RNA–Protein interactions for RNA: ENST00000527020.5

USH1C-205, Transcript of USH1 protein network component harmonin, humanhuman

TSL 1 (best) BASIC

Gene USH1C, Length 2,159 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH1C-205ENST00000527020 ALDH2P05091 517 aa17.59■□□□□ 0.41
USH1C-205ENST00000527020 ZCCHC18P0CG32 403 aa17.59■□□□□ 0.41
USH1C-205ENST00000527020 HDCP19113 662 aa17.59■□□□□ 0.41
USH1C-205ENST00000527020 RGRP47804 291 aa17.59■□□□□ 0.41
USH1C-205ENST00000527020 OR4D1Q15615 310 aa17.59■□□□□ 0.41
USH1C-205ENST00000527020 TCTN1Q2MV58 587 aa17.59■□□□□ 0.41
USH1C-205ENST00000527020 UGT3A2Q3SY77 523 aa17.59■□□□□ 0.41
USH1C-205ENST00000527020 BHLHE22Q8NFJ8 381 aaPredicted RBP17.59■□□□□ 0.41
USH1C-205ENST00000527020 DBF4BQ8NFT6 615 aa17.59■□□□□ 0.41
USH1C-205ENST00000527020 BCL7CQ8WUZ0 217 aaPredicted RBP17.59■□□□□ 0.41
USH1C-205ENST00000527020 TRMOQ9BU70 441 aa17.59■□□□□ 0.41
USH1C-205ENST00000527020 UTP6Q9NYH9 597 aaKnown RBP17.59■□□□□ 0.41
USH1C-205ENST00000527020 C6orf203Q9P0P8 240 aaPredicted RBP17.59■□□□□ 0.41
USH1C-205ENST00000527020 SPO11Q9Y5K1 396 aa17.59■□□□□ 0.41
USH1C-205ENST00000527020 H3BMM5 538 aa17.58■□□□□ 0.4
USH1C-205ENST00000527020 UBDO15205 165 aa17.58■□□□□ 0.4
USH1C-205ENST00000527020 ACSL4O60488 711 aa17.58■□□□□ 0.4
USH1C-205ENST00000527020 SUPT7LO94864 414 aa17.58■□□□□ 0.4
USH1C-205ENST00000527020 SERPINF2P08697 491 aa17.58■□□□□ 0.4
USH1C-205ENST00000527020 ZNF37AP17032 561 aaPredicted RBP17.58■□□□□ 0.4
USH1C-205ENST00000527020 ALDH1A3P47895 512 aa17.58■□□□□ 0.4
USH1C-205ENST00000527020 HERVK_113P63132 956 aa17.58■□□□□ 0.4
USH1C-205ENST00000527020 SP3Q02447 781 aa17.58■□□□□ 0.4
USH1C-205ENST00000527020 GNA12Q03113 381 aa17.58■□□□□ 0.4
USH1C-205ENST00000527020 MRNIPQ6NTE8 343 aa17.58■□□□□ 0.4
USH1C-205ENST00000527020 PRSS55Q6UWB4 352 aaPredicted RBP17.58■□□□□ 0.4
USH1C-205ENST00000527020 AFAP1L2Q8N4X5 818 aa17.58■□□□□ 0.4
USH1C-205ENST00000527020 OR4L1Q8NH43 312 aa17.58■□□□□ 0.4
USH1C-205ENST00000527020 C3orf30Q96M34 536 aa17.58■□□□□ 0.4
USH1C-205ENST00000527020 TTLL2Q9BWV7 592 aa17.58■□□□□ 0.4
USH1C-205ENST00000527020 ERVK-6Q9BXR3 956 aa17.58■□□□□ 0.4
USH1C-205ENST00000527020 TRPC7Q9HCX4 862 aa17.58■□□□□ 0.4
USH1C-205ENST00000527020 CATSPERZQ9NTU4 200 aa17.58■□□□□ 0.4
USH1C-205ENST00000527020 RIMKLBQ9ULI2 386 aa17.58■□□□□ 0.4
USH1C-205ENST00000527020 PCDHB7Q9Y5E2 793 aa17.58■□□□□ 0.4
USH1C-205ENST00000527020 ADAM12O43184 909 aa17.57■□□□□ 0.4
USH1C-205ENST00000527020 NDST3O95803 873 aa17.57■□□□□ 0.4
USH1C-205ENST00000527020 ALDH1A1P00352 501 aa17.57■□□□□ 0.4
USH1C-205ENST00000527020 MTHFD2P13995 350 aa17.57■□□□□ 0.4
USH1C-205ENST00000527020 OGNP20774 298 aaKnown RBP17.57■□□□□ 0.4
USH1C-205ENST00000527020 STC1P52823 247 aa17.57■□□□□ 0.4
USH1C-205ENST00000527020 LRP8Q14114 963 aa17.57■□□□□ 0.4
USH1C-205ENST00000527020 FASTKQ14296 549 aaKnown RBP17.57■□□□□ 0.4
USH1C-205ENST00000527020 TYSND1Q2T9J0 566 aa17.57■□□□□ 0.4
USH1C-205ENST00000527020 LHX8Q68G74 356 aa17.57■□□□□ 0.4
USH1C-205ENST00000527020 LARP4Q71RC2 724 aaKnown RBP eCLIP17.57■□□□□ 0.4
USH1C-205ENST00000527020 SNX31Q8N9S9 440 aa17.57■□□□□ 0.4
USH1C-205ENST00000527020 FAM156AQ8NDB6 213 aa17.57■□□□□ 0.4
USH1C-205ENST00000527020 KLHL32Q96NJ5 620 aa17.57■□□□□ 0.4
USH1C-205ENST00000527020 AARSD1Q9BTE6 412 aaKnown RBP17.57■□□□□ 0.4
USH1C-205ENST00000527020 MAGEH1Q9H213 219 aa17.57■□□□□ 0.4
USH1C-205ENST00000527020 STARD7Q9NQZ5 370 aa17.57■□□□□ 0.4
USH1C-205ENST00000527020 CACNA2D2Q9NY47 1150 aa17.57■□□□□ 0.4
USH1C-205ENST00000527020 SRRDQ9UH36 339 aa17.57■□□□□ 0.4
USH1C-205ENST00000527020 RIMS3Q9UJD0 308 aa17.57■□□□□ 0.4
USH1C-205ENST00000527020 ZFP37Q9Y6Q3 630 aaPredicted RBP17.57■□□□□ 0.4
USH1C-205ENST00000527020 LRRC14BA6NHZ5 514 aa17.57■□□□□ 0.4
USH1C-205ENST00000527020 PSMD12O00232 456 aaPredicted RBP17.57■□□□□ 0.4
USH1C-205ENST00000527020 PPP6CO00743 305 aa17.57■□□□□ 0.4
USH1C-205ENST00000527020 TRPA1O75762 1119 aa17.57■□□□□ 0.4
USH1C-205ENST00000527020 GJB5O95377 273 aa17.57■□□□□ 0.4
USH1C-205ENST00000527020 PIM1P11309 404 aaPredicted RBP17.57■□□□□ 0.4
USH1C-205ENST00000527020 SELPP16109 830 aa17.57■□□□□ 0.4
USH1C-205ENST00000527020 VCLP18206 1134 aa17.57■□□□□ 0.4
USH1C-205ENST00000527020 PSMD8P48556 350 aa17.57■□□□□ 0.4
USH1C-205ENST00000527020 KPNA1P52294 538 aaPredicted RBP17.57■□□□□ 0.4
USH1C-205ENST00000527020 ZNF140P52738 457 aaPredicted RBP17.57■□□□□ 0.4
USH1C-205ENST00000527020 CDH13P55290 713 aa17.57■□□□□ 0.4
USH1C-205ENST00000527020 PSME3P61289 254 aa17.57■□□□□ 0.4
USH1C-205ENST00000527020 SH3BP2P78314 561 aa17.57■□□□□ 0.4
USH1C-205ENST00000527020 LAMB3Q13751 1172 aa17.57■□□□□ 0.4
USH1C-205ENST00000527020 GRAMD1BQ3KR37 738 aa17.57■□□□□ 0.4
USH1C-205ENST00000527020 AGKQ53H12 422 aa17.57■□□□□ 0.4
USH1C-205ENST00000527020 SETMARQ53H47 684 aaPredicted RBP17.57■□□□□ 0.4
USH1C-205ENST00000527020 LILRA2Q8N149 483 aa17.57■□□□□ 0.4
USH1C-205ENST00000527020 PCDH20Q8N6Y1 951 aaKnown RBP17.57■□□□□ 0.4
USH1C-205ENST00000527020 EXT2Q93063 718 aa17.57■□□□□ 0.4
USH1C-205ENST00000527020 CDKN2AIPNLQ96HQ2 116 aa17.57■□□□□ 0.4
USH1C-205ENST00000527020 PRICKLE1Q96MT3 831 aaPredicted RBP17.57■□□□□ 0.4
USH1C-205ENST00000527020 TSEN34Q9BSV6 310 aaKnown RBP17.57■□□□□ 0.4
USH1C-205ENST00000527020 MRPL1Q9BYD6 325 aaKnown RBP17.57■□□□□ 0.4
USH1C-205ENST00000527020 POPDC3Q9HBV1 291 aa17.57■□□□□ 0.4
USH1C-205ENST00000527020 PDP2Q9P2J9 529 aa17.57■□□□□ 0.4
USH1C-205ENST00000527020 SARDHQ9UL12 918 aa17.57■□□□□ 0.4
USH1C-205ENST00000527020 MED16Q9Y2X0 877 aa17.57■□□□□ 0.4
USH1C-205ENST00000527020 SCN5AQ14524 2016 aa17.57■□□□□ 0.4
USH1C-205ENST00000527020 CAPN8A6NHC0 703 aa17.56■□□□□ 0.4
USH1C-205ENST00000527020 E7ENX8 843 aa17.56■□□□□ 0.4
USH1C-205ENST00000527020 UBXN8O00124 270 aa17.56■□□□□ 0.4
USH1C-205ENST00000527020 SIX3O95343 332 aaPredicted RBP17.56■□□□□ 0.4
USH1C-205ENST00000527020 MT-CO1P00395 513 aa17.56■□□□□ 0.4
USH1C-205ENST00000527020 GALTP07902 379 aa17.56■□□□□ 0.4
USH1C-205ENST00000527020 ATXN3P54252 364 aaPredicted RBP17.56■□□□□ 0.4
USH1C-205ENST00000527020 RPS24P62847 133 aaKnown RBP17.56■□□□□ 0.4
USH1C-205ENST00000527020 SMARCB1Q12824 385 aa17.56■□□□□ 0.4
USH1C-205ENST00000527020 ADGRE1Q14246 886 aa17.56■□□□□ 0.4
USH1C-205ENST00000527020 REP15Q6BDI9 236 aa17.56■□□□□ 0.4
USH1C-205ENST00000527020 ZFP1Q6P2D0 407 aa17.56■□□□□ 0.4
USH1C-205ENST00000527020 FBXL19Q6PCT2 694 aa17.56■□□□□ 0.4
USH1C-205ENST00000527020 CRIPAKQ8N1N5 446 aa17.56■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 43 ms