RNA–Protein interactions for RNA: ENST00000495039.1

VPS50-219, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 1 (best)

Gene VPS50, Length 1,115 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-219ENST00000495039 CHD1LQ86WJ1 897 aa3.76□□□□□ -1.81
VPS50-219ENST00000495039 TMEM219Q86XT9 240 aa3.76□□□□□ -1.81
VPS50-219ENST00000495039 HERC6Q8IVU3 1022 aa3.76□□□□□ -1.81
VPS50-219ENST00000495039 KLHDC9Q8NEP7 349 aa3.76□□□□□ -1.81
VPS50-219ENST00000495039 CEP70Q8NHQ1 597 aa3.76□□□□□ -1.81
VPS50-219ENST00000495039 GCC1Q96CN9 775 aa3.76□□□□□ -1.81
VPS50-219ENST00000495039 KTI12Q96EK9 354 aaPredicted RBP3.76□□□□□ -1.81
VPS50-219ENST00000495039 COG8Q96MW5 612 aa3.76□□□□□ -1.81
VPS50-219ENST00000495039 ATOH8Q96SQ7 321 aa3.76□□□□□ -1.81
VPS50-219ENST00000495039 ASCL2Q99929 193 aa3.76□□□□□ -1.81
VPS50-219ENST00000495039 KXD1Q9BQD3 176 aa3.76□□□□□ -1.81
VPS50-219ENST00000495039 POLR3GLQ9BT43 218 aa3.76□□□□□ -1.81
VPS50-219ENST00000495039 FSD1Q9BTV5 496 aa3.76□□□□□ -1.81
VPS50-219ENST00000495039 PCDH9Q9HC56 1237 aa3.76□□□□□ -1.81
VPS50-219ENST00000495039 MCM9Q9NXL9 1143 aa3.76□□□□□ -1.81
VPS50-219ENST00000495039 FAF1Q9UNN5 650 aaPredicted RBP3.76□□□□□ -1.81
VPS50-219ENST00000495039 RRP7AQ9Y3A4 280 aaKnown RBP3.76□□□□□ -1.81
VPS50-219ENST00000495039 BLOC1S5-TXNDC5H3BN57 136 aa3.75□□□□□ -1.81
VPS50-219ENST00000495039 MTA2O94776 668 aa3.75□□□□□ -1.81
VPS50-219ENST00000495039 TNNT1P13805 278 aa3.75□□□□□ -1.81
VPS50-219ENST00000495039 SRD5A1P18405 259 aa3.75□□□□□ -1.81
VPS50-219ENST00000495039 CD58P19256 250 aa3.75□□□□□ -1.81
VPS50-219ENST00000495039 CHATP28329 748 aa3.75□□□□□ -1.81
VPS50-219ENST00000495039 HOXA1P49639 335 aaPredicted RBP3.75□□□□□ -1.81
VPS50-219ENST00000495039 DSCR10P59022 87 aa3.75□□□□□ -1.81
VPS50-219ENST00000495039 TMEM95Q3KNT9 176 aa3.75□□□□□ -1.81
VPS50-219ENST00000495039 KRTAP13-3Q3SY46 172 aa3.75□□□□□ -1.81
VPS50-219ENST00000495039 FBXO43Q4G163 708 aa3.75□□□□□ -1.81
VPS50-219ENST00000495039 CTXN3Q4LDR2 81 aa3.75□□□□□ -1.81
VPS50-219ENST00000495039 ESCO2Q56NI9 601 aa3.75□□□□□ -1.81
VPS50-219ENST00000495039 SH2D4BQ5SQS7 431 aa3.75□□□□□ -1.81
VPS50-219ENST00000495039 SUSD1Q6UWL2 747 aa3.75□□□□□ -1.81
VPS50-219ENST00000495039 PARP16Q8N5Y8 322 aa3.75□□□□□ -1.81
VPS50-219ENST00000495039 PPM1EQ8WY54 764 aa3.75□□□□□ -1.81
VPS50-219ENST00000495039 RBM17Q96I25 401 aaKnown RBP3.75□□□□□ -1.81
VPS50-219ENST00000495039 CTDSP1Q9GZU7 261 aa3.75□□□□□ -1.81
VPS50-219ENST00000495039 FKRPQ9H9S5 495 aa3.75□□□□□ -1.81
VPS50-219ENST00000495039 RIC8AQ9NPQ8 531 aa3.75□□□□□ -1.81
VPS50-219ENST00000495039 RNF215Q9Y6U7 377 aa3.75□□□□□ -1.81
VPS50-219ENST00000495039 PDS5AQ29RF7 1337 aaKnown RBP3.74□□□□□ -1.81
VPS50-219ENST00000495039 STX16-NPEPL1H3BU86 382 aa3.74□□□□□ -1.81
VPS50-219ENST00000495039 EIF3FO00303 357 aaPredicted RBP3.74□□□□□ -1.81
VPS50-219ENST00000495039 STX16O14662 325 aa3.74□□□□□ -1.81
VPS50-219ENST00000495039 NPHP1O15259 732 aa3.74□□□□□ -1.81
VPS50-219ENST00000495039 ZNF8P17098 575 aaPredicted RBP3.74□□□□□ -1.81
VPS50-219ENST00000495039 CD72P21854 359 aa3.74□□□□□ -1.81
VPS50-219ENST00000495039 RYKP34925 604 aa3.74□□□□□ -1.81
VPS50-219ENST00000495039 MAPK9P45984 424 aa3.74□□□□□ -1.81
VPS50-219ENST00000495039 SEC61BP60468 96 aaKnown RBP3.74□□□□□ -1.81
VPS50-219ENST00000495039 IRX6P78412 446 aaPredicted RBP3.74□□□□□ -1.81
VPS50-219ENST00000495039 SLC12A1Q13621 1099 aa3.74□□□□□ -1.81
VPS50-219ENST00000495039 NEDD9Q14511 834 aa3.74□□□□□ -1.81
VPS50-219ENST00000495039 ANKRD1Q15327 319 aa3.74□□□□□ -1.81
VPS50-219ENST00000495039 SOWAHAQ2M3V2 549 aa3.74□□□□□ -1.81
VPS50-219ENST00000495039 LCE3EQ5T5B0 92 aa3.74□□□□□ -1.81
VPS50-219ENST00000495039 B3GNT6Q6ZMB0 384 aa3.74□□□□□ -1.81
VPS50-219ENST00000495039 ZNF852Q6ZMS4 543 aa3.74□□□□□ -1.81
VPS50-219ENST00000495039 KCTD8Q6ZWB6 473 aa3.74□□□□□ -1.81
VPS50-219ENST00000495039 LINS1Q8NG48 757 aa3.74□□□□□ -1.81
VPS50-219ENST00000495039 HCAR2Q8TDS4 363 aa3.74□□□□□ -1.81
VPS50-219ENST00000495039 GDPD5Q8WTR4 605 aa3.74□□□□□ -1.81
VPS50-219ENST00000495039 SLC20A1Q8WUM9 679 aa3.74□□□□□ -1.81
VPS50-219ENST00000495039 HSPH1Q92598 858 aa3.74□□□□□ -1.81
VPS50-219ENST00000495039 TTC12Q9H892 705 aaPredicted RBP3.74□□□□□ -1.81
VPS50-219ENST00000495039 RASSF1Q9NS23 344 aa3.74□□□□□ -1.81
VPS50-219ENST00000495039 DNAJC16Q9Y2G8 782 aa3.74□□□□□ -1.81
VPS50-219ENST00000495039 KRTAP16-1A8MUX0 517 aa3.73□□□□□ -1.81
VPS50-219ENST00000495039 GNL1P36915 607 aaPredicted RBP3.73□□□□□ -1.81
VPS50-219ENST00000495039 TERF1P54274 439 aa3.73□□□□□ -1.81
VPS50-219ENST00000495039 IRX1P78414 480 aaPredicted RBP3.73□□□□□ -1.81
VPS50-219ENST00000495039 RUNX2Q13950 521 aa3.73□□□□□ -1.81
VPS50-219ENST00000495039 HSP90AB4PQ58FF6 505 aa3.73□□□□□ -1.81
VPS50-219ENST00000495039 CBWD5Q5RIA9 395 aa3.73□□□□□ -1.81
VPS50-219ENST00000495039 TRNP1Q6NT89 227 aa3.73□□□□□ -1.81
VPS50-219ENST00000495039 IL20RBQ6UXL0 311 aa3.73□□□□□ -1.81
VPS50-219ENST00000495039 CYP26C1Q6V0L0 522 aa3.73□□□□□ -1.81
VPS50-219ENST00000495039 UBXN10Q96LJ8 280 aa3.73□□□□□ -1.81
VPS50-219ENST00000495039 TMEM30AQ9NV96 361 aa3.73□□□□□ -1.81
VPS50-219ENST00000495039 CISD1Q9NZ45 108 aaKnown RBP3.73□□□□□ -1.81
VPS50-219ENST00000495039 AMDHD2Q9Y303 409 aa3.73□□□□□ -1.81
VPS50-219ENST00000495039 GREB1LQ9C091 1923 aaPredicted RBP3.72□□□□□ -1.81
VPS50-219ENST00000495039 A0A0U1RQF3 1178 aa3.72□□□□□ -1.81
VPS50-219ENST00000495039 ANP32CO43423 234 aa3.72□□□□□ -1.81
VPS50-219ENST00000495039 CREB3O43889 395 aa3.72□□□□□ -1.81
VPS50-219ENST00000495039 ITGA2P17301 1181 aa3.72□□□□□ -1.81
VPS50-219ENST00000495039 ITGAXP20702 1163 aa3.72□□□□□ -1.81
VPS50-219ENST00000495039 SP100P23497 879 aaPredicted RBP3.72□□□□□ -1.81
VPS50-219ENST00000495039 HNF1BP35680 557 aa3.72□□□□□ -1.81
VPS50-219ENST00000495039 CSRP3P50461 194 aa3.72□□□□□ -1.81
VPS50-219ENST00000495039 CTF1Q16619 201 aa3.72□□□□□ -1.81
VPS50-219ENST00000495039 SPINK14Q6IE38 97 aa3.72□□□□□ -1.81
VPS50-219ENST00000495039 DENND1BQ6P3S1 775 aa3.72□□□□□ -1.81
VPS50-219ENST00000495039 KRTAP5-2Q701N4 177 aa3.72□□□□□ -1.81
VPS50-219ENST00000495039 PRSS45Q7RTY3 260 aa3.72□□□□□ -1.81
VPS50-219ENST00000495039 WDR63Q8IWG1 891 aa3.72□□□□□ -1.81
VPS50-219ENST00000495039 USP38Q8NB14 1042 aa3.72□□□□□ -1.81
VPS50-219ENST00000495039 GJC3Q8NFK1 279 aa3.72□□□□□ -1.81
VPS50-219ENST00000495039 ABTB1Q969K4 478 aaPredicted RBP3.72□□□□□ -1.81
VPS50-219ENST00000495039 LRR1Q96L50 414 aa3.72□□□□□ -1.81
VPS50-219ENST00000495039 CNGB3Q9NQW8 809 aa3.72□□□□□ -1.81
Retrieved 100 of 20,778 RNA–protein pairs in 21.1 ms