RNA–Protein interactions for RNA: ENST00000552440.5

USP44-208, Transcript of ubiquitin specific peptidase 44, human

TSL 5 BASIC

Gene USP44, Length 1,818 nt, Biotype protein coding, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
USP44-208	ENST00000552440	JKAMP	Q9P055	326 aa		4.25	□□□□□ -1.73
USP44-208	ENST00000552440	MAD2L2	Q9UI95	211 aa		4.25	□□□□□ -1.73
USP44-208	ENST00000552440	FBXW2	Q9UKT8	454 aa		4.25	□□□□□ -1.73
USP44-208	ENST00000552440	CLEC4A	Q9UMR7	237 aa		4.25	□□□□□ -1.73
USP44-208	ENST00000552440	SSX2IP	Q9Y2D8	614 aa		4.25	□□□□□ -1.73
USP44-208	ENST00000552440	ZBTB1	Q9Y2K1	713 aa		4.25	□□□□□ -1.73
USP44-208	ENST00000552440	SLC4A4	Q9Y6R1	1079 aa		4.25	□□□□□ -1.73
USP44-208	ENST00000552440	THOC2	Q8NI27	1593 aa	Known RBP	4.25	□□□□□ -1.73
USP44-208	ENST00000552440	AKNA	Q7Z591	1439 aa		4.25	□□□□□ -1.73
USP44-208	ENST00000552440	NES	P48681	1621 aa		4.25	□□□□□ -1.73
USP44-208	ENST00000552440		A0A1B0GWJ7	208 aa		4.25	□□□□□ -1.73
USP44-208	ENST00000552440	ZSCAN5B	A6NJL1	495 aa		4.25	□□□□□ -1.73
USP44-208	ENST00000552440		M0QYG6	137 aa		4.25	□□□□□ -1.73
USP44-208	ENST00000552440	EBAG9	O00559	213 aa		4.25	□□□□□ -1.73
USP44-208	ENST00000552440	SOCS6	O14544	535 aa		4.25	□□□□□ -1.73
USP44-208	ENST00000552440	AVIL	O75366	819 aa		4.25	□□□□□ -1.73
USP44-208	ENST00000552440	PRDM1	O75626	825 aa		4.25	□□□□□ -1.73
USP44-208	ENST00000552440	MT-ATP6	P00846	226 aa		4.25	□□□□□ -1.73
USP44-208	ENST00000552440	ABHD2	P08910	425 aa		4.25	□□□□□ -1.73
USP44-208	ENST00000552440	CD19	P15391	556 aa		4.25	□□□□□ -1.73
USP44-208	ENST00000552440	ZNF8	P17098	575 aa	Predicted RBP	4.25	□□□□□ -1.73
USP44-208	ENST00000552440	MYF6	P23409	242 aa		4.25	□□□□□ -1.73
USP44-208	ENST00000552440	SFN	P31947	248 aa		4.25	□□□□□ -1.73
USP44-208	ENST00000552440	CTNNB1	P35222	781 aa		4.25	□□□□□ -1.73
USP44-208	ENST00000552440	CASR	P41180	1078 aa		4.25	□□□□□ -1.73
USP44-208	ENST00000552440	PTGER3	P43115	390 aa		4.25	□□□□□ -1.73
USP44-208	ENST00000552440	MEOX1	P50221	254 aa		4.25	□□□□□ -1.73
USP44-208	ENST00000552440	VCP	P55072	806 aa	Known RBP	4.25	□□□□□ -1.73
USP44-208	ENST00000552440	HADHB	P55084	474 aa	Known RBP	4.25	□□□□□ -1.73
USP44-208	ENST00000552440	EFNB1	P98172	346 aa		4.25	□□□□□ -1.73
USP44-208	ENST00000552440	SP2	Q02086	613 aa		4.25	□□□□□ -1.73
USP44-208	ENST00000552440	RAPSN	Q13702	412 aa		4.25	□□□□□ -1.73
USP44-208	ENST00000552440	PCOLCE	Q15113	449 aa		4.25	□□□□□ -1.73
USP44-208	ENST00000552440	PGM5	Q15124	567 aa		4.25	□□□□□ -1.73
USP44-208	ENST00000552440	SGCB	Q16585	318 aa		4.25	□□□□□ -1.73
USP44-208	ENST00000552440	FILIP1L	Q4L180	1135 aa		4.25	□□□□□ -1.73
USP44-208	ENST00000552440	IGSF11	Q5DX21	431 aa		4.25	□□□□□ -1.73
USP44-208	ENST00000552440	SPATA46	Q5T0L3	261 aa		4.25	□□□□□ -1.73
USP44-208	ENST00000552440	ATAD3B	Q5T9A4	648 aa		4.25	□□□□□ -1.73
USP44-208	ENST00000552440	CACHD1	Q5VU97	1274 aa		4.25	□□□□□ -1.73
USP44-208	ENST00000552440	KRT79	Q5XKE5	535 aa		4.25	□□□□□ -1.73
USP44-208	ENST00000552440	NOTUM	Q6P988	496 aa		4.25	□□□□□ -1.73
USP44-208	ENST00000552440	PSRC1	Q6PGN9	363 aa	Predicted RBP	4.25	□□□□□ -1.73
USP44-208	ENST00000552440	PIK3AP1	Q6ZUJ8	805 aa		4.25	□□□□□ -1.73
USP44-208	ENST00000552440	C1orf186	Q6ZWK4	172 aa		4.25	□□□□□ -1.73
USP44-208	ENST00000552440	USP37	Q86T82	979 aa		4.25	□□□□□ -1.73
USP44-208	ENST00000552440	VASH2	Q86V25	355 aa		4.25	□□□□□ -1.73
USP44-208	ENST00000552440	DHX40	Q8IX18	779 aa	Known RBP	4.25	□□□□□ -1.73
USP44-208	ENST00000552440	DBF4B	Q8NFT6	615 aa		4.25	□□□□□ -1.73
USP44-208	ENST00000552440	OR52E1	Q8NGJ3	308 aa		4.25	□□□□□ -1.73
USP44-208	ENST00000552440	CHURC1	Q8WUH1	139 aa		4.25	□□□□□ -1.73
USP44-208	ENST00000552440	ARHGAP45	Q92619	1136 aa		4.25	□□□□□ -1.73
USP44-208	ENST00000552440	GCDH	Q92947	438 aa	Predicted RBP	4.25	□□□□□ -1.73
USP44-208	ENST00000552440	TMEM186	Q96B77	213 aa		4.25	□□□□□ -1.73
USP44-208	ENST00000552440	EEF2KMT	Q96G04	330 aa		4.25	□□□□□ -1.73
USP44-208	ENST00000552440	SPATA13	Q96N96	652 aa		4.25	□□□□□ -1.73
USP44-208	ENST00000552440	DDX50	Q9BQ39	737 aa	Known RBP	4.25	□□□□□ -1.73
USP44-208	ENST00000552440	CLSTN3	Q9BQT9	956 aa		4.25	□□□□□ -1.73
USP44-208	ENST00000552440	MESP1	Q9BRJ9	268 aa		4.25	□□□□□ -1.73
USP44-208	ENST00000552440	MRI1	Q9BV20	369 aa		4.25	□□□□□ -1.73
USP44-208	ENST00000552440	EDEM2	Q9BV94	578 aa		4.25	□□□□□ -1.73
USP44-208	ENST00000552440	CCSER1	Q9C0I3	900 aa		4.25	□□□□□ -1.73
USP44-208	ENST00000552440	TUFT1	Q9NNX1	390 aa		4.25	□□□□□ -1.73
USP44-208	ENST00000552440	ARL8B	Q9NVJ2	186 aa		4.25	□□□□□ -1.73
USP44-208	ENST00000552440	FBXO34	Q9NWN3	711 aa		4.25	□□□□□ -1.73
USP44-208	ENST00000552440	QPCTL	Q9NXS2	382 aa		4.25	□□□□□ -1.73
USP44-208	ENST00000552440	SMPD3	Q9NY59	655 aa	Predicted RBP	4.25	□□□□□ -1.73
USP44-208	ENST00000552440	OGFR	Q9NZT2	677 aa		4.25	□□□□□ -1.73
USP44-208	ENST00000552440	ITGA11	Q9UKX5	1188 aa		4.25	□□□□□ -1.73
USP44-208	ENST00000552440	CCPG1	Q9ULG6	757 aa		4.25	□□□□□ -1.73
USP44-208	ENST00000552440	RIMKLB	Q9ULI2	386 aa		4.25	□□□□□ -1.73
USP44-208	ENST00000552440	SLC45A2	Q9UMX9	530 aa		4.25	□□□□□ -1.73
USP44-208	ENST00000552440	CDY1	Q9Y6F8	540 aa		4.25	□□□□□ -1.73
USP44-208	ENST00000552440	BRD4	O60885	1362 aa	Predicted RBP	4.24	□□□□□ -1.73
USP44-208	ENST00000552440	CAPN14	A8MX76	684 aa		4.24	□□□□□ -1.73
USP44-208	ENST00000552440	E2F3	O00716	465 aa		4.24	□□□□□ -1.73
USP44-208	ENST00000552440	KIAA0391	O15091	583 aa	Known RBP	4.24	□□□□□ -1.73
USP44-208	ENST00000552440	CETN3	O15182	167 aa		4.24	□□□□□ -1.73
USP44-208	ENST00000552440	CLIC2	O15247	247 aa		4.24	□□□□□ -1.73
USP44-208	ENST00000552440	LIAS	O43766	372 aa		4.24	□□□□□ -1.73
USP44-208	ENST00000552440	MTX2	O75431	263 aa		4.24	□□□□□ -1.73
USP44-208	ENST00000552440	ZNF254	O75437	659 aa		4.24	□□□□□ -1.73
USP44-208	ENST00000552440	SCAF4	O95104	1147 aa	Known RBP	4.24	□□□□□ -1.73
USP44-208	ENST00000552440	YEATS4	O95619	227 aa		4.24	□□□□□ -1.73
USP44-208	ENST00000552440	ITGB1	P05556	798 aa		4.24	□□□□□ -1.73
USP44-208	ENST00000552440	ADH4	P08319	380 aa		4.24	□□□□□ -1.73
USP44-208	ENST00000552440	FAM86B2	P0C5J1	330 aa		4.24	□□□□□ -1.73
USP44-208	ENST00000552440	FAM58BP	P0C7Q3	252 aa		4.24	□□□□□ -1.73
USP44-208	ENST00000552440	ZNF888	P0CJ79	500 aa	Predicted RBP	4.24	□□□□□ -1.73
USP44-208	ENST00000552440	VSIG10L2	P0DP72	767 aa		4.24	□□□□□ -1.73
USP44-208	ENST00000552440	CYP2C9	P11712	490 aa		4.24	□□□□□ -1.73
USP44-208	ENST00000552440	MAK	P20794	623 aa		4.24	□□□□□ -1.73
USP44-208	ENST00000552440	ALDH4A1	P30038	563 aa		4.24	□□□□□ -1.73
USP44-208	ENST00000552440	VIPR2	P41587	438 aa		4.24	□□□□□ -1.73
USP44-208	ENST00000552440	KCNJ1	P48048	391 aa		4.24	□□□□□ -1.73
USP44-208	ENST00000552440	VPS41	P49754	854 aa		4.24	□□□□□ -1.73
USP44-208	ENST00000552440	CLCNKA	P51800	687 aa		4.24	□□□□□ -1.73
USP44-208	ENST00000552440	SPAG1	Q07617	926 aa		4.24	□□□□□ -1.73
USP44-208	ENST00000552440	DUSP8	Q13202	625 aa		4.24	□□□□□ -1.73
USP44-208	ENST00000552440	SCGB2A2	Q13296	93 aa		4.24	□□□□□ -1.73

Retrieved 100 of 20,778 RNA–protein pairs in 115.1 ms