RNA–Protein interactions for RNA: ENST00000540469.5

SFSWAP-209, Transcript of splicing factor SWAP, humanhuman

TSL 3

Gene SFSWAP, Length 3,536 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SFSWAP-209ENST00000540469 RFC2P35250 354 aa12.86□□□□□ -0.35
SFSWAP-209ENST00000540469 SERPINB10P48595 397 aa12.86□□□□□ -0.35
SFSWAP-209ENST00000540469 GALNT2Q10471 571 aa12.86□□□□□ -0.35
SFSWAP-209ENST00000540469 LAMC2Q13753 1193 aa12.86□□□□□ -0.35
SFSWAP-209ENST00000540469 SNX17Q15036 470 aa12.86□□□□□ -0.35
SFSWAP-209ENST00000540469 AASDHQ4L235 1098 aaPredicted RBP12.86□□□□□ -0.35
SFSWAP-209ENST00000540469 RABL3Q5HYI8 236 aa12.86□□□□□ -0.35
SFSWAP-209ENST00000540469 DSG4Q86SJ6 1040 aa12.86□□□□□ -0.35
SFSWAP-209ENST00000540469 Q8N9G6 341 aaPredicted RBP12.86□□□□□ -0.35
SFSWAP-209ENST00000540469 PPHLN1Q8NEY8 458 aaKnown RBP12.86□□□□□ -0.35
SFSWAP-209ENST00000540469 PSMA8Q8TAA3 256 aa12.86□□□□□ -0.35
SFSWAP-209ENST00000540469 TBRG4Q969Z0 631 aaKnown RBP eCLIP12.86□□□□□ -0.35
SFSWAP-209ENST00000540469 CELF6Q96J87 481 aaKnown RBP12.86□□□□□ -0.35
SFSWAP-209ENST00000540469 ATXN3LQ9H3M9 355 aa12.86□□□□□ -0.35
SFSWAP-209ENST00000540469 ALG2Q9H553 416 aa12.86□□□□□ -0.35
SFSWAP-209ENST00000540469 HPS4Q9NQG7 708 aa12.86□□□□□ -0.35
SFSWAP-209ENST00000540469 STAP1Q9ULZ2 295 aa12.86□□□□□ -0.35
SFSWAP-209ENST00000540469 RAD54BQ9Y620 910 aa12.86□□□□□ -0.35
SFSWAP-209ENST00000540469 CCDC162PA2VCL2 907 aa12.86□□□□□ -0.35
SFSWAP-209ENST00000540469 BBIP1A8MTZ0 92 aa12.86□□□□□ -0.35
SFSWAP-209ENST00000540469 EIF3FO00303 357 aaPredicted RBP12.86□□□□□ -0.35
SFSWAP-209ENST00000540469 DLGAP3O95886 979 aa12.86□□□□□ -0.35
SFSWAP-209ENST00000540469 CPB1P15086 417 aa12.86□□□□□ -0.35
SFSWAP-209ENST00000540469 CES1P23141 567 aa12.86□□□□□ -0.35
SFSWAP-209ENST00000540469 INCA1Q0VD86 236 aa12.86□□□□□ -0.35
SFSWAP-209ENST00000540469 BST2Q10589 180 aaKnown RBP12.86□□□□□ -0.35
SFSWAP-209ENST00000540469 SF3B4Q15427 424 aaKnown RBP eCLIP12.86□□□□□ -0.355e-13■■■■■ 44
SFSWAP-209ENST00000540469 ESRP1Q6NXG1 681 aaKnown RBP12.86□□□□□ -0.35
SFSWAP-209ENST00000540469 ZNF555Q8NEP9 628 aa12.86□□□□□ -0.35
SFSWAP-209ENST00000540469 SLC7A14Q8TBB6 771 aa12.86□□□□□ -0.35
SFSWAP-209ENST00000540469 SGCDQ92629 289 aa12.86□□□□□ -0.35
SFSWAP-209ENST00000540469 DPEP3Q9H4B8 488 aa12.86□□□□□ -0.35
SFSWAP-209ENST00000540469 SPON1Q9HCB6 807 aa12.86□□□□□ -0.35
SFSWAP-209ENST00000540469 INTS10Q9NVR2 710 aaKnown RBP12.86□□□□□ -0.35
SFSWAP-209ENST00000540469 AKT3Q9Y243 479 aa12.86□□□□□ -0.35
SFSWAP-209ENST00000540469 TNFSF13BQ9Y275 285 aa12.86□□□□□ -0.35
SFSWAP-209ENST00000540469 PTGDR2Q9Y5Y4 395 aa12.86□□□□□ -0.35
SFSWAP-209ENST00000540469 A0A087WZ62 844 aa12.85□□□□□ -0.35
SFSWAP-209ENST00000540469 ERI2A8K979 691 aaKnown RBP12.85□□□□□ -0.35
SFSWAP-209ENST00000540469 AURKAO14965 403 aa12.85□□□□□ -0.35
SFSWAP-209ENST00000540469 ARL1P40616 181 aaPredicted RBP12.85□□□□□ -0.35
SFSWAP-209ENST00000540469 ADIGQ0VDE8 80 aa12.85□□□□□ -0.35
SFSWAP-209ENST00000540469 TUBA3CQ13748 450 aa12.85□□□□□ -0.35
SFSWAP-209ENST00000540469 CCDC81Q6ZN84 652 aa12.85□□□□□ -0.35
SFSWAP-209ENST00000540469 STRADAQ7RTN6 431 aa12.85□□□□□ -0.35
SFSWAP-209ENST00000540469 THAP5Q7Z6K1 395 aa12.85□□□□□ -0.35
SFSWAP-209ENST00000540469 SLC22A16Q86VW1 577 aa12.85□□□□□ -0.35
SFSWAP-209ENST00000540469 ANKRD13BQ86YJ7 626 aa12.85□□□□□ -0.35
SFSWAP-209ENST00000540469 TTC30BQ8N4P2 665 aa12.85□□□□□ -0.35
SFSWAP-209ENST00000540469 ZFP90Q8TF47 636 aa12.85□□□□□ -0.35
SFSWAP-209ENST00000540469 S100ZQ8WXG8 99 aa12.85□□□□□ -0.35
SFSWAP-209ENST00000540469 TSPAN18Q96SJ8 248 aa12.85□□□□□ -0.35
SFSWAP-209ENST00000540469 MLPHQ9BV36 600 aaPredicted RBP12.85□□□□□ -0.35
SFSWAP-209ENST00000540469 CHID1Q9BWS9 393 aa12.85□□□□□ -0.35
SFSWAP-209ENST00000540469 ASB7Q9H672 318 aa12.85□□□□□ -0.35
SFSWAP-209ENST00000540469 ALG9Q9H6U8 611 aa12.85□□□□□ -0.35
SFSWAP-209ENST00000540469 AKTIPQ9H8T0 292 aa12.85□□□□□ -0.35
SFSWAP-209ENST00000540469 C8orf4Q9NR00 106 aa12.85□□□□□ -0.35
SFSWAP-209ENST00000540469 ABCB10Q9NRK6 738 aa12.85□□□□□ -0.35
SFSWAP-209ENST00000540469 CMTM6Q9NX76 183 aa12.85□□□□□ -0.35
SFSWAP-209ENST00000540469 A0A087X1B8 175 aa12.85□□□□□ -0.35
SFSWAP-209ENST00000540469 CYP2B6P20813 491 aa12.85□□□□□ -0.35
SFSWAP-209ENST00000540469 MATKP42679 507 aa12.85□□□□□ -0.35
SFSWAP-209ENST00000540469 TUFMP49411 452 aaKnown RBP12.85□□□□□ -0.35
SFSWAP-209ENST00000540469 GSK3BP49841 420 aa12.85□□□□□ -0.35
SFSWAP-209ENST00000540469 BCAT1P54687 386 aa12.85□□□□□ -0.35
SFSWAP-209ENST00000540469 KCNK10P57789 538 aa12.85□□□□□ -0.35
SFSWAP-209ENST00000540469 LIPEQ05469 1076 aa12.85□□□□□ -0.35
SFSWAP-209ENST00000540469 BCL2A1Q16548 175 aa12.85□□□□□ -0.35
SFSWAP-209ENST00000540469 LY6KQ17RY6 165 aa12.85□□□□□ -0.35
SFSWAP-209ENST00000540469 SLC10A6Q3KNW5 377 aa12.85□□□□□ -0.35
SFSWAP-209ENST00000540469 TIGD2Q4W5G0 525 aa12.85□□□□□ -0.35
SFSWAP-209ENST00000540469 LCN8Q6JVE9 175 aa12.85□□□□□ -0.35
SFSWAP-209ENST00000540469 OTOP3Q7RTS5 596 aa12.85□□□□□ -0.35
SFSWAP-209ENST00000540469 SPRED1Q7Z699 444 aa12.85□□□□□ -0.35
SFSWAP-209ENST00000540469 LRRC58Q96CX6 371 aa12.85□□□□□ -0.35
SFSWAP-209ENST00000540469 GBA3Q9H227 469 aa12.85□□□□□ -0.35
SFSWAP-209ENST00000540469 PARVBQ9HBI1 364 aa12.85□□□□□ -0.35
SFSWAP-209ENST00000540469 RCOR3Q9P2K3 495 aaPredicted RBP12.85□□□□□ -0.35
SFSWAP-209ENST00000540469 ERVK-11Q9UQG0 969 aa12.85□□□□□ -0.35
SFSWAP-209ENST00000540469 SPO11Q9Y5K1 396 aa12.85□□□□□ -0.35
SFSWAP-209ENST00000540469 ZNF831Q5JPB2 1677 aa12.85□□□□□ -0.35
SFSWAP-209ENST00000540469 H3BMM5 538 aa12.85□□□□□ -0.35
SFSWAP-209ENST00000540469 SEC14L2O76054 403 aa12.85□□□□□ -0.35
SFSWAP-209ENST00000540469 FARP2O94887 1054 aaPredicted RBP12.85□□□□□ -0.35
SFSWAP-209ENST00000540469 SLC4A1P02730 911 aa12.85□□□□□ -0.35
SFSWAP-209ENST00000540469 PAMP19021 973 aa12.85□□□□□ -0.35
SFSWAP-209ENST00000540469 CAPN3P20807 821 aa12.85□□□□□ -0.35
SFSWAP-209ENST00000540469 SLC1A2P43004 574 aa12.85□□□□□ -0.35
SFSWAP-209ENST00000540469 IL1RL1Q01638 556 aa12.85□□□□□ -0.35
SFSWAP-209ENST00000540469 DGCR6Q14129 220 aa12.85□□□□□ -0.35
SFSWAP-209ENST00000540469 TMEM132BQ14DG7 1078 aa12.85□□□□□ -0.35
SFSWAP-209ENST00000540469 HACD2Q6Y1H2 254 aa12.85□□□□□ -0.35
SFSWAP-209ENST00000540469 FUNDC1Q8IVP5 155 aa12.85□□□□□ -0.35
SFSWAP-209ENST00000540469 SPATA22Q8NHS9 363 aa12.85□□□□□ -0.35
SFSWAP-209ENST00000540469 VPS33AQ96AX1 596 aa12.85□□□□□ -0.35
SFSWAP-209ENST00000540469 OTUD5Q96G74 571 aa12.85□□□□□ -0.35
SFSWAP-209ENST00000540469 NSMCE2Q96MF7 247 aa12.85□□□□□ -0.35
SFSWAP-209ENST00000540469 CSF3RQ99062 836 aa12.85□□□□□ -0.35
SFSWAP-209ENST00000540469 FSD1LQ9BXM9 530 aa12.85□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 41.5 ms