RNA–Protein interactions for RNA: ENST00000556256.1

SCFD1-218, Transcript of sec1 family domain containing 1, humanhuman

TSL 2

Gene SCFD1, Length 428 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-218ENST00000556256 IRX1P78414 480 aaPredicted RBP3.18□□□□□ -1.9
SCFD1-218ENST00000556256 SLC12A1Q13621 1099 aa3.18□□□□□ -1.9
SCFD1-218ENST00000556256 EFNB3Q15768 340 aa3.18□□□□□ -1.9
SCFD1-218ENST00000556256 ZNF239Q16600 458 aaKnown RBP3.18□□□□□ -1.9
SCFD1-218ENST00000556256 CBWD5Q5RIA9 395 aa3.18□□□□□ -1.9
SCFD1-218ENST00000556256 SLC35E4Q6ICL7 350 aa3.18□□□□□ -1.9
SCFD1-218ENST00000556256 CCDC70Q6NSX1 233 aa3.18□□□□□ -1.9
SCFD1-218ENST00000556256 NOTCH2NLQ7Z3S9 236 aa3.18□□□□□ -1.9
SCFD1-218ENST00000556256 ODF3L1Q8IXM7 274 aa3.18□□□□□ -1.9
SCFD1-218ENST00000556256 HTRA1Q92743 480 aa3.18□□□□□ -1.9
SCFD1-218ENST00000556256 PPM1MQ96MI6 270 aa3.18□□□□□ -1.9
SCFD1-218ENST00000556256 EIF2AK1Q9BQI3 630 aaKnown RBP3.18□□□□□ -1.9
SCFD1-218ENST00000556256 MAF1Q9H063 256 aa3.18□□□□□ -1.9
SCFD1-218ENST00000556256 ATP8A2Q9NTI2 1148 aa3.18□□□□□ -1.9
SCFD1-218ENST00000556256 CD207Q9UJ71 328 aa3.18□□□□□ -1.9
SCFD1-218ENST00000556256 SLC13A4Q9UKG4 626 aa3.18□□□□□ -1.9
SCFD1-218ENST00000556256 RALYQ9UKM9 306 aaKnown RBP3.18□□□□□ -1.9
SCFD1-218ENST00000556256 ATXN2Q99700 1313 aaKnown RBP3.18□□□□□ -1.9
SCFD1-218ENST00000556256 SLC25A17O43808 307 aa3.17□□□□□ -1.9
SCFD1-218ENST00000556256 DHX16O60231 1041 aaKnown RBP3.17□□□□□ -1.9
SCFD1-218ENST00000556256 NDUFS7O75251 213 aa3.17□□□□□ -1.9
SCFD1-218ENST00000556256 PAX1P15863 534 aa3.17□□□□□ -1.9
SCFD1-218ENST00000556256 PTPN9P43378 593 aa3.17□□□□□ -1.9
SCFD1-218ENST00000556256 MTNR1AP48039 350 aa3.17□□□□□ -1.9
SCFD1-218ENST00000556256 TUBP50607 506 aa3.17□□□□□ -1.9
SCFD1-218ENST00000556256 KHDRBS1Q07666 443 aaKnown RBP eCLIP3.17□□□□□ -1.9
SCFD1-218ENST00000556256 TRPC3Q13507 836 aa3.17□□□□□ -1.9
SCFD1-218ENST00000556256 RPE65Q16518 533 aa3.17□□□□□ -1.9
SCFD1-218ENST00000556256 ME3Q16798 604 aa3.17□□□□□ -1.9
SCFD1-218ENST00000556256 WDR45BQ5MNZ6 344 aa3.17□□□□□ -1.9
SCFD1-218ENST00000556256 JAKMIP3Q5VZ66 844 aa3.17□□□□□ -1.9
SCFD1-218ENST00000556256 ATG16L1Q676U5 607 aa3.17□□□□□ -1.9
SCFD1-218ENST00000556256 DENND1BQ6P3S1 775 aa3.17□□□□□ -1.9
SCFD1-218ENST00000556256 CCNI2Q6ZMN8 369 aaPredicted RBP3.17□□□□□ -1.9
SCFD1-218ENST00000556256 SYNE3Q6ZMZ3 975 aa3.17□□□□□ -1.9
SCFD1-218ENST00000556256 SFTPA2Q8IWL1 248 aa3.17□□□□□ -1.9
SCFD1-218ENST00000556256 ESX1Q8N693 406 aa3.17□□□□□ -1.9
SCFD1-218ENST00000556256 NAXEQ8NCW5 288 aa3.17□□□□□ -1.9
SCFD1-218ENST00000556256 KLHDC9Q8NEP7 349 aa3.17□□□□□ -1.9
SCFD1-218ENST00000556256 BBS10Q8TAM1 723 aa3.17□□□□□ -1.9
SCFD1-218ENST00000556256 MASTLQ96GX5 879 aa3.17□□□□□ -1.9
SCFD1-218ENST00000556256 FSD1Q9BTV5 496 aa3.17□□□□□ -1.9
SCFD1-218ENST00000556256 CDK19Q9BWU1 502 aa3.17□□□□□ -1.9
SCFD1-218ENST00000556256 PHF7Q9BWX1 381 aaPredicted RBP3.17□□□□□ -1.9
SCFD1-218ENST00000556256 C1RLQ9NZP8 487 aa3.17□□□□□ -1.9
SCFD1-218ENST00000556256 IFT80Q9P2H3 777 aaPredicted RBP3.17□□□□□ -1.9
SCFD1-218ENST00000556256 TMEM98Q9Y2Y6 226 aa3.17□□□□□ -1.9
SCFD1-218ENST00000556256 PDS5AQ29RF7 1337 aaKnown RBP3.17□□□□□ -1.9
SCFD1-218ENST00000556256 FAM90A7PA6NKC0 464 aa3.16□□□□□ -1.9
SCFD1-218ENST00000556256 FAM90A22PA8MWA6 464 aa3.16□□□□□ -1.9
SCFD1-218ENST00000556256 FAM90A12PA8MX19 464 aa3.16□□□□□ -1.9
SCFD1-218ENST00000556256 FAM90A23PA8MXZ1 464 aa3.16□□□□□ -1.9
SCFD1-218ENST00000556256 BLOC1S5-TXNDC5H3BN57 136 aa3.16□□□□□ -1.9
SCFD1-218ENST00000556256 SOCS6O14544 535 aa3.16□□□□□ -1.9
SCFD1-218ENST00000556256 PCDH7O60245 1069 aa3.16□□□□□ -1.9
SCFD1-218ENST00000556256 METTL18O95568 372 aa3.16□□□□□ -1.9
SCFD1-218ENST00000556256 TFPIP10646 304 aa3.16□□□□□ -1.9
SCFD1-218ENST00000556256 TTKP33981 857 aa3.16□□□□□ -1.9
SCFD1-218ENST00000556256 MVDP53602 400 aa3.16□□□□□ -1.9
SCFD1-218ENST00000556256 TBX2Q13207 712 aaPredicted RBP3.16□□□□□ -1.9
SCFD1-218ENST00000556256 WDR73Q6P4I2 378 aa3.16□□□□□ -1.9
SCFD1-218ENST00000556256 GFRALQ6UXV0 394 aa3.16□□□□□ -1.9
SCFD1-218ENST00000556256 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP3.16□□□□□ -1.9
SCFD1-218ENST00000556256 LSM14AQ8ND56 463 aaKnown RBP3.16□□□□□ -1.9
SCFD1-218ENST00000556256 ZMIZ2Q8NF64 920 aa3.16□□□□□ -1.9
SCFD1-218ENST00000556256 RBM17Q96I25 401 aaKnown RBP3.16□□□□□ -1.9
SCFD1-218ENST00000556256 ZNF583Q96ND8 569 aa3.16□□□□□ -1.9
SCFD1-218ENST00000556256 AGXT2Q9BYV1 514 aa3.16□□□□□ -1.9
SCFD1-218ENST00000556256 GPR63Q9BZJ6 419 aa3.16□□□□□ -1.9
SCFD1-218ENST00000556256 PLEKHA5Q9HAU0 1116 aa3.16□□□□□ -1.9
SCFD1-218ENST00000556256 UBN1Q9NPG3 1134 aa3.16□□□□□ -1.9
SCFD1-218ENST00000556256 TLR8Q9NR97 1041 aaKnown RBP3.16□□□□□ -1.9
SCFD1-218ENST00000556256 THAP1Q9NVV9 213 aa3.16□□□□□ -1.9
SCFD1-218ENST00000556256 CDC14AQ9UNH5 594 aa3.16□□□□□ -1.9
SCFD1-218ENST00000556256 GDAQ9Y2T3 454 aa3.16□□□□□ -1.9
SCFD1-218ENST00000556256 J3KRW8 73 aa3.15□□□□□ -1.91
SCFD1-218ENST00000556256 NR5A2O00482 541 aa3.15□□□□□ -1.91
SCFD1-218ENST00000556256 KLK10O43240 276 aa3.15□□□□□ -1.91
SCFD1-218ENST00000556256 TNNT1P13805 278 aa3.15□□□□□ -1.91
SCFD1-218ENST00000556256 PSMC2P35998 433 aaKnown RBP3.15□□□□□ -1.91
SCFD1-218ENST00000556256 CLK1P49759 484 aaKnown RBP3.15□□□□□ -1.91
SCFD1-218ENST00000556256 NR1H2P55055 460 aa3.15□□□□□ -1.91
SCFD1-218ENST00000556256 GNB1P62873 340 aa3.15□□□□□ -1.91
SCFD1-218ENST00000556256 GRIK2Q13002 908 aa3.15□□□□□ -1.91
SCFD1-218ENST00000556256 AP5B1Q2VPB7 878 aa3.15□□□□□ -1.91
SCFD1-218ENST00000556256 ZNF852Q6ZMS4 543 aa3.15□□□□□ -1.91
SCFD1-218ENST00000556256 TMEM219Q86XT9 240 aa3.15□□□□□ -1.91
SCFD1-218ENST00000556256 TEX19Q8NA77 164 aa3.15□□□□□ -1.91
SCFD1-218ENST00000556256 HCAR2Q8TDS4 363 aa3.15□□□□□ -1.91
SCFD1-218ENST00000556256 RNFT2Q96EX2 444 aa3.15□□□□□ -1.91
SCFD1-218ENST00000556256 NAP1L4Q99733 375 aaKnown RBP3.15□□□□□ -1.91
SCFD1-218ENST00000556256 CLSTN3Q9BQT9 956 aa3.15□□□□□ -1.91
SCFD1-218ENST00000556256 UBA5Q9GZZ9 404 aa3.15□□□□□ -1.91
SCFD1-218ENST00000556256 STN1Q9H668 368 aaKnown RBP3.15□□□□□ -1.91
SCFD1-218ENST00000556256 SPATS2LQ9NUQ6 558 aaKnown RBP3.15□□□□□ -1.91
SCFD1-218ENST00000556256 FAM118AQ9NWS6 357 aa3.15□□□□□ -1.91
SCFD1-218ENST00000556256 HDAC6Q9UBN7 1215 aa3.15□□□□□ -1.91
SCFD1-218ENST00000556256 HSF4Q9ULV5 492 aa3.15□□□□□ -1.91
SCFD1-218ENST00000556256 CLDN16Q9Y5I7 305 aa3.15□□□□□ -1.91
SCFD1-218ENST00000556256 CCDC196A0A1B0GTZ2 297 aa3.14□□□□□ -1.91
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms