RNA–Protein interactions for RNA: ENST00000536107.5

YBX3-205, Transcript of Y-box binding protein 3, human

TSL 2

Gene YBX3, Length 438 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
YBX3-205	ENST00000536107	EFNA5	P52803	228 aa		4.08	□□□□□ -1.76
YBX3-205	ENST00000536107	LILRA4	P59901	499 aa		4.08	□□□□□ -1.76
YBX3-205	ENST00000536107	RPS14	P62263	151 aa	Known RBP	4.08	□□□□□ -1.76
YBX3-205	ENST00000536107	ZBTB16	Q05516	673 aa		4.08	□□□□□ -1.76
YBX3-205	ENST00000536107	CDC20	Q12834	499 aa		4.08	□□□□□ -1.76
YBX3-205	ENST00000536107	MPP3	Q13368	585 aa		4.08	□□□□□ -1.76
YBX3-205	ENST00000536107	ZNF234	Q14588	700 aa		4.08	□□□□□ -1.76
YBX3-205	ENST00000536107	ZRSR2	Q15696	482 aa	Known RBP	4.08	□□□□□ -1.76
YBX3-205	ENST00000536107	POM121L1P	Q3SYA9	428 aa		4.08	□□□□□ -1.76
YBX3-205	ENST00000536107	NADK2	Q4G0N4	442 aa		4.08	□□□□□ -1.76
YBX3-205	ENST00000536107		Q4G0T1	1027 aa		4.08	□□□□□ -1.76
YBX3-205	ENST00000536107	FNDC3B	Q53EP0	1204 aa	Known RBP	4.08	□□□□□ -1.76
YBX3-205	ENST00000536107	PRR30	Q53SZ7	412 aa	Predicted RBP	4.08	□□□□□ -1.76
YBX3-205	ENST00000536107	ZNF542P	Q5EBM4	170 aa		4.08	□□□□□ -1.76
YBX3-205	ENST00000536107	VWA2	Q5GFL6	755 aa		4.08	□□□□□ -1.76
YBX3-205	ENST00000536107	CDCA2	Q69YH5	1023 aa	Predicted RBP	4.08	□□□□□ -1.76
YBX3-205	ENST00000536107	ZCCHC8	Q6NZY4	707 aa	Known RBP	4.08	□□□□□ -1.76
YBX3-205	ENST00000536107	KIAA1549L	Q6ZVL6	1849 aa		4.08	□□□□□ -1.76
YBX3-205	ENST00000536107	PRPF39	Q86UA1	669 aa	Known RBP	4.08	□□□□□ -1.76
YBX3-205	ENST00000536107	XYLT1	Q86Y38	959 aa		4.08	□□□□□ -1.76
YBX3-205	ENST00000536107	SPATA2L	Q8IUW3	424 aa	Predicted RBP	4.08	□□□□□ -1.76
YBX3-205	ENST00000536107	AHI1	Q8N157	1196 aa		4.08	□□□□□ -1.76
YBX3-205	ENST00000536107	NAGS	Q8N159	534 aa		4.08	□□□□□ -1.76
YBX3-205	ENST00000536107	TMTC2	Q8N394	836 aa		4.08	□□□□□ -1.76
YBX3-205	ENST00000536107	SH2D3C	Q8N5H7	860 aa		4.08	□□□□□ -1.76
YBX3-205	ENST00000536107	FANCB	Q8NB91	859 aa		4.08	□□□□□ -1.76
YBX3-205	ENST00000536107	GLB1L3	Q8NCI6	653 aa	Predicted RBP	4.08	□□□□□ -1.76
YBX3-205	ENST00000536107	CHDH	Q8NE62	594 aa	Predicted RBP	4.08	□□□□□ -1.76
YBX3-205	ENST00000536107	BICD2	Q8TD16	824 aa		4.08	□□□□□ -1.76
YBX3-205	ENST00000536107	DLG3	Q92796	817 aa		4.08	□□□□□ -1.76
YBX3-205	ENST00000536107	KIAA1143	Q96AT1	154 aa	Predicted RBP	4.08	□□□□□ -1.76
YBX3-205	ENST00000536107	PPP1R13B	Q96KQ4	1090 aa		4.08	□□□□□ -1.76
YBX3-205	ENST00000536107	IFT74	Q96LB3	600 aa		4.08	□□□□□ -1.76
YBX3-205	ENST00000536107	WDR92	Q96MX6	357 aa		4.08	□□□□□ -1.76
YBX3-205	ENST00000536107	GFM1	Q96RP9	751 aa	Known RBP	4.08	□□□□□ -1.76
YBX3-205	ENST00000536107	HAPLN3	Q96S86	360 aa		4.08	□□□□□ -1.76
YBX3-205	ENST00000536107	CPPED1	Q9BRF8	314 aa	Predicted RBP	4.08	□□□□□ -1.76
YBX3-205	ENST00000536107	PYM1	Q9BRP8	204 aa	Known RBP	4.08	□□□□□ -1.76
YBX3-205	ENST00000536107	KIFC3	Q9BVG8	833 aa		4.08	□□□□□ -1.76
YBX3-205	ENST00000536107	CDT1	Q9H211	546 aa		4.08	□□□□□ -1.76
YBX3-205	ENST00000536107	GPN2	Q9H9Y4	310 aa	Predicted RBP	4.08	□□□□□ -1.76
YBX3-205	ENST00000536107	EBF2	Q9HAK2	575 aa		4.08	□□□□□ -1.76
YBX3-205	ENST00000536107	ZBTB40	Q9NUA8	1239 aa		4.08	□□□□□ -1.76
YBX3-205	ENST00000536107	TMLHE	Q9NVH6	421 aa		4.08	□□□□□ -1.76
YBX3-205	ENST00000536107	PLK2	Q9NYY3	685 aa		4.08	□□□□□ -1.76
YBX3-205	ENST00000536107	EHD2	Q9NZN4	543 aa		4.08	□□□□□ -1.76
YBX3-205	ENST00000536107	AKAP7	Q9P0M2	348 aa	Predicted RBP	4.08	□□□□□ -1.76
YBX3-205	ENST00000536107	LUZP4	Q9P127	313 aa		4.08	□□□□□ -1.76
YBX3-205	ENST00000536107	DDX19B	Q9UMR2	479 aa		4.08	□□□□□ -1.76
YBX3-205	ENST00000536107	PLA2G4C	Q9UP65	541 aa		4.08	□□□□□ -1.76
YBX3-205	ENST00000536107	CHST2	Q9Y4C5	530 aa		4.08	□□□□□ -1.76
YBX3-205	ENST00000536107	MYH9	P35579	1960 aa	Known RBP	4.07	□□□□□ -1.76
YBX3-205	ENST00000536107	MYO16	Q9Y6X6	1858 aa		4.07	□□□□□ -1.76
YBX3-205	ENST00000536107	TBC1D3D	A0A087WVF3	549 aa		4.07	□□□□□ -1.76
YBX3-205	ENST00000536107		A0A087WWV3	80 aa		4.07	□□□□□ -1.76
YBX3-205	ENST00000536107	TBC1D3I	A0A087WXS9	549 aa		4.07	□□□□□ -1.76
YBX3-205	ENST00000536107	TBC1D3E	A0A087X179	549 aa		4.07	□□□□□ -1.76
YBX3-205	ENST00000536107	TBC1D3K	A0A087X1G2	549 aa		4.07	□□□□□ -1.76
YBX3-205	ENST00000536107		A0A0B4J269	797 aa		4.07	□□□□□ -1.76
YBX3-205	ENST00000536107	TRAV20	A0A0B4J274	112 aa		4.07	□□□□□ -1.76
YBX3-205	ENST00000536107	CCDC66	A2RUB6	948 aa		4.07	□□□□□ -1.76
YBX3-205	ENST00000536107	TBC1D3F	A6NER0	549 aa	Predicted RBP	4.07	□□□□□ -1.76
YBX3-205	ENST00000536107	ANKUB1	A6NFN9	424 aa		4.07	□□□□□ -1.76
YBX3-205	ENST00000536107	RNF212B	A8MTL3	300 aa		4.07	□□□□□ -1.76
YBX3-205	ENST00000536107	TBC1D3L	B9A6J9	549 aa		4.07	□□□□□ -1.76
YBX3-205	ENST00000536107		K7ERI5	159 aa		4.07	□□□□□ -1.76
YBX3-205	ENST00000536107	ADAMTS3	O15072	1205 aa		4.07	□□□□□ -1.76
YBX3-205	ENST00000536107	SCAMP1	O15126	338 aa		4.07	□□□□□ -1.76
YBX3-205	ENST00000536107	DAPK3	O43293	454 aa		4.07	□□□□□ -1.76
YBX3-205	ENST00000536107	HOXA3	O43365	443 aa	Predicted RBP	4.07	□□□□□ -1.76
YBX3-205	ENST00000536107	DUX1	O43812	170 aa		4.07	□□□□□ -1.76
YBX3-205	ENST00000536107	CACNG3	O60359	315 aa		4.07	□□□□□ -1.76
YBX3-205	ENST00000536107	ZG16	O60844	167 aa		4.07	□□□□□ -1.76
YBX3-205	ENST00000536107	RNASEH1	O60930	286 aa	Known RBP	4.07	□□□□□ -1.76
YBX3-205	ENST00000536107	ATP2C2	O75185	946 aa		4.07	□□□□□ -1.76
YBX3-205	ENST00000536107	PROP1	O75360	226 aa		4.07	□□□□□ -1.76
YBX3-205	ENST00000536107	PIAS2	O75928	621 aa		4.07	□□□□□ -1.76
YBX3-205	ENST00000536107	TDP2	O95551	362 aa		4.07	□□□□□ -1.76
YBX3-205	ENST00000536107	EDN1	P05305	212 aa		4.07	□□□□□ -1.76
YBX3-205	ENST00000536107	CISD3	P0C7P0	127 aa		4.07	□□□□□ -1.76
YBX3-205	ENST00000536107	TBC1D3H	P0C7X1	549 aa		4.07	□□□□□ -1.76
YBX3-205	ENST00000536107	MCF2	P10911	925 aa		4.07	□□□□□ -1.76
YBX3-205	ENST00000536107	NAT1	P18440	290 aa		4.07	□□□□□ -1.76
YBX3-205	ENST00000536107	ATF4	P18848	351 aa	Predicted RBP	4.07	□□□□□ -1.76
YBX3-205	ENST00000536107	TCN2	P20062	427 aa		4.07	□□□□□ -1.76
YBX3-205	ENST00000536107	SDS	P20132	328 aa		4.07	□□□□□ -1.76
YBX3-205	ENST00000536107	KLK2	P20151	261 aa		4.07	□□□□□ -1.76
YBX3-205	ENST00000536107	LRPAP1	P30533	357 aa		4.07	□□□□□ -1.76
YBX3-205	ENST00000536107	MAT2A	P31153	395 aa	Known RBP	4.07	□□□□□ -1.76
YBX3-205	ENST00000536107	MCM5	P33992	734 aa		4.07	□□□□□ -1.76
YBX3-205	ENST00000536107	PPP3CC	P48454	512 aa		4.07	□□□□□ -1.76
YBX3-205	ENST00000536107	AARS	P49588	968 aa	Known RBP eCLIP	4.07	□□□□□ -1.76
YBX3-205	ENST00000536107	CCR5	P51681	352 aa		4.07	□□□□□ -1.76
YBX3-205	ENST00000536107	PDX1	P52945	283 aa		4.07	□□□□□ -1.76
YBX3-205	ENST00000536107	MC1R	Q01726	317 aa		4.07	□□□□□ -1.76
YBX3-205	ENST00000536107	CDK18	Q07002	472 aa		4.07	□□□□□ -1.76
YBX3-205	ENST00000536107	OVGP1	Q12889	678 aa		4.07	□□□□□ -1.76
YBX3-205	ENST00000536107	PPP2R5C	Q13362	524 aa		4.07	□□□□□ -1.76
YBX3-205	ENST00000536107	DRAP1	Q14919	205 aa	Predicted RBP	4.07	□□□□□ -1.76
YBX3-205	ENST00000536107	EPHA7	Q15375	998 aa		4.07	□□□□□ -1.76

Retrieved 100 of 20,778 RNA–protein pairs in 19.2 ms