RNA–Protein interactions for RNA: ENST00000525348.1

CD44-217, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 568 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-217ENST00000525348 SRCP12931 536 aa4□□□□□ -1.77
CD44-217ENST00000525348 DDIT3P35638 169 aa4□□□□□ -1.77
CD44-217ENST00000525348 MAPK9P45984 424 aa4□□□□□ -1.77
CD44-217ENST00000525348 RPP30P78346 268 aaKnown RBP4□□□□□ -1.77
CD44-217ENST00000525348 ECT2LQ008S8 904 aa4□□□□□ -1.77
CD44-217ENST00000525348 POU3F1Q03052 451 aaPredicted RBP4□□□□□ -1.77
CD44-217ENST00000525348 SLC20A2Q08357 652 aa4□□□□□ -1.77
CD44-217ENST00000525348 TNFAIP1Q13829 316 aa4□□□□□ -1.77
CD44-217ENST00000525348 CAMK1Q14012 370 aa4□□□□□ -1.77
CD44-217ENST00000525348 CCDC96Q2M329 555 aa4□□□□□ -1.77
CD44-217ENST00000525348 TCTN1Q2MV58 587 aa4□□□□□ -1.77
CD44-217ENST00000525348 UNQ6126/PRO20091Q6UXV3 157 aa4□□□□□ -1.77
CD44-217ENST00000525348 C9orf139Q6ZV77 190 aa4□□□□□ -1.77
CD44-217ENST00000525348 LINGO2Q7L985 606 aa4□□□□□ -1.77
CD44-217ENST00000525348 ODF3L1Q8IXM7 274 aa4□□□□□ -1.77
CD44-217ENST00000525348 ZCCHC9Q8N567 271 aaKnown RBP4□□□□□ -1.77
CD44-217ENST00000525348 KBTBD3Q8NAB2 608 aa4□□□□□ -1.77
CD44-217ENST00000525348 OR2AK2Q8NG84 335 aa4□□□□□ -1.77
CD44-217ENST00000525348 HUS1BQ8NHY5 278 aa4□□□□□ -1.77
CD44-217ENST00000525348 INPP4AQ96PE3 977 aaPredicted RBP4□□□□□ -1.77
CD44-217ENST00000525348 CSTL1Q9H114 145 aa4□□□□□ -1.77
CD44-217ENST00000525348 EVA1AQ9H8M9 152 aa4□□□□□ -1.77
CD44-217ENST00000525348 BPIFA1Q9NP55 256 aa4□□□□□ -1.77
CD44-217ENST00000525348 FBXO9Q9UK97 447 aaPredicted RBP4□□□□□ -1.77
CD44-217ENST00000525348 RCOR1Q9UKL0 485 aa4□□□□□ -1.77
CD44-217ENST00000525348 SCINQ9Y6U3 715 aa4□□□□□ -1.77
CD44-217ENST00000525348 SCRIBQ14160 1630 aa3.99□□□□□ -1.77
CD44-217ENST00000525348 A0A0G2JPF8 293 aa3.99□□□□□ -1.77
CD44-217ENST00000525348 TMEM202A6NGA9 273 aa3.99□□□□□ -1.77
CD44-217ENST00000525348 HNRNPCL3B7ZW38 293 aa3.99□□□□□ -1.77
CD44-217ENST00000525348 SNAP23O00161 211 aa3.99□□□□□ -1.77
CD44-217ENST00000525348 HNRNPCL1O60812 293 aaKnown RBP3.99□□□□□ -1.77
CD44-217ENST00000525348 SEC31AO94979 1220 aaKnown RBP3.99□□□□□ -1.77
CD44-217ENST00000525348 HNRNPCL4P0DMR1 293 aa3.99□□□□□ -1.77
CD44-217ENST00000525348 HLA-DOBP13765 273 aa3.99□□□□□ -1.77
CD44-217ENST00000525348 CD58P19256 250 aa3.99□□□□□ -1.77
CD44-217ENST00000525348 MAOAP21397 527 aa3.99□□□□□ -1.77
CD44-217ENST00000525348 DGKAP23743 735 aa3.99□□□□□ -1.77
CD44-217ENST00000525348 FUT6P51993 359 aa3.99□□□□□ -1.77
CD44-217ENST00000525348 ZNF132P52740 706 aa3.99□□□□□ -1.77
CD44-217ENST00000525348 GPR68Q15743 365 aa3.99□□□□□ -1.77
CD44-217ENST00000525348 BAK1Q16611 211 aa3.99□□□□□ -1.77
CD44-217ENST00000525348 HIST2H2ACQ16777 129 aaPredicted RBP3.99□□□□□ -1.77
CD44-217ENST00000525348 ALG11Q2TAA5 492 aa3.99□□□□□ -1.77
CD44-217ENST00000525348 CPLX2Q6PUV4 134 aaKnown RBP3.99□□□□□ -1.77
CD44-217ENST00000525348 ZNF354CQ86Y25 554 aa3.99□□□□□ -1.77
CD44-217ENST00000525348 EGFL6Q8IUX8 553 aa3.99□□□□□ -1.77
CD44-217ENST00000525348 FIG4Q92562 907 aa3.99□□□□□ -1.77
CD44-217ENST00000525348 RNF125Q96EQ8 232 aa3.99□□□□□ -1.77
CD44-217ENST00000525348 TMEM19Q96HH6 336 aa3.99□□□□□ -1.77
CD44-217ENST00000525348 SLC25A18Q9H1K4 315 aa3.99□□□□□ -1.77
CD44-217ENST00000525348 MMP25Q9NPA2 562 aa3.99□□□□□ -1.77
CD44-217ENST00000525348 A4GNTQ9UNA3 340 aa3.99□□□□□ -1.77
CD44-217ENST00000525348 ZNF711Q9Y462 761 aa3.99□□□□□ -1.77
CD44-217ENST00000525348 LRRFIP2Q9Y608 721 aaKnown RBP3.99□□□□□ -1.77
CD44-217ENST00000525348 TAF1P21675 1872 aa3.98□□□□□ -1.77
CD44-217ENST00000525348 KIF26BQ2KJY2 2108 aa3.98□□□□□ -1.77
CD44-217ENST00000525348 CGNL1Q0VF96 1302 aa3.98□□□□□ -1.77
CD44-217ENST00000525348 PDS5AQ29RF7 1337 aaKnown RBP3.98□□□□□ -1.77
CD44-217ENST00000525348 TNFSF14O43557 240 aa3.98□□□□□ -1.77
CD44-217ENST00000525348 FTCDO95954 541 aa3.98□□□□□ -1.77
CD44-217ENST00000525348 F9P00740 461 aa3.98□□□□□ -1.77
CD44-217ENST00000525348 AMD1P17707 334 aa3.98□□□□□ -1.77
CD44-217ENST00000525348 ABCD3P28288 659 aa3.98□□□□□ -1.77
CD44-217ENST00000525348 PPM1FP49593 454 aaPredicted RBP3.98□□□□□ -1.77
CD44-217ENST00000525348 IRX3P78415 501 aaPredicted RBP3.98□□□□□ -1.77
CD44-217ENST00000525348 RELQ04864 619 aaPredicted RBP3.98□□□□□ -1.77
CD44-217ENST00000525348 PTP4A2Q12974 167 aa3.98□□□□□ -1.77
CD44-217ENST00000525348 TMEM95Q3KNT9 176 aa3.98□□□□□ -1.77
CD44-217ENST00000525348 SLC45A4Q5BKX6 768 aa3.98□□□□□ -1.77
CD44-217ENST00000525348 GFI1BQ5VTD9 330 aa3.98□□□□□ -1.77
CD44-217ENST00000525348 SLC36A4Q6YBV0 504 aa3.98□□□□□ -1.77
CD44-217ENST00000525348 CCNI2Q6ZMN8 369 aaPredicted RBP3.98□□□□□ -1.77
CD44-217ENST00000525348 TAOK1Q7L7X3 1001 aa3.98□□□□□ -1.77
CD44-217ENST00000525348 RRM2BQ7LG56 351 aa3.98□□□□□ -1.77
CD44-217ENST00000525348 HAPLN4Q86UW8 402 aa3.98□□□□□ -1.77
CD44-217ENST00000525348 HEATR4Q86WZ0 1026 aa3.98□□□□□ -1.77
CD44-217ENST00000525348 CPXCR1Q8N123 301 aa3.98□□□□□ -1.77
CD44-217ENST00000525348 CIARTQ8N365 385 aaPredicted RBP3.98□□□□□ -1.77
CD44-217ENST00000525348 LNX1Q8TBB1 728 aaPredicted RBP3.98□□□□□ -1.77
CD44-217ENST00000525348 DUSP19Q8WTR2 217 aa3.98□□□□□ -1.77
CD44-217ENST00000525348 ST8SIA4Q92187 359 aa3.98□□□□□ -1.77
CD44-217ENST00000525348 NR4A3Q92570 626 aa3.98□□□□□ -1.77
CD44-217ENST00000525348 CD101Q93033 1021 aa3.98□□□□□ -1.77
CD44-217ENST00000525348 KLHL29Q96CT2 875 aa3.98□□□□□ -1.77
CD44-217ENST00000525348 KIF1BPQ96EK5 621 aa3.98□□□□□ -1.77
CD44-217ENST00000525348 PCYT2Q99447 389 aa3.98□□□□□ -1.77
CD44-217ENST00000525348 KXD1Q9BQD3 176 aa3.98□□□□□ -1.77
CD44-217ENST00000525348 VPS33BQ9H267 617 aa3.98□□□□□ -1.77
CD44-217ENST00000525348 TCF7L2Q9NQB0 619 aa3.98□□□□□ -1.77
CD44-217ENST00000525348 PPP1R14DQ9NXH3 145 aa3.98□□□□□ -1.77
CD44-217ENST00000525348 GJD2Q9UKL4 321 aa3.98□□□□□ -1.77
CD44-217ENST00000525348 SARDHQ9UL12 918 aa3.98□□□□□ -1.77
CD44-217ENST00000525348 ADAM18Q9Y3Q7 739 aa3.98□□□□□ -1.77
CD44-217ENST00000525348 PCDHAC2Q9Y5I4 1007 aa3.98□□□□□ -1.77
CD44-217ENST00000525348 RPS6KL1Q9Y6S9 549 aa3.98□□□□□ -1.77
CD44-217ENST00000525348 A0A0B4J293 547 aa3.97□□□□□ -1.77
CD44-217ENST00000525348 SEC14L5O43304 696 aa3.97□□□□□ -1.77
CD44-217ENST00000525348 METAP2P50579 478 aaKnown RBP eCLIP3.97□□□□□ -1.77
CD44-217ENST00000525348 HNRNPH2P55795 449 aaKnown RBP3.97□□□□□ -1.77
Retrieved 100 of 20,778 RNA–protein pairs in 23.6 ms