RNA–Protein interactions for RNA: ENST00000512820.5

LIMCH1-216, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,071 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-216ENST00000512820 TOP3AQ13472 1001 aaPredicted RBP8.42□□□□□ -1.06
LIMCH1-216ENST00000512820 GLYATQ6IB77 296 aa8.42□□□□□ -1.06
LIMCH1-216ENST00000512820 KIAA0930Q6ICG6 404 aaPredicted RBP8.42□□□□□ -1.06
LIMCH1-216ENST00000512820 AFTPHQ6ULP2 937 aa8.42□□□□□ -1.06
LIMCH1-216ENST00000512820 CLEC20AQ6ZU45 233 aa8.42□□□□□ -1.06
LIMCH1-216ENST00000512820 OR7A2PQ8NGA2 310 aa8.42□□□□□ -1.06
LIMCH1-216ENST00000512820 CANT1Q8WVQ1 401 aa8.42□□□□□ -1.06
LIMCH1-216ENST00000512820 RTP4Q96DX8 246 aa8.42□□□□□ -1.06
LIMCH1-216ENST00000512820 PHF12Q96QT6 1004 aa8.42□□□□□ -1.06
LIMCH1-216ENST00000512820 APOL4Q9BPW4 351 aa8.42□□□□□ -1.06
LIMCH1-216ENST00000512820 NFKBIZQ9BYH8 718 aa8.42□□□□□ -1.06
LIMCH1-216ENST00000512820 PDGFDQ9GZP0 370 aaPredicted RBP8.42□□□□□ -1.06
LIMCH1-216ENST00000512820 PALMDQ9NP74 551 aa8.42□□□□□ -1.06
LIMCH1-216ENST00000512820 C8orf4Q9NR00 106 aa8.42□□□□□ -1.06
LIMCH1-216ENST00000512820 KANSL3Q9P2N6 904 aa8.42□□□□□ -1.06
LIMCH1-216ENST00000512820 KLQ9UEF7 1012 aa8.42□□□□□ -1.06
LIMCH1-216ENST00000512820 C3orf18Q9UK00 162 aa8.42□□□□□ -1.06
LIMCH1-216ENST00000512820 ST3GAL5Q9UNP4 418 aa8.42□□□□□ -1.06
LIMCH1-216ENST00000512820 TBC1D30Q9Y2I9 924 aa8.42□□□□□ -1.06
LIMCH1-216ENST00000512820 ITGB4P16144 1822 aa8.42□□□□□ -1.06
LIMCH1-216ENST00000512820 DDX60Q8IY21 1712 aaKnown RBP8.42□□□□□ -1.06
LIMCH1-216ENST00000512820 C5orf58C9J3I9 102 aa8.41□□□□□ -1.06
LIMCH1-216ENST00000512820 PIP5K1BO14986 540 aa8.41□□□□□ -1.06
LIMCH1-216ENST00000512820 STBD1O95210 358 aa8.41□□□□□ -1.06
LIMCH1-216ENST00000512820 FGF1P05230 155 aa8.41□□□□□ -1.06
LIMCH1-216ENST00000512820 S100A3P33764 101 aa8.41□□□□□ -1.06
LIMCH1-216ENST00000512820 EPHX2P34913 555 aa8.41□□□□□ -1.06
LIMCH1-216ENST00000512820 CDH15P55291 814 aa8.41□□□□□ -1.06
LIMCH1-216ENST00000512820 LSM3P62310 102 aaKnown RBP8.41□□□□□ -1.06
LIMCH1-216ENST00000512820 DSC2Q02487 901 aa8.41□□□□□ -1.06
LIMCH1-216ENST00000512820 TLR1Q15399 786 aa8.41□□□□□ -1.06
LIMCH1-216ENST00000512820 SPATA19Q7Z5L4 167 aa8.41□□□□□ -1.06
LIMCH1-216ENST00000512820 RALGPS2Q86X27 583 aaPredicted RBP8.41□□□□□ -1.06
LIMCH1-216ENST00000512820 AADATQ8N5Z0 425 aa8.41□□□□□ -1.06
LIMCH1-216ENST00000512820 MOCOSQ96EN8 888 aa8.41□□□□□ -1.06
LIMCH1-216ENST00000512820 PPM1MQ96MI6 270 aa8.41□□□□□ -1.06
LIMCH1-216ENST00000512820 SLC25A51Q9H1U9 297 aa8.41□□□□□ -1.06
LIMCH1-216ENST00000512820 FAM105AQ9NUU6 356 aa8.41□□□□□ -1.06
LIMCH1-216ENST00000512820 TMEM161AQ9NX61 479 aa8.41□□□□□ -1.06
LIMCH1-216ENST00000512820 EURLQ9NYK6 297 aa8.41□□□□□ -1.06
LIMCH1-216ENST00000512820 USE1Q9NZ43 259 aa8.41□□□□□ -1.06
LIMCH1-216ENST00000512820 CNTN3Q9P232 1028 aa8.41□□□□□ -1.06
LIMCH1-216ENST00000512820 OPTCQ9UBM4 332 aa8.41□□□□□ -1.06
LIMCH1-216ENST00000512820 LSM7Q9UK45 103 aaKnown RBP8.41□□□□□ -1.06
LIMCH1-216ENST00000512820 E9PAM4 449 aa8.41□□□□□ -1.06
LIMCH1-216ENST00000512820 RECQL5O94762 991 aaPredicted RBP8.41□□□□□ -1.06
LIMCH1-216ENST00000512820 EDN1P05305 212 aa8.41□□□□□ -1.06
LIMCH1-216ENST00000512820 GPIP06744 558 aa8.41□□□□□ -1.06
LIMCH1-216ENST00000512820 HLA-DPA1P20036 260 aa8.41□□□□□ -1.06
LIMCH1-216ENST00000512820 GSSP48637 474 aa8.41□□□□□ -1.06
LIMCH1-216ENST00000512820 PRIM2P49643 509 aa8.41□□□□□ -1.06
LIMCH1-216ENST00000512820 ST13P50502 369 aaKnown RBP8.41□□□□□ -1.06
LIMCH1-216ENST00000512820 NAA20P61599 178 aa8.41□□□□□ -1.06
LIMCH1-216ENST00000512820 OR52E8Q6IFG1 317 aa8.41□□□□□ -1.06
LIMCH1-216ENST00000512820 TXNDC11Q6PKC3 985 aa8.41□□□□□ -1.06
LIMCH1-216ENST00000512820 GCNT7Q6ZNI0 430 aa8.41□□□□□ -1.06
LIMCH1-216ENST00000512820 FCRL5Q96RD9 977 aa8.41□□□□□ -1.06
LIMCH1-216ENST00000512820 ADAM2Q99965 735 aa8.41□□□□□ -1.06
LIMCH1-216ENST00000512820 SLC39A3Q9BRY0 314 aa8.41□□□□□ -1.06
LIMCH1-216ENST00000512820 ALG2Q9H553 416 aa8.41□□□□□ -1.06
LIMCH1-216ENST00000512820 SUCOQ9UBS9 1254 aaKnown RBP8.41□□□□□ -1.06
LIMCH1-216ENST00000512820 MAGEL2Q9UJ55 1249 aa8.41□□□□□ -1.06
LIMCH1-216ENST00000512820 FFAR3O14843 346 aa8.41□□□□□ -1.06
LIMCH1-216ENST00000512820 GPR42O15529 346 aa8.41□□□□□ -1.06
LIMCH1-216ENST00000512820 ZBTB14O43829 449 aa8.41□□□□□ -1.06
LIMCH1-216ENST00000512820 WDR47O94967 919 aa8.41□□□□□ -1.06
LIMCH1-216ENST00000512820 NCK1P16333 377 aa8.41□□□□□ -1.06
LIMCH1-216ENST00000512820 NNMTP40261 264 aa8.41□□□□□ -1.06
LIMCH1-216ENST00000512820 HALP42357 657 aa8.41□□□□□ -1.06
LIMCH1-216ENST00000512820 RHDQ02161 417 aa8.41□□□□□ -1.06
LIMCH1-216ENST00000512820 NIPAL4Q0D2K0 466 aa8.41□□□□□ -1.06
LIMCH1-216ENST00000512820 CTC1Q2NKJ3 1217 aa8.41□□□□□ -1.06
LIMCH1-216ENST00000512820 STEAP4Q687X5 459 aa8.41□□□□□ -1.06
LIMCH1-216ENST00000512820 ARHGAP36Q6ZRI8 547 aa8.41□□□□□ -1.06
LIMCH1-216ENST00000512820 ERI1Q8IV48 349 aaKnown RBP8.41□□□□□ -1.06
LIMCH1-216ENST00000512820 KBTBD2Q8IY47 623 aa8.41□□□□□ -1.06
LIMCH1-216ENST00000512820 TMEM132CQ8N3T6 1108 aa8.41□□□□□ -1.06
LIMCH1-216ENST00000512820 HM13Q8TCT9 377 aa8.41□□□□□ -1.06
LIMCH1-216ENST00000512820 IRGQQ8WZA9 623 aa8.41□□□□□ -1.06
LIMCH1-216ENST00000512820 SLC39A8Q9C0K1 460 aa8.41□□□□□ -1.06
LIMCH1-216ENST00000512820 ZFP14Q9HCL3 533 aa8.41□□□□□ -1.06
LIMCH1-216ENST00000512820 PREBQ9HCU5 417 aa8.41□□□□□ -1.06
LIMCH1-216ENST00000512820 BPIFA1Q9NP55 256 aa8.41□□□□□ -1.06
LIMCH1-216ENST00000512820 TOGARAM1Q9Y4F4 1720 aa8.41□□□□□ -1.06
LIMCH1-216ENST00000512820 A8MT66 165 aa8.41□□□□□ -1.06
LIMCH1-216ENST00000512820 SORBS2O94875 1100 aaKnown RBP8.41□□□□□ -1.06
LIMCH1-216ENST00000512820 KRT75O95678 551 aa8.41□□□□□ -1.06
LIMCH1-216ENST00000512820 HSMCR30P0CW71 290 aa8.41□□□□□ -1.06
LIMCH1-216ENST00000512820 IFNA8P32881 189 aa8.41□□□□□ -1.06
LIMCH1-216ENST00000512820 POLR2JP52435 117 aaKnown RBP8.41□□□□□ -1.06
LIMCH1-216ENST00000512820 RPL38P63173 70 aaKnown RBP8.41□□□□□ -1.06
LIMCH1-216ENST00000512820 MRPS6P82932 125 aaKnown RBP8.41□□□□□ -1.06
LIMCH1-216ENST00000512820 CLCQ05315 142 aa8.41□□□□□ -1.06
LIMCH1-216ENST00000512820 TTC23LQ6PF05 361 aa8.41□□□□□ -1.06
LIMCH1-216ENST00000512820 GPR142Q7Z601 462 aa8.41□□□□□ -1.06
LIMCH1-216ENST00000512820 MTFMTQ96DP5 389 aaKnown RBP8.41□□□□□ -1.06
LIMCH1-216ENST00000512820 FOPNLQ96NB1 174 aa8.41□□□□□ -1.06
LIMCH1-216ENST00000512820 BBS2Q9BXC9 721 aa8.41□□□□□ -1.06
LIMCH1-216ENST00000512820 ROGDIQ9GZN7 287 aa8.41□□□□□ -1.06
LIMCH1-216ENST00000512820 COL2A1P02458 1487 aaPredicted RBP8.4□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 23.8 ms