RNA–Protein interactions for RNA: ENST00000448833.5

VPS41-208, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 1 (best)

Gene VPS41, Length 711 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-208ENST00000448833 FBXO39Q8N4B4 442 aa7.09□□□□□ -1.27
VPS41-208ENST00000448833 ATPAF2Q8N5M1 289 aa7.09□□□□□ -1.27
VPS41-208ENST00000448833 NIPA2Q8N8Q9 360 aa7.09□□□□□ -1.27
VPS41-208ENST00000448833 ZSCAN1Q8NBB4 408 aa7.09□□□□□ -1.27
VPS41-208ENST00000448833 GPR156Q8NFN8 814 aa7.09□□□□□ -1.27
VPS41-208ENST00000448833 PDCD6IPQ8WUM4 868 aaKnown RBP7.09□□□□□ -1.27
VPS41-208ENST00000448833 FATE1Q969F0 183 aa7.09□□□□□ -1.27
VPS41-208ENST00000448833 FUBP1Q96AE4 644 aaKnown RBP7.09□□□□□ -1.27
VPS41-208ENST00000448833 CCDC74AQ96AQ1 378 aa7.09□□□□□ -1.27
VPS41-208ENST00000448833 NUS1Q96E22 293 aa7.09□□□□□ -1.27
VPS41-208ENST00000448833 SCRN2Q96FV2 425 aa7.09□□□□□ -1.27
VPS41-208ENST00000448833 NAF1Q96HR8 494 aaKnown RBP7.09□□□□□ -1.27
VPS41-208ENST00000448833 KCTD15Q96SI1 283 aaPredicted RBP7.09□□□□□ -1.27
VPS41-208ENST00000448833 CMKLR1Q99788 373 aa7.09□□□□□ -1.27
VPS41-208ENST00000448833 DPYSL5Q9BPU6 564 aa7.09□□□□□ -1.27
VPS41-208ENST00000448833 ANP32EQ9BTT0 268 aa7.09□□□□□ -1.27
VPS41-208ENST00000448833 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP7.09□□□□□ -1.27
VPS41-208ENST00000448833 GSDMCQ9BYG8 508 aa7.09□□□□□ -1.27
VPS41-208ENST00000448833 KRTAP3-3Q9BYR6 98 aa7.09□□□□□ -1.27
VPS41-208ENST00000448833 KRTAP3-2Q9BYR7 98 aa7.09□□□□□ -1.27
VPS41-208ENST00000448833 TCEAL2Q9H3H9 227 aaPredicted RBP7.09□□□□□ -1.27
VPS41-208ENST00000448833 LRRN3Q9H3W5 708 aa7.09□□□□□ -1.27
VPS41-208ENST00000448833 SYNDIG1Q9H7V2 258 aa7.09□□□□□ -1.27
VPS41-208ENST00000448833 GPATCH2LQ9NWQ4 482 aa7.09□□□□□ -1.27
VPS41-208ENST00000448833 TRNAU1APQ9NX07 287 aaKnown RBP7.09□□□□□ -1.27
VPS41-208ENST00000448833 TAS2R14Q9NYV8 317 aa7.09□□□□□ -1.27
VPS41-208ENST00000448833 SIRPGQ9P1W8 387 aa7.09□□□□□ -1.27
VPS41-208ENST00000448833 LRIT1Q9P2V4 623 aa7.09□□□□□ -1.27
VPS41-208ENST00000448833 MYO1AQ9UBC5 1043 aa7.09□□□□□ -1.27
VPS41-208ENST00000448833 ACSL6Q9UKU0 697 aa7.09□□□□□ -1.27
VPS41-208ENST00000448833 PCDHB11Q9Y5F2 797 aa7.09□□□□□ -1.27
VPS41-208ENST00000448833 GCN1Q92616 2671 aaKnown RBP7.08□□□□□ -1.28
VPS41-208ENST00000448833 PRSS38A1L453 326 aa7.08□□□□□ -1.28
VPS41-208ENST00000448833 TMEM202A6NGA9 273 aa7.08□□□□□ -1.28
VPS41-208ENST00000448833 RHPN2P1A8MT19 583 aa7.08□□□□□ -1.28
VPS41-208ENST00000448833 D6RAR5 112 aa7.08□□□□□ -1.28
VPS41-208ENST00000448833 GOLGA6L19H0YKK7 550 aa7.08□□□□□ -1.28
VPS41-208ENST00000448833 DDX3XO00571 662 aaKnown RBP eCLIP7.08□□□□□ -1.28
VPS41-208ENST00000448833 TRAFD1O14545 582 aaPredicted RBP7.08□□□□□ -1.28
VPS41-208ENST00000448833 MAFKO60675 156 aa7.08□□□□□ -1.28
VPS41-208ENST00000448833 CPNE6O95741 557 aa7.08□□□□□ -1.28
VPS41-208ENST00000448833 RPLP0P05388 317 aaKnown RBP7.08□□□□□ -1.28
VPS41-208ENST00000448833 SFTPCP11686 197 aa7.08□□□□□ -1.28
VPS41-208ENST00000448833 CCNB1P14635 433 aa7.08□□□□□ -1.28
VPS41-208ENST00000448833 ZNF30P17039 623 aa7.08□□□□□ -1.28
VPS41-208ENST00000448833 MX2P20592 715 aa7.08□□□□□ -1.28
VPS41-208ENST00000448833 PTMSP20962 102 aa7.08□□□□□ -1.28
VPS41-208ENST00000448833 MMP13P45452 471 aa7.08□□□□□ -1.28
VPS41-208ENST00000448833 RPL26P61254 145 aaKnown RBP7.08□□□□□ -1.28
VPS41-208ENST00000448833 CCL7P80098 99 aa7.08□□□□□ -1.28
VPS41-208ENST00000448833 SKOR1P84550 965 aa7.08□□□□□ -1.28
VPS41-208ENST00000448833 ZBED6P86452 979 aa7.08□□□□□ -1.28
VPS41-208ENST00000448833 CFHR1Q03591 330 aa7.08□□□□□ -1.28
VPS41-208ENST00000448833 DPTQ07507 201 aa7.08□□□□□ -1.28
VPS41-208ENST00000448833 SLC10A7Q0GE19 358 aa7.08□□□□□ -1.28
VPS41-208ENST00000448833 RALGDSQ12967 914 aa7.08□□□□□ -1.28
VPS41-208ENST00000448833 KRT81Q14533 505 aa7.08□□□□□ -1.28
VPS41-208ENST00000448833 PDK2Q15119 407 aa7.08□□□□□ -1.28
VPS41-208ENST00000448833 CA9Q16790 459 aa7.08□□□□□ -1.28
VPS41-208ENST00000448833 TDRD12Q587J7 1177 aaKnown RBP7.08□□□□□ -1.28
VPS41-208ENST00000448833 CERCAMQ5T4B2 595 aa7.08□□□□□ -1.28
VPS41-208ENST00000448833 ARMC12Q5T9G4 340 aa7.08□□□□□ -1.28
VPS41-208ENST00000448833 ARHGAP40Q5TG30 622 aa7.08□□□□□ -1.28
VPS41-208ENST00000448833 CRTC1Q6UUV9 634 aa7.08□□□□□ -1.28
VPS41-208ENST00000448833 ARFGAP1Q8N6T3 406 aa7.08□□□□□ -1.28
VPS41-208ENST00000448833 KYQ8NBH2 561 aa7.08□□□□□ -1.28
VPS41-208ENST00000448833 NETO2Q8NC67 525 aa7.08□□□□□ -1.28
VPS41-208ENST00000448833 CCDC112Q8NEF3 446 aa7.08□□□□□ -1.28
VPS41-208ENST00000448833 GPBAR1Q8TDU6 330 aa7.08□□□□□ -1.28
VPS41-208ENST00000448833 HSPH1Q92598 858 aa7.08□□□□□ -1.28
VPS41-208ENST00000448833 CRELD1Q96HD1 420 aa7.08□□□□□ -1.28
VPS41-208ENST00000448833 COQ10AQ96MF6 247 aa7.08□□□□□ -1.28
VPS41-208ENST00000448833 BBC3Q96PG8 261 aaPredicted RBP7.08□□□□□ -1.28
VPS41-208ENST00000448833 CSPG4P5Q96PW8 444 aa7.08□□□□□ -1.28
VPS41-208ENST00000448833 CCNL2Q96S94 520 aaPredicted RBP7.08□□□□□ -1.28
VPS41-208ENST00000448833 PEBP4Q96S96 227 aa7.08□□□□□ -1.28
VPS41-208ENST00000448833 MGME1Q9BQP7 344 aa7.08□□□□□ -1.28
VPS41-208ENST00000448833 TEX101Q9BY14 249 aa7.08□□□□□ -1.28
VPS41-208ENST00000448833 POLR1EQ9GZS1 481 aaKnown RBP7.08□□□□□ -1.28
VPS41-208ENST00000448833 CDH19Q9H159 772 aa7.08□□□□□ -1.28
VPS41-208ENST00000448833 EPB41L5Q9HCM4 733 aa7.08□□□□□ -1.28
VPS41-208ENST00000448833 CYP4F12Q9HCS2 524 aa7.08□□□□□ -1.28
VPS41-208ENST00000448833 STAU2Q9NUL3 570 aaKnown RBP eCLIP7.08□□□□□ -1.28
VPS41-208ENST00000448833 B4GALT6Q9UBX8 382 aa7.08□□□□□ -1.28
VPS41-208ENST00000448833 MOSPD1Q9UJG1 213 aa7.08□□□□□ -1.28
VPS41-208ENST00000448833 ATXN7L1Q9ULK2 861 aaPredicted RBP7.08□□□□□ -1.28
VPS41-208ENST00000448833 RPL26L1Q9UNX3 145 aaKnown RBP7.08□□□□□ -1.28
VPS41-208ENST00000448833 LUC7L2Q9Y383 392 aaKnown RBP7.08□□□□□ -1.28
VPS41-208ENST00000448833 PPIL1Q9Y3C6 166 aa7.08□□□□□ -1.28
VPS41-208ENST00000448833 PCDHGC4Q9Y5F7 938 aa7.08□□□□□ -1.28
VPS41-208ENST00000448833 K7ENP7 123 aa7.07□□□□□ -1.28
VPS41-208ENST00000448833 GPR37O15354 613 aa7.07□□□□□ -1.28
VPS41-208ENST00000448833 HEXIM1O94992 359 aaKnown RBP7.07□□□□□ -1.28
VPS41-208ENST00000448833 PGLSO95336 258 aa7.07□□□□□ -1.28
VPS41-208ENST00000448833 IVLP07476 585 aa7.07□□□□□ -1.28
VPS41-208ENST00000448833 KRT7P08729 469 aa7.07□□□□□ -1.28
VPS41-208ENST00000448833 NUDT7P0C024 238 aa7.07□□□□□ -1.28
VPS41-208ENST00000448833 RARAP10276 462 aa7.07□□□□□ -1.28
VPS41-208ENST00000448833 LIPCP11150 499 aa7.07□□□□□ -1.28
VPS41-208ENST00000448833 CR2P20023 1033 aa7.07□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms