RNA–Protein interactions for RNA: ENST00000476085.1

MSH5-SAPCD1-205, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS ALT2 TSL 2

Gene MSH5-SAPCD1, Length 950 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-205ENST00000476085 NR1D2Q14995 579 aa12.27□□□□□ -0.45
MSH5-SAPCD1-205ENST00000476085 CNGA3Q16281 694 aa12.27□□□□□ -0.45
MSH5-SAPCD1-205ENST00000476085 RALGPS1Q5JS13 557 aa12.27□□□□□ -0.45
MSH5-SAPCD1-205ENST00000476085 CFAP58Q5T655 872 aa12.27□□□□□ -0.45
MSH5-SAPCD1-205ENST00000476085 TMPRSS9Q7Z410 1059 aa12.27□□□□□ -0.45
MSH5-SAPCD1-205ENST00000476085 TEX26Q8N6G2 289 aa12.27□□□□□ -0.45
MSH5-SAPCD1-205ENST00000476085 CCL4L1Q8NHW4 92 aa12.27□□□□□ -0.45
MSH5-SAPCD1-205ENST00000476085 TEKT4Q8WW24 435 aa12.27□□□□□ -0.45
MSH5-SAPCD1-205ENST00000476085 ZNF653Q96CK0 615 aa12.27□□□□□ -0.45
MSH5-SAPCD1-205ENST00000476085 SCRN2Q96FV2 425 aa12.27□□□□□ -0.45
MSH5-SAPCD1-205ENST00000476085 SCARF2Q96GP6 870 aaPredicted RBP12.27□□□□□ -0.45
MSH5-SAPCD1-205ENST00000476085 CSPG4P5Q96PW8 444 aa12.27□□□□□ -0.45
MSH5-SAPCD1-205ENST00000476085 MCCC1Q96RQ3 725 aaPredicted RBP12.27□□□□□ -0.45
MSH5-SAPCD1-205ENST00000476085 FRMD8Q9BZ67 464 aaPredicted RBP12.27□□□□□ -0.45
MSH5-SAPCD1-205ENST00000476085 ZWILCHQ9H900 591 aa12.27□□□□□ -0.45
MSH5-SAPCD1-205ENST00000476085 NOD2Q9HC29 1040 aa12.27□□□□□ -0.45
MSH5-SAPCD1-205ENST00000476085 MRPL47Q9HD33 250 aaKnown RBP12.27□□□□□ -0.45
MSH5-SAPCD1-205ENST00000476085 KCTD5Q9NXV2 234 aa12.27□□□□□ -0.45
MSH5-SAPCD1-205ENST00000476085 PCDHGC4Q9Y5F7 938 aa12.27□□□□□ -0.45
MSH5-SAPCD1-205ENST00000476085 PRSS38A1L453 326 aa12.26□□□□□ -0.45
MSH5-SAPCD1-205ENST00000476085 A8MX80 341 aa12.26□□□□□ -0.45
MSH5-SAPCD1-205ENST00000476085 H3BRJ5 948 aa12.26□□□□□ -0.45
MSH5-SAPCD1-205ENST00000476085 PSMD11O00231 422 aa12.26□□□□□ -0.45
MSH5-SAPCD1-205ENST00000476085 NVLO15381 856 aaKnown RBP12.26□□□□□ -0.45
MSH5-SAPCD1-205ENST00000476085 B4GAT1O43505 415 aa12.26□□□□□ -0.45
MSH5-SAPCD1-205ENST00000476085 FZD6O60353 706 aa12.26□□□□□ -0.45
MSH5-SAPCD1-205ENST00000476085 RPLP0P05388 317 aaKnown RBP12.26□□□□□ -0.45
MSH5-SAPCD1-205ENST00000476085 CEACAM5P06731 702 aa12.26□□□□□ -0.45
MSH5-SAPCD1-205ENST00000476085 MYCLP1P12525 358 aaPredicted RBP12.26□□□□□ -0.45
MSH5-SAPCD1-205ENST00000476085 LHCGRP22888 699 aa12.26□□□□□ -0.45
MSH5-SAPCD1-205ENST00000476085 KELP23276 732 aa12.26□□□□□ -0.45
MSH5-SAPCD1-205ENST00000476085 SLC5A2P31639 672 aa12.26□□□□□ -0.45
MSH5-SAPCD1-205ENST00000476085 ARSEP51690 589 aa12.26□□□□□ -0.45
MSH5-SAPCD1-205ENST00000476085 INHBCP55103 352 aa12.26□□□□□ -0.45
MSH5-SAPCD1-205ENST00000476085 DPTQ07507 201 aa12.26□□□□□ -0.45
MSH5-SAPCD1-205ENST00000476085 TRAF2Q12933 501 aa12.26□□□□□ -0.45
MSH5-SAPCD1-205ENST00000476085 PIGHQ14442 188 aaPredicted RBP12.26□□□□□ -0.45
MSH5-SAPCD1-205ENST00000476085 TCEA2Q15560 299 aa12.26□□□□□ -0.45
MSH5-SAPCD1-205ENST00000476085 FILIP1LQ4L180 1135 aa12.26□□□□□ -0.45
MSH5-SAPCD1-205ENST00000476085 C14orf28Q4W4Y0 310 aa12.26□□□□□ -0.45
MSH5-SAPCD1-205ENST00000476085 ALG1LQ6GMV1 187 aa12.26□□□□□ -0.45
MSH5-SAPCD1-205ENST00000476085 RAB11FIP2Q7L804 512 aa12.26□□□□□ -0.45
MSH5-SAPCD1-205ENST00000476085 ZNF438Q7Z4V0 828 aa12.26□□□□□ -0.45
MSH5-SAPCD1-205ENST00000476085 SPRED1Q7Z699 444 aa12.26□□□□□ -0.45
MSH5-SAPCD1-205ENST00000476085 TECPR1Q7Z6L1 1165 aa12.26□□□□□ -0.45
MSH5-SAPCD1-205ENST00000476085 TAF8Q7Z7C8 310 aa12.26□□□□□ -0.45
MSH5-SAPCD1-205ENST00000476085 CCNJLQ8IV13 435 aa12.26□□□□□ -0.45
MSH5-SAPCD1-205ENST00000476085 SLITRK4Q8IW52 837 aa12.26□□□□□ -0.45
MSH5-SAPCD1-205ENST00000476085 FBXO39Q8N4B4 442 aa12.26□□□□□ -0.45
MSH5-SAPCD1-205ENST00000476085 FAM46DQ8NEK8 389 aa12.26□□□□□ -0.45
MSH5-SAPCD1-205ENST00000476085 PIH1D2Q8WWB5 315 aa12.26□□□□□ -0.45
MSH5-SAPCD1-205ENST00000476085 SYN2Q92777 582 aaPredicted RBP12.26□□□□□ -0.45
MSH5-SAPCD1-205ENST00000476085 TRIM11Q96F44 468 aa12.26□□□□□ -0.45
MSH5-SAPCD1-205ENST00000476085 DTD2Q96FN9 168 aa12.26□□□□□ -0.45
MSH5-SAPCD1-205ENST00000476085 TMEM74Q96NL1 305 aa12.26□□□□□ -0.45
MSH5-SAPCD1-205ENST00000476085 FOXP3Q9BZS1 431 aa12.26□□□□□ -0.45
MSH5-SAPCD1-205ENST00000476085 SEMA4CQ9C0C4 833 aa12.26□□□□□ -0.45
MSH5-SAPCD1-205ENST00000476085 WDR26Q9H7D7 661 aa12.26□□□□□ -0.45
MSH5-SAPCD1-205ENST00000476085 PCDH18Q9HCL0 1135 aa12.26□□□□□ -0.45
MSH5-SAPCD1-205ENST00000476085 CYP4F12Q9HCS2 524 aa12.26□□□□□ -0.45
MSH5-SAPCD1-205ENST00000476085 SPATS2LQ9NUQ6 558 aaKnown RBP12.26□□□□□ -0.45
MSH5-SAPCD1-205ENST00000476085 PHTF1Q9UMS5 762 aa12.26□□□□□ -0.45
MSH5-SAPCD1-205ENST00000476085 RNF215Q9Y6U7 377 aa12.26□□□□□ -0.45
MSH5-SAPCD1-205ENST00000476085 TLN1Q9Y490 2541 aaKnown RBP12.26□□□□□ -0.45
MSH5-SAPCD1-205ENST00000476085 A0A1W2PQJ5 194 aa12.25□□□□□ -0.45
MSH5-SAPCD1-205ENST00000476085 PDE2AO00408 941 aaPredicted RBP12.25□□□□□ -0.45
MSH5-SAPCD1-205ENST00000476085 PGLSO95336 258 aa12.25□□□□□ -0.45
MSH5-SAPCD1-205ENST00000476085 SOD1P00441 154 aa12.25□□□□□ -0.45
MSH5-SAPCD1-205ENST00000476085 CYP1A2P05177 515 aa12.25□□□□□ -0.45
MSH5-SAPCD1-205ENST00000476085 FGF1P05230 155 aa12.25□□□□□ -0.45
MSH5-SAPCD1-205ENST00000476085 PLA2G2AP14555 144 aa12.25□□□□□ -0.45
MSH5-SAPCD1-205ENST00000476085 CCNB1P14635 433 aa12.25□□□□□ -0.45
MSH5-SAPCD1-205ENST00000476085 VIPR1P32241 457 aa12.25□□□□□ -0.45
MSH5-SAPCD1-205ENST00000476085 ARL4AP40617 200 aa12.25□□□□□ -0.45
MSH5-SAPCD1-205ENST00000476085 ZNF165P49910 485 aa12.25□□□□□ -0.45
MSH5-SAPCD1-205ENST00000476085 ACOX1Q15067 660 aa12.25□□□□□ -0.45
MSH5-SAPCD1-205ENST00000476085 PTPRRQ15256 657 aa12.25□□□□□ -0.45
MSH5-SAPCD1-205ENST00000476085 TSR1Q2NL82 804 aaKnown RBP12.25□□□□□ -0.45
MSH5-SAPCD1-205ENST00000476085 SMTNL2Q2TAL5 461 aa12.25□□□□□ -0.45
MSH5-SAPCD1-205ENST00000476085 SPECC1LQ69YQ0 1117 aa12.25□□□□□ -0.45
MSH5-SAPCD1-205ENST00000476085 TMCO3Q6UWJ1 677 aa12.25□□□□□ -0.45
MSH5-SAPCD1-205ENST00000476085 HSD11B1LQ7Z5J1 315 aa12.25□□□□□ -0.45
MSH5-SAPCD1-205ENST00000476085 NLRP8Q86W28 1048 aa12.25□□□□□ -0.45
MSH5-SAPCD1-205ENST00000476085 LRRC49Q8IUZ0 686 aa12.25□□□□□ -0.45
MSH5-SAPCD1-205ENST00000476085 PTCD2Q8WV60 388 aaKnown RBP12.25□□□□□ -0.45
MSH5-SAPCD1-205ENST00000476085 B3GNT4Q9C0J1 378 aa12.25□□□□□ -0.45
MSH5-SAPCD1-205ENST00000476085 STAU2Q9NUL3 570 aaKnown RBP eCLIP12.25□□□□□ -0.45
MSH5-SAPCD1-205ENST00000476085 TRNAU1APQ9NX07 287 aaKnown RBP12.25□□□□□ -0.45
MSH5-SAPCD1-205ENST00000476085 RCOR3Q9P2K3 495 aaPredicted RBP12.25□□□□□ -0.45
MSH5-SAPCD1-205ENST00000476085 LRIT1Q9P2V4 623 aa12.25□□□□□ -0.45
MSH5-SAPCD1-205ENST00000476085 MYO1AQ9UBC5 1043 aa12.25□□□□□ -0.45
MSH5-SAPCD1-205ENST00000476085 ATXN7L1Q9ULK2 861 aaPredicted RBP12.25□□□□□ -0.45
MSH5-SAPCD1-205ENST00000476085 NENFQ9UMX5 172 aa12.25□□□□□ -0.45
MSH5-SAPCD1-205ENST00000476085 SLC17A4Q9Y2C5 497 aa12.25□□□□□ -0.45
MSH5-SAPCD1-205ENST00000476085 BZW2Q9Y6E2 419 aaKnown RBP12.25□□□□□ -0.45
MSH5-SAPCD1-205ENST00000476085 SDK2Q58EX2 2172 aa12.25□□□□□ -0.45
MSH5-SAPCD1-205ENST00000476085 CAPN8A6NHC0 703 aa12.24□□□□□ -0.45
MSH5-SAPCD1-205ENST00000476085 NPIPB15A6NHN6 443 aaPredicted RBP12.24□□□□□ -0.45
MSH5-SAPCD1-205ENST00000476085 PDHA1P08559 390 aa12.24□□□□□ -0.45
MSH5-SAPCD1-205ENST00000476085 HGFP14210 728 aa12.24□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 22.3 ms