RNA–Protein interactions for RNA: ENST00000481409.1

USP39-215, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 3

Gene USP39, Length 447 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-215ENST00000481409 ZNF446Q9NWS9 450 aa10.18□□□□□ -0.78
USP39-215ENST00000481409 PKD2L2Q9NZM6 624 aa10.18□□□□□ -0.78
USP39-215ENST00000481409 IL17CQ9P0M4 197 aa10.18□□□□□ -0.78
USP39-215ENST00000481409 ZFATQ9P243 1243 aa10.18□□□□□ -0.78
USP39-215ENST00000481409 TXNDC16Q9P2K2 825 aa10.18□□□□□ -0.78
USP39-215ENST00000481409 FZD4Q9ULV1 537 aa10.18□□□□□ -0.78
USP39-215ENST00000481409 CORO1CQ9ULV4 474 aaPredicted RBP10.18□□□□□ -0.78
USP39-215ENST00000481409 C1orf232A0A0U1RR37 186 aa10.17□□□□□ -0.78
USP39-215ENST00000481409 AREL1O15033 823 aa10.17□□□□□ -0.78
USP39-215ENST00000481409 TSPAN6O43657 245 aa10.17□□□□□ -0.78
USP39-215ENST00000481409 IL1BP01584 269 aa10.17□□□□□ -0.78
USP39-215ENST00000481409 DNTTP04053 509 aa10.17□□□□□ -0.78
USP39-215ENST00000481409 PYGLP06737 847 aa10.17□□□□□ -0.78
USP39-215ENST00000481409 INHBAP08476 426 aa10.17□□□□□ -0.78
USP39-215ENST00000481409 ADRB3P13945 408 aa10.17□□□□□ -0.78
USP39-215ENST00000481409 OGNP20774 298 aaKnown RBP10.17□□□□□ -0.78
USP39-215ENST00000481409 NMBRP28336 390 aa10.17□□□□□ -0.78
USP39-215ENST00000481409 GKP32189 559 aa10.17□□□□□ -0.78
USP39-215ENST00000481409 SLC8A1P32418 973 aa10.17□□□□□ -0.78
USP39-215ENST00000481409 ABL2P42684 1182 aa10.17□□□□□ -0.78
USP39-215ENST00000481409 MSH2P43246 934 aa10.17□□□□□ -0.78
USP39-215ENST00000481409 ARCN1P48444 511 aaKnown RBP10.17□□□□□ -0.78
USP39-215ENST00000481409 COPAP53621 1224 aa10.17□□□□□ -0.78
USP39-215ENST00000481409 SEC13P55735 322 aa10.17□□□□□ -0.78
USP39-215ENST00000481409 CRADDP78560 199 aa10.17□□□□□ -0.78
USP39-215ENST00000481409 CREB5Q02930 508 aa10.17□□□□□ -0.78
USP39-215ENST00000481409 CNGA3Q16281 694 aa10.17□□□□□ -0.78
USP39-215ENST00000481409 TMEM52BQ4KMG9 183 aa10.17□□□□□ -0.78
USP39-215ENST00000481409 HSP90B2PQ58FF3 399 aa10.17□□□□□ -0.78
USP39-215ENST00000481409 HP1BP3Q5SSJ5 553 aaPredicted RBP10.17□□□□□ -0.78
USP39-215ENST00000481409 FAM182AQ5T1J6 154 aa10.17□□□□□ -0.78
USP39-215ENST00000481409 RNF187Q5TA31 235 aaPredicted RBP10.17□□□□□ -0.78
USP39-215ENST00000481409 GRTP1Q5TC63 336 aa10.17□□□□□ -0.78
USP39-215ENST00000481409 MRNIPQ6NTE8 343 aa10.17□□□□□ -0.78
USP39-215ENST00000481409 ESRP1Q6NXG1 681 aaKnown RBP10.17□□□□□ -0.78
USP39-215ENST00000481409 NEK5Q6P3R8 708 aa10.17□□□□□ -0.78
USP39-215ENST00000481409 ADGRD1Q6QNK2 874 aa10.17□□□□□ -0.78
USP39-215ENST00000481409 CERS6Q6ZMG9 384 aa10.17□□□□□ -0.78
USP39-215ENST00000481409 MAMSTRQ6ZN01 415 aa10.17□□□□□ -0.78
USP39-215ENST00000481409 PARS2Q7L3T8 475 aaKnown RBP10.17□□□□□ -0.78
USP39-215ENST00000481409 CYP2U1Q7Z449 544 aa10.17□□□□□ -0.78
USP39-215ENST00000481409 SDCCAG8Q86SQ7 713 aaPredicted RBP10.17□□□□□ -0.78
USP39-215ENST00000481409 NLRP8Q86W28 1048 aa10.17□□□□□ -0.78
USP39-215ENST00000481409 ZSWIM9Q86XI8 627 aa10.17□□□□□ -0.78
USP39-215ENST00000481409 MMAAQ8IVH4 418 aaKnown RBP10.17□□□□□ -0.78
USP39-215ENST00000481409 SFTPA1Q8IWL2 248 aa10.17□□□□□ -0.78
USP39-215ENST00000481409 OR13J1Q8NGT2 312 aa10.17□□□□□ -0.78
USP39-215ENST00000481409 RPLP0P6Q8NHW5 317 aa10.17□□□□□ -0.78
USP39-215ENST00000481409 SLC44A1Q8WWI5 657 aa10.17□□□□□ -0.78
USP39-215ENST00000481409 TBRG4Q969Z0 631 aaKnown RBP eCLIP10.17□□□□□ -0.78
USP39-215ENST00000481409 MTBPQ96DY7 904 aa10.17□□□□□ -0.78
USP39-215ENST00000481409 CDKN2AIPNLQ96HQ2 116 aa10.17□□□□□ -0.78
USP39-215ENST00000481409 CPNE1Q99829 537 aa10.17□□□□□ -0.78
USP39-215ENST00000481409 SH3GL2Q99962 352 aa10.17□□□□□ -0.78
USP39-215ENST00000481409 DHRS4Q9BTZ2 278 aa10.17□□□□□ -0.78
USP39-215ENST00000481409 PLAC1Q9HBJ0 212 aa10.17□□□□□ -0.78
USP39-215ENST00000481409 CD248Q9HCU0 757 aa10.17□□□□□ -0.78
USP39-215ENST00000481409 C20orf96Q9NUD7 363 aaPredicted RBP10.17□□□□□ -0.78
USP39-215ENST00000481409 PIH1D1Q9NWS0 290 aaKnown RBP10.17□□□□□ -0.78
USP39-215ENST00000481409 SENP1Q9P0U3 644 aa10.17□□□□□ -0.78
USP39-215ENST00000481409 PSMC3IPQ9P2W1 217 aaPredicted RBP10.17□□□□□ -0.78
USP39-215ENST00000481409 LGALS13Q9UHV8 139 aa10.17□□□□□ -0.78
USP39-215ENST00000481409 NCKAP1Q9Y2A7 1128 aa10.17□□□□□ -0.78
USP39-215ENST00000481409 SPO11Q9Y5K1 396 aa10.17□□□□□ -0.78
USP39-215ENST00000481409 ARL5AQ9Y689 179 aa10.17□□□□□ -0.78
USP39-215ENST00000481409 TCF20Q9UGU0 1960 aaKnown RBP10.17□□□□□ -0.78
USP39-215ENST00000481409 IQANK1A0A1B0GTG1 560 aa10.16□□□□□ -0.78
USP39-215ENST00000481409 A0A1W2PQF6 199 aa10.16□□□□□ -0.78
USP39-215ENST00000481409 NPIPB15A6NHN6 443 aaPredicted RBP10.16□□□□□ -0.78
USP39-215ENST00000481409 GOLGA8KD6RF30 607 aa10.16□□□□□ -0.78
USP39-215ENST00000481409 ADAM23O75077 832 aa10.16□□□□□ -0.78
USP39-215ENST00000481409 KRT37O76014 449 aa10.16□□□□□ -0.78
USP39-215ENST00000481409 KRT38O76015 456 aa10.16□□□□□ -0.78
USP39-215ENST00000481409 VAPBO95292 243 aa10.16□□□□□ -0.78
USP39-215ENST00000481409 C1QAP02745 245 aa10.16□□□□□ -0.78
USP39-215ENST00000481409 MMP12P39900 470 aa10.16□□□□□ -0.78
USP39-215ENST00000481409 GP5P40197 560 aa10.16□□□□□ -0.78
USP39-215ENST00000481409 STC1P52823 247 aa10.16□□□□□ -0.78
USP39-215ENST00000481409 RPS14P62263 151 aaKnown RBP10.16□□□□□ -0.78
USP39-215ENST00000481409 ZNF844Q08AG5 666 aa10.16□□□□□ -0.78
USP39-215ENST00000481409 MTM1Q13496 603 aa10.16□□□□□ -0.78
USP39-215ENST00000481409 ITGA9Q13797 1035 aa10.16□□□□□ -0.78
USP39-215ENST00000481409 AGERQ15109 404 aa10.16□□□□□ -0.78
USP39-215ENST00000481409 CRY1Q16526 586 aa10.16□□□□□ -0.78
USP39-215ENST00000481409 KBTBD12Q3ZCT8 623 aa10.16□□□□□ -0.78
USP39-215ENST00000481409 GPR33Q49SQ1 333 aa10.16□□□□□ -0.78
USP39-215ENST00000481409 CEP85LQ5SZL2 805 aa10.16□□□□□ -0.78
USP39-215ENST00000481409 AGBL2Q5U5Z8 902 aa10.16□□□□□ -0.78
USP39-215ENST00000481409 NEPROQ6NW34 567 aa10.16□□□□□ -0.78
USP39-215ENST00000481409 CRTC1Q6UUV9 634 aa10.16□□□□□ -0.78
USP39-215ENST00000481409 ZNF765Q7L2R6 523 aa10.16□□□□□ -0.78
USP39-215ENST00000481409 LYSMD3Q7Z3D4 306 aa10.16□□□□□ -0.78
USP39-215ENST00000481409 TMPRSS6Q8IU80 811 aa10.16□□□□□ -0.78
USP39-215ENST00000481409 ZNF366Q8N895 744 aa10.16□□□□□ -0.78
USP39-215ENST00000481409 OR4K2Q8NGD2 314 aa10.16□□□□□ -0.78
USP39-215ENST00000481409 OR4L1Q8NH43 312 aa10.16□□□□□ -0.78
USP39-215ENST00000481409 PBXIP1Q96AQ6 731 aa10.16□□□□□ -0.78
USP39-215ENST00000481409 CLDN23Q96B33 292 aa10.16□□□□□ -0.78
USP39-215ENST00000481409 FCRL3Q96P31 734 aaPredicted RBP10.16□□□□□ -0.78
USP39-215ENST00000481409 PHF12Q96QT6 1004 aa10.16□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms