RNA–Protein interactions for RNA: ENST00000527827.1

CPSF1-202, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 2

Gene CPSF1, Length 619 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-202ENST00000527827 KIAA1524Q8TCG1 905 aa23.6■■□□□ 1.37
CPSF1-202ENST00000527827 HTR3CQ8WXA8 447 aa23.6■■□□□ 1.37
CPSF1-202ENST00000527827 EIF3CQ99613 913 aaKnown RBP23.6■■□□□ 1.37
CPSF1-202ENST00000527827 B3GNT4Q9C0J1 378 aa23.6■■□□□ 1.37
CPSF1-202ENST00000527827 CARS2Q9HA77 564 aaKnown RBP23.6■■□□□ 1.37
CPSF1-202ENST00000527827 SP110Q9HB58 689 aa23.6■■□□□ 1.37
CPSF1-202ENST00000527827 LIMA1Q9UHB6 759 aaKnown RBP23.6■■□□□ 1.37
CPSF1-202ENST00000527827 IL17BQ9UHF5 180 aa23.6■■□□□ 1.37
CPSF1-202ENST00000527827 BSNQ9UPA5 3926 aa23.6■■□□□ 1.37
CPSF1-202ENST00000527827 TTC24A2A3L6 582 aaPredicted RBP23.59■■□□□ 1.37
CPSF1-202ENST00000527827 CPNE6O95741 557 aa23.59■■□□□ 1.37
CPSF1-202ENST00000527827 FGF1P05230 155 aa23.59■■□□□ 1.37
CPSF1-202ENST00000527827 CEACAM5P06731 702 aa23.59■■□□□ 1.37
CPSF1-202ENST00000527827 CCL4P13236 92 aa23.59■■□□□ 1.37
CPSF1-202ENST00000527827 DESP17661 470 aa23.59■■□□□ 1.37
CPSF1-202ENST00000527827 PSMA2P25787 234 aa23.59■■□□□ 1.37
CPSF1-202ENST00000527827 CD82P27701 267 aa23.59■■□□□ 1.37
CPSF1-202ENST00000527827 AP1S1P61966 158 aa23.59■■□□□ 1.37
CPSF1-202ENST00000527827 CYP4F2P78329 520 aa23.59■■□□□ 1.37
CPSF1-202ENST00000527827 NR1D2Q14995 579 aa23.59■■□□□ 1.37
CPSF1-202ENST00000527827 AMZ1Q400G9 498 aa23.59■■□□□ 1.37
CPSF1-202ENST00000527827 CYP4V2Q6ZWL3 525 aaPredicted RBP23.59■■□□□ 1.37
CPSF1-202ENST00000527827 TP53INP2Q8IXH6 220 aa23.59■■□□□ 1.37
CPSF1-202ENST00000527827 SPOCK2Q92563 424 aa23.59■■□□□ 1.37
CPSF1-202ENST00000527827 NUS1Q96E22 293 aa23.59■■□□□ 1.37
CPSF1-202ENST00000527827 PSKH2Q96QS6 385 aa23.59■■□□□ 1.37
CPSF1-202ENST00000527827 ERGIC2Q96RQ1 377 aa23.59■■□□□ 1.37
CPSF1-202ENST00000527827 NUDT22Q9BRQ3 303 aa23.59■■□□□ 1.37
CPSF1-202ENST00000527827 SYT11Q9BT88 431 aa23.59■■□□□ 1.37
CPSF1-202ENST00000527827 PCSK1NQ9UHG2 260 aa23.59■■□□□ 1.37
CPSF1-202ENST00000527827 PCDHB11Q9Y5F2 797 aa23.59■■□□□ 1.37
CPSF1-202ENST00000527827 IQCJ-SCHIP1C9J366 451 aaPredicted RBP23.58■■□□□ 1.37
CPSF1-202ENST00000527827 PDE2AO00408 941 aaPredicted RBP23.58■■□□□ 1.37
CPSF1-202ENST00000527827 DAPK3O43293 454 aa23.58■■□□□ 1.37
CPSF1-202ENST00000527827 UBXN1Q04323 297 aa23.58■■□□□ 1.37
CPSF1-202ENST00000527827 CNGA3Q16281 694 aa23.58■■□□□ 1.37
CPSF1-202ENST00000527827 ZSCAN1Q8NBB4 408 aa23.58■■□□□ 1.37
CPSF1-202ENST00000527827 ZDHHC1Q8WTX9 485 aa23.58■■□□□ 1.37
CPSF1-202ENST00000527827 PTCD2Q8WV60 388 aaKnown RBP23.58■■□□□ 1.37
CPSF1-202ENST00000527827 SEMA3CQ99985 751 aa23.58■■□□□ 1.37
CPSF1-202ENST00000527827 TEX101Q9BY14 249 aa23.58■■□□□ 1.37
CPSF1-202ENST00000527827 SUDS3Q9H7L9 328 aaPredicted RBP23.58■■□□□ 1.37
CPSF1-202ENST00000527827 TAAR2Q9P1P5 351 aa23.58■■□□□ 1.37
CPSF1-202ENST00000527827 ST14Q9Y5Y6 855 aa23.58■■□□□ 1.37
CPSF1-202ENST00000527827 UBR5O95071 2799 aaPredicted RBP23.58■■□□□ 1.37
CPSF1-202ENST00000527827 ATMINO43313 823 aaPredicted RBP23.57■■□□□ 1.36
CPSF1-202ENST00000527827 HTRA2O43464 458 aaPredicted RBP23.57■■□□□ 1.36
CPSF1-202ENST00000527827 ALDH4A1P30038 563 aa23.57■■□□□ 1.36
CPSF1-202ENST00000527827 SLC10A7Q0GE19 358 aa23.57■■□□□ 1.36
CPSF1-202ENST00000527827 LBRQ14739 615 aaKnown RBP23.57■■□□□ 1.36
CPSF1-202ENST00000527827 PLEKHA7Q6IQ23 1121 aa23.57■■□□□ 1.36
CPSF1-202ENST00000527827 HEATR4Q86WZ0 1026 aa23.57■■□□□ 1.36
CPSF1-202ENST00000527827 CBARPQ8N350 705 aaPredicted RBP23.57■■□□□ 1.36
CPSF1-202ENST00000527827 FUCA2Q9BTY2 467 aa23.57■■□□□ 1.36
CPSF1-202ENST00000527827 GSDMCQ9BYG8 508 aa23.57■■□□□ 1.36
CPSF1-202ENST00000527827 FRMD8Q9BZ67 464 aaPredicted RBP23.57■■□□□ 1.36
CPSF1-202ENST00000527827 PHPT1Q9NRX4 125 aaPredicted RBP23.57■■□□□ 1.36
CPSF1-202ENST00000527827 SEPT3Q9UH03 358 aa23.57■■□□□ 1.36
CPSF1-202ENST00000527827 PCDHGC4Q9Y5F7 938 aa23.57■■□□□ 1.36
CPSF1-202ENST00000527827 IGHV5-10-1A0A0J9YXX1 117 aa23.56■■□□□ 1.36
CPSF1-202ENST00000527827 RHPN2P1A8MT19 583 aa23.56■■□□□ 1.36
CPSF1-202ENST00000527827 SUV39H1O43463 412 aa23.56■■□□□ 1.36
CPSF1-202ENST00000527827 HEXIM1O94992 359 aaKnown RBP23.56■■□□□ 1.36
CPSF1-202ENST00000527827 ECEL1O95672 775 aa23.56■■□□□ 1.36
CPSF1-202ENST00000527827 FERP16591 822 aa23.56■■□□□ 1.36
CPSF1-202ENST00000527827 AK4P27144 223 aaPredicted RBP23.56■■□□□ 1.36
CPSF1-202ENST00000527827 CD1CP29017 333 aa23.56■■□□□ 1.36
CPSF1-202ENST00000527827 RENBPP51606 427 aa23.56■■□□□ 1.36
CPSF1-202ENST00000527827 ARSDP51689 593 aa23.56■■□□□ 1.36
CPSF1-202ENST00000527827 ILF3Q12906 894 aaKnown RBP eCLIP23.56■■□□□ 1.36
CPSF1-202ENST00000527827 CLPPQ16740 277 aaPredicted RBP23.56■■□□□ 1.36
CPSF1-202ENST00000527827 PPP6R3Q5H9R7 873 aaPredicted RBP23.56■■□□□ 1.36
CPSF1-202ENST00000527827 TMCO4Q5TGY1 634 aa23.56■■□□□ 1.36
CPSF1-202ENST00000527827 APTXQ7Z2E3 356 aaKnown RBP23.56■■□□□ 1.36
CPSF1-202ENST00000527827 IRF2BP2Q7Z5L9 587 aa23.56■■□□□ 1.36
CPSF1-202ENST00000527827 RCBTB1Q8NDN9 531 aa23.56■■□□□ 1.36
CPSF1-202ENST00000527827 PATE1Q8WXA2 126 aa23.56■■□□□ 1.36
CPSF1-202ENST00000527827 TRIM7Q9C029 511 aa23.56■■□□□ 1.36
CPSF1-202ENST00000527827 PARVAQ9NVD7 372 aa23.56■■□□□ 1.36
CPSF1-202ENST00000527827 TRNAU1APQ9NX07 287 aaKnown RBP23.56■■□□□ 1.36
CPSF1-202ENST00000527827 CWC15Q9P013 229 aaKnown RBP23.56■■□□□ 1.36
CPSF1-202ENST00000527827 AKAP7Q9P0M2 348 aaPredicted RBP23.56■■□□□ 1.36
CPSF1-202ENST00000527827 SUFUQ9UMX1 484 aa23.56■■□□□ 1.36
CPSF1-202ENST00000527827 PTPN13Q12923 2485 aa23.55■■□□□ 1.36
CPSF1-202ENST00000527827 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP23.55■■□□□ 1.36
CPSF1-202ENST00000527827 LRRC10BA6NIK2 292 aa23.55■■□□□ 1.36
CPSF1-202ENST00000527827 TMCO5BA8MYB1 307 aa23.55■■□□□ 1.36
CPSF1-202ENST00000527827 HGSO14964 777 aaPredicted RBP23.55■■□□□ 1.36
CPSF1-202ENST00000527827 PEX11BO96011 259 aa23.55■■□□□ 1.36
CPSF1-202ENST00000527827 FGF3P11487 239 aaPredicted RBP23.55■■□□□ 1.36
CPSF1-202ENST00000527827 SFTPCP11686 197 aa23.55■■□□□ 1.36
CPSF1-202ENST00000527827 CR2P20023 1033 aa23.55■■□□□ 1.36
CPSF1-202ENST00000527827 MIPP30301 263 aa23.55■■□□□ 1.36
CPSF1-202ENST00000527827 VIPR1P32241 457 aa23.55■■□□□ 1.36
CPSF1-202ENST00000527827 GNPDA1P46926 289 aa23.55■■□□□ 1.36
CPSF1-202ENST00000527827 HCAR3P49019 387 aa23.55■■□□□ 1.36
CPSF1-202ENST00000527827 DPYSQ14117 519 aa23.55■■□□□ 1.36
CPSF1-202ENST00000527827 CLCA4Q14CN2 919 aa23.55■■□□□ 1.36
CPSF1-202ENST00000527827 TMEM164Q5U3C3 297 aa23.55■■□□□ 1.36
CPSF1-202ENST00000527827 ATG14Q6ZNE5 492 aa23.55■■□□□ 1.36
Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms