RNA–Protein interactions for RNA: ENST00000417656.6

SKA1-203, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

TSL 2 BASIC

Gene SKA1, Length 1,095 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-203ENST00000417656 METTL18O95568 372 aa12.49□□□□□ -0.41
SKA1-203ENST00000417656 CER1O95813 267 aa12.49□□□□□ -0.41
SKA1-203ENST00000417656 IFNB1P01574 187 aa12.49□□□□□ -0.41
SKA1-203ENST00000417656 ATXN1LP0C7T5 689 aaKnown RBP12.49□□□□□ -0.41
SKA1-203ENST00000417656 ETV3P41162 512 aa12.49□□□□□ -0.41
SKA1-203ENST00000417656 ARHGAP8P85298 464 aa12.49□□□□□ -0.41
SKA1-203ENST00000417656 OLIG2Q13516 323 aa12.49□□□□□ -0.41
SKA1-203ENST00000417656 PRPSAP1Q14558 356 aa12.49□□□□□ -0.41
SKA1-203ENST00000417656 LRRC14Q15048 493 aa12.49□□□□□ -0.41
SKA1-203ENST00000417656 AGERQ15109 404 aa12.49□□□□□ -0.41
SKA1-203ENST00000417656 CCNG2Q16589 344 aa12.49□□□□□ -0.41
SKA1-203ENST00000417656 WSCD2Q2TBF2 565 aa12.49□□□□□ -0.41
SKA1-203ENST00000417656 HLA-BQ31612 363 aa12.49□□□□□ -0.41
SKA1-203ENST00000417656 TPRG1LQ5T0D9 272 aa12.49□□□□□ -0.41
SKA1-203ENST00000417656 IL27RAQ6UWB1 636 aa12.49□□□□□ -0.41
SKA1-203ENST00000417656 RFLNAQ6ZTI6 216 aa12.49□□□□□ -0.41
SKA1-203ENST00000417656 LYSMD3Q7Z3D4 306 aa12.49□□□□□ -0.41
SKA1-203ENST00000417656 PRUNE1Q86TP1 453 aa12.49□□□□□ -0.41
SKA1-203ENST00000417656 IQCHQ86VS3 1027 aa12.49□□□□□ -0.41
SKA1-203ENST00000417656 SPATS2Q86XZ4 545 aaKnown RBP12.49□□□□□ -0.41
SKA1-203ENST00000417656 SLC22A18ASQ8N1D0 253 aa12.49□□□□□ -0.41
SKA1-203ENST00000417656 SLC25A41Q8N5S1 370 aa12.49□□□□□ -0.41
SKA1-203ENST00000417656 PRELID2Q8N945 189 aa12.49□□□□□ -0.41
SKA1-203ENST00000417656 SKA1Q96BD8 255 aa12.49□□□□□ -0.41
SKA1-203ENST00000417656 DTD2Q96FN9 168 aa12.49□□□□□ -0.41
SKA1-203ENST00000417656 KLHDC7BQ96G42 594 aa12.49□□□□□ -0.41
SKA1-203ENST00000417656 LYSMD1Q96S90 227 aa12.49□□□□□ -0.41
SKA1-203ENST00000417656 NAPGQ99747 312 aaPredicted RBP12.49□□□□□ -0.41
SKA1-203ENST00000417656 GAREM1Q9H706 876 aa12.49□□□□□ -0.41
SKA1-203ENST00000417656 GDF3Q9NR23 364 aa12.49□□□□□ -0.41
SKA1-203ENST00000417656 KCND1Q9NSA2 647 aa12.49□□□□□ -0.41
SKA1-203ENST00000417656 CDV3Q9UKY7 258 aaKnown RBP12.49□□□□□ -0.41
SKA1-203ENST00000417656 ZKSCAN5Q9Y2L8 839 aa12.49□□□□□ -0.41
SKA1-203ENST00000417656 ZNF711Q9Y462 761 aa12.49□□□□□ -0.41
SKA1-203ENST00000417656 SPO11Q9Y5K1 396 aa12.49□□□□□ -0.41
SKA1-203ENST00000417656 PTPRZ1P23471 2315 aaPredicted RBP12.49□□□□□ -0.41
SKA1-203ENST00000417656 DMXL1Q9Y485 3027 aa12.48□□□□□ -0.41
SKA1-203ENST00000417656 LOC285095A0A1B0GVY8 99 aa12.48□□□□□ -0.41
SKA1-203ENST00000417656 PSMD11O00231 422 aa12.48□□□□□ -0.41
SKA1-203ENST00000417656 GCATO75600 419 aa12.48□□□□□ -0.41
SKA1-203ENST00000417656 CLDN7O95471 211 aa12.48□□□□□ -0.41
SKA1-203ENST00000417656 ITGAVP06756 1048 aa12.48□□□□□ -0.41
SKA1-203ENST00000417656 ETS1P14921 441 aa12.48□□□□□ -0.41
SKA1-203ENST00000417656 ZNF30P17039 623 aa12.48□□□□□ -0.41
SKA1-203ENST00000417656 TNNT3P45378 269 aaPredicted RBP12.48□□□□□ -0.41
SKA1-203ENST00000417656 STC1P52823 247 aa12.48□□□□□ -0.41
SKA1-203ENST00000417656 LIMK1P53667 647 aa12.48□□□□□ -0.41
SKA1-203ENST00000417656 PFN3P60673 137 aa12.48□□□□□ -0.41
SKA1-203ENST00000417656 IL9RQ01113 521 aa12.48□□□□□ -0.41
SKA1-203ENST00000417656 OVGP1Q12889 678 aa12.48□□□□□ -0.41
SKA1-203ENST00000417656 CDKN3Q16667 212 aa12.48□□□□□ -0.41
SKA1-203ENST00000417656 RSPO4Q2I0M5 234 aaPredicted RBP12.48□□□□□ -0.41
SKA1-203ENST00000417656 ZNF423Q2M1K9 1284 aa12.48□□□□□ -0.41
SKA1-203ENST00000417656 P3H1Q32P28 736 aa12.48□□□□□ -0.41
SKA1-203ENST00000417656 UAP1L1Q3KQV9 507 aa12.48□□□□□ -0.41
SKA1-203ENST00000417656 SIRPB2Q5JXA9 342 aa12.48□□□□□ -0.41
SKA1-203ENST00000417656 PRAMEF14Q5SWL7 426 aa12.48□□□□□ -0.41
SKA1-203ENST00000417656 DRICH1Q6PGQ1 229 aaPredicted RBP12.48□□□□□ -0.41
SKA1-203ENST00000417656 Q6ZSR6 202 aa12.48□□□□□ -0.41
SKA1-203ENST00000417656 Q6ZVL8 140 aa12.48□□□□□ -0.41
SKA1-203ENST00000417656 PELI3Q8N2H9 469 aa12.48□□□□□ -0.41
SKA1-203ENST00000417656 GLIS1Q8NBF1 620 aa12.48□□□□□ -0.41
SKA1-203ENST00000417656 PLA2G15Q8NCC3 412 aa12.48□□□□□ -0.41
SKA1-203ENST00000417656 APOL2Q9BQE5 337 aa12.48□□□□□ -0.41
SKA1-203ENST00000417656 AP1M1Q9BXS5 423 aa12.48□□□□□ -0.41
SKA1-203ENST00000417656 GPR27Q9NS67 375 aa12.48□□□□□ -0.41
SKA1-203ENST00000417656 CD84Q9UIB8 345 aa12.48□□□□□ -0.41
SKA1-203ENST00000417656 TTC7AQ9ULT0 858 aaPredicted RBP12.48□□□□□ -0.41
SKA1-203ENST00000417656 SHOC2Q9UQ13 582 aa12.48□□□□□ -0.41
SKA1-203ENST00000417656 HS3ST3A1Q9Y663 406 aa12.48□□□□□ -0.41
SKA1-203ENST00000417656 LRP4O75096 1905 aa12.48□□□□□ -0.41
SKA1-203ENST00000417656 GOLGA6CA6NDK9 693 aa12.47□□□□□ -0.41
SKA1-203ENST00000417656 GOLGA6BA6NDN3 693 aa12.47□□□□□ -0.41
SKA1-203ENST00000417656 K7ESM1 405 aa12.47□□□□□ -0.41
SKA1-203ENST00000417656 CES2O00748 559 aa12.47□□□□□ -0.41
SKA1-203ENST00000417656 MAGEC1O60732 1142 aa12.47□□□□□ -0.41
SKA1-203ENST00000417656 USP12O75317 370 aa12.47□□□□□ -0.41
SKA1-203ENST00000417656 AGTP01019 485 aa12.47□□□□□ -0.41
SKA1-203ENST00000417656 FGF1P05230 155 aa12.47□□□□□ -0.41
SKA1-203ENST00000417656 ZSCAN5DPP0CG00 497 aa12.47□□□□□ -0.41
SKA1-203ENST00000417656 GOLGA6DP0CG33 693 aa12.47□□□□□ -0.41
SKA1-203ENST00000417656 TCP1P17987 556 aaKnown RBP12.47□□□□□ -0.41
SKA1-203ENST00000417656 HLA-DPA1P20036 260 aa12.47□□□□□ -0.41
SKA1-203ENST00000417656 RABIFP47224 123 aa12.47□□□□□ -0.41
SKA1-203ENST00000417656 KCNJ1P48048 391 aa12.47□□□□□ -0.41
SKA1-203ENST00000417656 CCT8P50990 548 aa12.47□□□□□ -0.41
SKA1-203ENST00000417656 PTSQ03393 145 aa12.47□□□□□ -0.41
SKA1-203ENST00000417656 MTM1Q13496 603 aa12.47□□□□□ -0.41
SKA1-203ENST00000417656 PDE1CQ14123 709 aaPredicted RBP12.47□□□□□ -0.41
SKA1-203ENST00000417656 SPARCL1Q14515 664 aa12.47□□□□□ -0.41
SKA1-203ENST00000417656 SLC1A5Q15758 541 aa12.47□□□□□ -0.41
SKA1-203ENST00000417656 KCTD19Q17RG1 926 aaPredicted RBP12.47□□□□□ -0.41
SKA1-203ENST00000417656 PARP6Q2NL67 630 aa12.47□□□□□ -0.41
SKA1-203ENST00000417656 CCDC70Q6NSX1 233 aa12.47□□□□□ -0.41
SKA1-203ENST00000417656 ESRP1Q6NXG1 681 aaKnown RBP12.47□□□□□ -0.41
SKA1-203ENST00000417656 KLHDC8BQ8IXV7 354 aa12.47□□□□□ -0.41
SKA1-203ENST00000417656 CBARPQ8N350 705 aaPredicted RBP12.47□□□□□ -0.41
SKA1-203ENST00000417656 CCDC89Q8N998 374 aa12.47□□□□□ -0.41
SKA1-203ENST00000417656 FAM174AQ8TBP5 190 aa12.47□□□□□ -0.41
SKA1-203ENST00000417656 ACTRT1Q8TDG2 376 aa12.47□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 70.3 ms