RNA–Protein interactions for RNA: ENST00000531924.1

VPS28-215, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 695 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-215ENST00000531924 PEX6Q13608 980 aa14.75□□□□□ -0.05
VPS28-215ENST00000531924 NR1I3Q14994 352 aa14.75□□□□□ -0.05
VPS28-215ENST00000531924 FIGNQ5HY92 759 aa14.75□□□□□ -0.05
VPS28-215ENST00000531924 RALGPS1Q5JS13 557 aa14.75□□□□□ -0.05
VPS28-215ENST00000531924 CERCAMQ5T4B2 595 aa14.75□□□□□ -0.05
VPS28-215ENST00000531924 ARMC12Q5T9G4 340 aa14.75□□□□□ -0.05
VPS28-215ENST00000531924 SPECC1LQ69YQ0 1117 aa14.75□□□□□ -0.05
VPS28-215ENST00000531924 CCDC81Q6ZN84 652 aa14.75□□□□□ -0.05
VPS28-215ENST00000531924 USP45Q70EL2 814 aa14.75□□□□□ -0.05
VPS28-215ENST00000531924 B3GNT8Q7Z7M8 397 aa14.75□□□□□ -0.05
VPS28-215ENST00000531924 CLEC14AQ86T13 490 aa14.75□□□□□ -0.05
VPS28-215ENST00000531924 ZNF605Q86T29 641 aa14.75□□□□□ -0.05
VPS28-215ENST00000531924 HEATR4Q86WZ0 1026 aa14.75□□□□□ -0.05
VPS28-215ENST00000531924 GPR156Q8NFN8 814 aa14.75□□□□□ -0.05
VPS28-215ENST00000531924 TEKT4Q8WW24 435 aa14.75□□□□□ -0.05
VPS28-215ENST00000531924 PRR11Q96HE9 360 aaPredicted RBP14.75□□□□□ -0.05
VPS28-215ENST00000531924 COQ10AQ96MF6 247 aa14.75□□□□□ -0.05
VPS28-215ENST00000531924 LGR4Q9BXB1 951 aa14.75□□□□□ -0.05
VPS28-215ENST00000531924 GSDMCQ9BYG8 508 aa14.75□□□□□ -0.05
VPS28-215ENST00000531924 AKAP7Q9P0M2 348 aaPredicted RBP14.75□□□□□ -0.05
VPS28-215ENST00000531924 ANAPC7Q9UJX3 599 aa14.75□□□□□ -0.05
VPS28-215ENST00000531924 APPL1Q9UKG1 709 aa14.75□□□□□ -0.05
VPS28-215ENST00000531924 KALRNO60229 2985 aa14.74□□□□□ -0.05
VPS28-215ENST00000531924 PTPRQQ9UMZ3 2332 aa14.74□□□□□ -0.05
VPS28-215ENST00000531924 A0A1W2PQM1 296 aa14.74□□□□□ -0.05
VPS28-215ENST00000531924 RHPN2P1A8MT19 583 aa14.74□□□□□ -0.05
VPS28-215ENST00000531924 MYO1FO00160 1098 aa14.74□□□□□ -0.05
VPS28-215ENST00000531924 AGRPO00253 132 aa14.74□□□□□ -0.05
VPS28-215ENST00000531924 HTRA2O43464 458 aaPredicted RBP14.74□□□□□ -0.05
VPS28-215ENST00000531924 MAFKO60675 156 aa14.74□□□□□ -0.05
VPS28-215ENST00000531924 HEXIM1O94992 359 aaKnown RBP14.74□□□□□ -0.05
VPS28-215ENST00000531924 SERPING1P05155 500 aa14.74□□□□□ -0.05
VPS28-215ENST00000531924 PNLIPP16233 465 aa14.74□□□□□ -0.05
VPS28-215ENST00000531924 ETV3P41162 512 aa14.74□□□□□ -0.05
VPS28-215ENST00000531924 GNPDA1P46926 289 aa14.74□□□□□ -0.05
VPS28-215ENST00000531924 PDX1P52945 283 aa14.74□□□□□ -0.05
VPS28-215ENST00000531924 MAXP61244 160 aa14.74□□□□□ -0.05
VPS28-215ENST00000531924 CNGA3Q16281 694 aa14.74□□□□□ -0.05
VPS28-215ENST00000531924 HADHQ16836 314 aaKnown RBP14.74□□□□□ -0.05
VPS28-215ENST00000531924 MAP9Q49MG5 647 aa14.74□□□□□ -0.05
VPS28-215ENST00000531924 CCDC122Q5T0U0 273 aa14.74□□□□□ -0.05
VPS28-215ENST00000531924 PHF19Q5T6S3 580 aa14.74□□□□□ -0.05
VPS28-215ENST00000531924 KCTD16Q68DU8 428 aa14.74□□□□□ -0.05
VPS28-215ENST00000531924 RAET1GQ6H3X3 334 aa14.74□□□□□ -0.05
VPS28-215ENST00000531924 OGFOD3Q6PK18 319 aa14.74□□□□□ -0.05
VPS28-215ENST00000531924 LRRC49Q8IUZ0 686 aa14.74□□□□□ -0.05
VPS28-215ENST00000531924 CPLX3Q8WVH0 158 aa14.74□□□□□ -0.05
VPS28-215ENST00000531924 SYN2Q92777 582 aaPredicted RBP14.74□□□□□ -0.05
VPS28-215ENST00000531924 TMEM159Q96B96 161 aa14.74□□□□□ -0.05
VPS28-215ENST00000531924 MGME1Q9BQP7 344 aa14.74□□□□□ -0.05
VPS28-215ENST00000531924 NUP85Q9BW27 656 aa14.74□□□□□ -0.05
VPS28-215ENST00000531924 THAP2Q9H0W7 228 aa14.74□□□□□ -0.05
VPS28-215ENST00000531924 PCDH18Q9HCL0 1135 aa14.74□□□□□ -0.05
VPS28-215ENST00000531924 NT5MQ9NPB1 228 aa14.74□□□□□ -0.05
VPS28-215ENST00000531924 ETNK2Q9NVF9 386 aa14.74□□□□□ -0.05
VPS28-215ENST00000531924 PISDQ9UG56 409 aa14.74□□□□□ -0.05
VPS28-215ENST00000531924 LOXL2Q9Y4K0 774 aa14.74□□□□□ -0.05
VPS28-215ENST00000531924 RNF215Q9Y6U7 377 aa14.74□□□□□ -0.05
VPS28-215ENST00000531924 GCN1Q92616 2671 aaKnown RBP14.73□□□□□ -0.05
VPS28-215ENST00000531924 A0A1W2PQJ5 194 aa14.73□□□□□ -0.05
VPS28-215ENST00000531924 GOLGA6L19H0YKK7 550 aa14.73□□□□□ -0.05
VPS28-215ENST00000531924 NUDT21O43809 227 aaKnown RBP14.73□□□□□ -0.05
VPS28-215ENST00000531924 NOBOXO60393 691 aa14.73□□□□□ -0.05
VPS28-215ENST00000531924 PGLSO95336 258 aa14.73□□□□□ -0.05
VPS28-215ENST00000531924 CCNB1P14635 433 aa14.73□□□□□ -0.05
VPS28-215ENST00000531924 TCF4P15884 667 aa14.73□□□□□ -0.05
VPS28-215ENST00000531924 CTPS1P17812 591 aa14.73□□□□□ -0.05
VPS28-215ENST00000531924 SLC5A2P31639 672 aa14.73□□□□□ -0.05
VPS28-215ENST00000531924 CCKBRP32239 447 aa14.73□□□□□ -0.05
VPS28-215ENST00000531924 EPHB1P54762 984 aa14.73□□□□□ -0.05
VPS28-215ENST00000531924 UBASH3AP57075 661 aa14.73□□□□□ -0.05
VPS28-215ENST00000531924 FANCCQ00597 558 aa14.73□□□□□ -0.05
VPS28-215ENST00000531924 TRAF2Q12933 501 aa14.73□□□□□ -0.05
VPS28-215ENST00000531924 ZFYVE27Q5T4F4 411 aa14.73□□□□□ -0.05
VPS28-215ENST00000531924 HSD11B1LQ7Z5J1 315 aa14.73□□□□□ -0.05
VPS28-215ENST00000531924 SPRED1Q7Z699 444 aa14.73□□□□□ -0.05
VPS28-215ENST00000531924 PGBD5Q8N414 524 aa14.73□□□□□ -0.05
VPS28-215ENST00000531924 NIPA2Q8N8Q9 360 aa14.73□□□□□ -0.05
VPS28-215ENST00000531924 CCL4L1Q8NHW4 92 aa14.73□□□□□ -0.05
VPS28-215ENST00000531924 ZDHHC1Q8WTX9 485 aa14.73□□□□□ -0.05
VPS28-215ENST00000531924 SPOCK2Q92563 424 aa14.73□□□□□ -0.05
VPS28-215ENST00000531924 DTD2Q96FN9 168 aa14.73□□□□□ -0.05
VPS28-215ENST00000531924 WBP1Q96G27 269 aa14.73□□□□□ -0.05
VPS28-215ENST00000531924 BTBD6Q96KE9 485 aa14.73□□□□□ -0.05
VPS28-215ENST00000531924 CCNL2Q96S94 520 aaPredicted RBP14.73□□□□□ -0.05
VPS28-215ENST00000531924 CMKLR1Q99788 373 aa14.73□□□□□ -0.05
VPS28-215ENST00000531924 ATXN7L1Q9ULK2 861 aaPredicted RBP14.73□□□□□ -0.05
VPS28-215ENST00000531924 TTLL3Q9Y4R7 772 aa14.73□□□□□ -0.05
VPS28-215ENST00000531924 PCDHGA7Q9Y5G6 932 aa14.73□□□□□ -0.05
VPS28-215ENST00000531924 SMG1Q96Q15 3661 aaKnown RBP14.72□□□□□ -0.05
VPS28-215ENST00000531924 PSMD11O00231 422 aa14.72□□□□□ -0.05
VPS28-215ENST00000531924 C1QL1O75973 258 aa14.72□□□□□ -0.05
VPS28-215ENST00000531924 PEX11BO96011 259 aa14.72□□□□□ -0.05
VPS28-215ENST00000531924 HGFP14210 728 aa14.72□□□□□ -0.05
VPS28-215ENST00000531924 GM2AP17900 193 aa14.72□□□□□ -0.05
VPS28-215ENST00000531924 CR2P20023 1033 aa14.72□□□□□ -0.05
VPS28-215ENST00000531924 ALDH4A1P30038 563 aa14.72□□□□□ -0.05
VPS28-215ENST00000531924 GJC1P36383 396 aa14.72□□□□□ -0.05
VPS28-215ENST00000531924 GPR1P46091 355 aa14.72□□□□□ -0.05
VPS28-215ENST00000531924 PPM1FP49593 454 aaPredicted RBP14.72□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 37.5 ms