□□□□ -1.61
SYNE2-223	ENST00000557005	MATK	P42679	507 aa		4.98	□□□□□ -1.61
SYNE2-223	ENST00000557005	TBX4	P57082	545 aa		4.98	□□□□□ -1.61
SYNE2-223	ENST00000557005	VBP1	P61758	197 aa		4.98	□□□□□ -1.61
SYNE2-223	ENST00000557005	CDKL1	Q00532	357 aa		4.98	□□□□□ -1.61

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