RNA–Protein interactions for RNA: ENST00000423058.6

SCN1A-204, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SCN1A, Length 8,191 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-204ENST00000423058 FNIP1Q8TF40 1166 aa6.87□□□□□ -1.31
SCN1A-204ENST00000423058 DNASE1L2Q92874 299 aa6.87□□□□□ -1.31
SCN1A-204ENST00000423058 RBM18Q96H35 190 aaKnown RBP6.87□□□□□ -1.31
SCN1A-204ENST00000423058 MTF2Q9Y483 593 aaPredicted RBP6.87□□□□□ -1.31
SCN1A-204ENST00000423058 GMPPBQ9Y5P6 360 aa6.87□□□□□ -1.31
SCN1A-204ENST00000423058 PTPRJQ12913 1337 aa6.86□□□□□ -1.31
SCN1A-204ENST00000423058 FAM205AQ6ZU69 1335 aa6.86□□□□□ -1.31
SCN1A-204ENST00000423058 SRRM3A6NNA2 597 aaPredicted RBP6.86□□□□□ -1.31
SCN1A-204ENST00000423058 ANKRD65E5RJM6 399 aa6.86□□□□□ -1.31
SCN1A-204ENST00000423058 LRIG2O94898 1065 aa6.86□□□□□ -1.31
SCN1A-204ENST00000423058 PCCBP05166 539 aa6.86□□□□□ -1.31
SCN1A-204ENST00000423058 FGF1P05230 155 aa6.86□□□□□ -1.31
SCN1A-204ENST00000423058 ZNF37AP17032 561 aaPredicted RBP6.86□□□□□ -1.31
SCN1A-204ENST00000423058 GCNT1Q02742 428 aa6.86□□□□□ -1.31
SCN1A-204ENST00000423058 FMR1Q06787 632 aaKnown RBP eCLIP6.86□□□□□ -1.31
SCN1A-204ENST00000423058 PRKG2Q13237 762 aa6.86□□□□□ -1.31
SCN1A-204ENST00000423058 RIPK1Q13546 671 aa6.86□□□□□ -1.31
SCN1A-204ENST00000423058 C9orf64Q5T6V5 341 aa6.86□□□□□ -1.31
SCN1A-204ENST00000423058 GCNT7Q6ZNI0 430 aa6.86□□□□□ -1.31
SCN1A-204ENST00000423058 ADGRG6Q86SQ4 1221 aa6.86□□□□□ -1.31
SCN1A-204ENST00000423058 SLAIN1Q8ND83 568 aa6.86□□□□□ -1.31
SCN1A-204ENST00000423058 OR2W6PQ8NHA6 318 aa6.86□□□□□ -1.31
SCN1A-204ENST00000423058 ADAMTS15Q8TE58 950 aa6.86□□□□□ -1.31
SCN1A-204ENST00000423058 SLC22A17Q8WUG5 538 aa6.86□□□□□ -1.31
SCN1A-204ENST00000423058 RFKQ969G6 155 aa6.86□□□□□ -1.31
SCN1A-204ENST00000423058 B3GALT6Q96L58 329 aa6.86□□□□□ -1.31
SCN1A-204ENST00000423058 NSMCE3Q96MG7 304 aa6.86□□□□□ -1.31
SCN1A-204ENST00000423058 PANX1Q96RD7 426 aa6.86□□□□□ -1.31
SCN1A-204ENST00000423058 TTPALQ9BTX7 342 aa6.86□□□□□ -1.31
SCN1A-204ENST00000423058 COL1A2P08123 1366 aa6.86□□□□□ -1.31
SCN1A-204ENST00000423058 CEMIPQ8WUJ3 1361 aa6.86□□□□□ -1.31
SCN1A-204ENST00000423058 RFXANKO14593 260 aa6.86□□□□□ -1.31
SCN1A-204ENST00000423058 ERAL1O75616 437 aaKnown RBP6.86□□□□□ -1.31
SCN1A-204ENST00000423058 S100A6P06703 90 aa6.86□□□□□ -1.31
SCN1A-204ENST00000423058 SNRPB2P08579 225 aaKnown RBP6.86□□□□□ -1.31
SCN1A-204ENST00000423058 SLC35G6P0C7Q6 338 aa6.86□□□□□ -1.31
SCN1A-204ENST00000423058 PSMD8P48556 350 aa6.86□□□□□ -1.31
SCN1A-204ENST00000423058 ATP6V0D1P61421 351 aa6.86□□□□□ -1.31
SCN1A-204ENST00000423058 TROAPQ12815 778 aa6.86□□□□□ -1.31
SCN1A-204ENST00000423058 ZNF155Q12901 538 aaPredicted RBP6.86□□□□□ -1.31
SCN1A-204ENST00000423058 FAM189A2Q15884 450 aa6.86□□□□□ -1.31
SCN1A-204ENST00000423058 TTI2Q6NXR4 508 aa6.86□□□□□ -1.31
SCN1A-204ENST00000423058 TAS1R3Q7RTX0 852 aa6.86□□□□□ -1.31
SCN1A-204ENST00000423058 RANBP3LQ86VV4 465 aaPredicted RBP6.86□□□□□ -1.31
SCN1A-204ENST00000423058 MEIOBQ8N635 442 aa6.86□□□□□ -1.31
SCN1A-204ENST00000423058 GPR156Q8NFN8 814 aa6.86□□□□□ -1.31
SCN1A-204ENST00000423058 OR2L3Q8NG85 312 aa6.86□□□□□ -1.31
SCN1A-204ENST00000423058 OR14C36Q8NHC7 312 aa6.86□□□□□ -1.31
SCN1A-204ENST00000423058 S100ZQ8WXG8 99 aa6.86□□□□□ -1.31
SCN1A-204ENST00000423058 LRMDAQ9H2I8 198 aa6.86□□□□□ -1.31
SCN1A-204ENST00000423058 NRDE2Q9H7Z3 1164 aa6.86□□□□□ -1.31
SCN1A-204ENST00000423058 NOD2Q9HC29 1040 aa6.86□□□□□ -1.31
SCN1A-204ENST00000423058 EPB41L4AQ9HCS5 686 aaPredicted RBP6.86□□□□□ -1.31
SCN1A-204ENST00000423058 MRPS7Q9Y2R9 242 aaKnown RBP6.86□□□□□ -1.31
SCN1A-204ENST00000423058 MAGI3Q5TCQ9 1506 aa6.86□□□□□ -1.31
SCN1A-204ENST00000423058 MDM4O15151 490 aa6.86□□□□□ -1.31
SCN1A-204ENST00000423058 SUV39H1O43463 412 aa6.86□□□□□ -1.31
SCN1A-204ENST00000423058 OR7A10O76100 309 aa6.86□□□□□ -1.31
SCN1A-204ENST00000423058 SMIM10L2AP0DMW4 78 aa6.86□□□□□ -1.31
SCN1A-204ENST00000423058 SMIM10L2BP0DMW5 78 aa6.86□□□□□ -1.31
SCN1A-204ENST00000423058 NR2F6P10588 404 aa6.86□□□□□ -1.31
SCN1A-204ENST00000423058 ATP4AP20648 1035 aa6.86□□□□□ -1.31
SCN1A-204ENST00000423058 NT5EP21589 574 aa6.86□□□□□ -1.31
SCN1A-204ENST00000423058 RPL14P50914 215 aaKnown RBP6.86□□□□□ -1.31
SCN1A-204ENST00000423058 WDR59Q6PJI9 974 aa6.86□□□□□ -1.31
SCN1A-204ENST00000423058 SYVN1Q86TM6 617 aa6.86□□□□□ -1.31
SCN1A-204ENST00000423058 TDRPQ86YL5 185 aa6.86□□□□□ -1.31
SCN1A-204ENST00000423058 RASGRP3Q8IV61 690 aa6.86□□□□□ -1.31
SCN1A-204ENST00000423058 PDLIM2Q96JY6 352 aa6.86□□□□□ -1.31
SCN1A-204ENST00000423058 SGK2Q9HBY8 427 aa6.86□□□□□ -1.31
SCN1A-204ENST00000423058 SPAG4Q9NPE6 437 aa6.86□□□□□ -1.31
SCN1A-204ENST00000423058 SEMA4BQ9NPR2 832 aaPredicted RBP6.86□□□□□ -1.31
SCN1A-204ENST00000423058 KCNQ5Q9NR82 932 aa6.86□□□□□ -1.31
SCN1A-204ENST00000423058 SERINC1Q9NRX5 453 aa6.86□□□□□ -1.31
SCN1A-204ENST00000423058 SORCS3Q9UPU3 1222 aa6.86□□□□□ -1.31
SCN1A-204ENST00000423058 A0A0A0MRY4 1105 aa6.86□□□□□ -1.31
SCN1A-204ENST00000423058 TRIM38O00635 465 aa6.86□□□□□ -1.31
SCN1A-204ENST00000423058 PRMT5O14744 637 aaPredicted RBP6.86□□□□□ -1.31
SCN1A-204ENST00000423058 TNFRSF10BO14763 440 aa6.86□□□□□ -1.31
SCN1A-204ENST00000423058 DDNO94850 711 aaPredicted RBP6.86□□□□□ -1.31
SCN1A-204ENST00000423058 CDH13P55290 713 aa6.86□□□□□ -1.31
SCN1A-204ENST00000423058 SGCBQ16585 318 aa6.86□□□□□ -1.31
SCN1A-204ENST00000423058 METTL21CQ5VZV1 264 aa6.86□□□□□ -1.31
SCN1A-204ENST00000423058 PTCHD4Q6ZW05 846 aa6.86□□□□□ -1.31
SCN1A-204ENST00000423058 OR2AJ1Q8NGZ0 328 aa6.86□□□□□ -1.31
SCN1A-204ENST00000423058 SNIP1Q8TAD8 396 aaKnown RBP6.86□□□□□ -1.31
SCN1A-204ENST00000423058 RDH11Q8TC12 318 aa6.86□□□□□ -1.31
SCN1A-204ENST00000423058 ACER1Q8TDN7 264 aa6.86□□□□□ -1.31
SCN1A-204ENST00000423058 CKAP2Q8WWK9 683 aa6.86□□□□□ -1.31
SCN1A-204ENST00000423058 SPATA13Q96N96 652 aa6.86□□□□□ -1.31
SCN1A-204ENST00000423058 TNKS2Q9H2K2 1166 aa6.86□□□□□ -1.31
SCN1A-204ENST00000423058 EPB41L1Q9H4G0 881 aa6.86□□□□□ -1.31
SCN1A-204ENST00000423058 ALG9Q9H6U8 611 aa6.86□□□□□ -1.31
SCN1A-204ENST00000423058 PLAGL2Q9UPG8 496 aa6.86□□□□□ -1.31
SCN1A-204ENST00000423058 PCDHB1Q9Y5F3 818 aa6.86□□□□□ -1.31
SCN1A-204ENST00000423058 PRR36Q9H6K5 1346 aa6.86□□□□□ -1.31
SCN1A-204ENST00000423058 SMCO3A2RU48 225 aa6.86□□□□□ -1.31
SCN1A-204ENST00000423058 APOC4-APOC2K7ER74 178 aa6.86□□□□□ -1.31
SCN1A-204ENST00000423058 NUAK1O60285 661 aa6.86□□□□□ -1.31
SCN1A-204ENST00000423058 TRIM3O75382 744 aaPredicted RBP6.86□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms