RNA–Protein interactions for RNA: ENST00000416769.2

LINC00339-202, long intergenic non-protein coding RNA 339, humanhuman

TSL 1 (best) BASIC

Gene LINC00339, Length 1,077 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00339-202ENST00000416769 CSRP3P50461 194 aa12.96□□□□□ -0.33
LINC00339-202ENST00000416769 GSCP56915 257 aaPredicted RBP12.96□□□□□ -0.33
LINC00339-202ENST00000416769 GEMIN4P57678 1058 aaKnown RBP12.96□□□□□ -0.33
LINC00339-202ENST00000416769 SERINC3Q13530 473 aa12.96□□□□□ -0.33
LINC00339-202ENST00000416769 PTPRRQ15256 657 aa12.96□□□□□ -0.33
LINC00339-202ENST00000416769 UGP2Q16851 508 aa12.96□□□□□ -0.33
LINC00339-202ENST00000416769 CERCAMQ5T4B2 595 aa12.96□□□□□ -0.33
LINC00339-202ENST00000416769 ARHGAP36Q6ZRI8 547 aa12.96□□□□□ -0.33
LINC00339-202ENST00000416769 H2AFVQ71UI9 128 aa12.96□□□□□ -0.33
LINC00339-202ENST00000416769 MON1BQ7L1V2 547 aa12.96□□□□□ -0.33
LINC00339-202ENST00000416769 ARCQ7LC44 396 aa12.96□□□□□ -0.33
LINC00339-202ENST00000416769 SLITRK4Q8IW52 837 aa12.96□□□□□ -0.33
LINC00339-202ENST00000416769 TP53INP2Q8IXH6 220 aa12.96□□□□□ -0.33
LINC00339-202ENST00000416769 RCBTB1Q8NDN9 531 aa12.96□□□□□ -0.33
LINC00339-202ENST00000416769 FAM46DQ8NEK8 389 aa12.96□□□□□ -0.33
LINC00339-202ENST00000416769 WDR48Q8TAF3 677 aa12.96□□□□□ -0.33
LINC00339-202ENST00000416769 PATE1Q8WXA2 126 aa12.96□□□□□ -0.33
LINC00339-202ENST00000416769 TRIM11Q96F44 468 aa12.96□□□□□ -0.33
LINC00339-202ENST00000416769 WDR92Q96MX6 357 aa12.96□□□□□ -0.33
LINC00339-202ENST00000416769 ZNF830Q96NB3 372 aaPredicted RBP12.96□□□□□ -0.33
LINC00339-202ENST00000416769 RBM15Q96T37 977 aaKnown RBP eCLIP12.96□□□□□ -0.33
LINC00339-202ENST00000416769 NCAPGQ9BPX3 1015 aa12.96□□□□□ -0.33
LINC00339-202ENST00000416769 NUDT22Q9BRQ3 303 aa12.96□□□□□ -0.33
LINC00339-202ENST00000416769 FAM117AQ9C073 453 aa12.96□□□□□ -0.33
LINC00339-202ENST00000416769 KCNF1Q9H3M0 494 aa12.96□□□□□ -0.33
LINC00339-202ENST00000416769 LUC7LQ9NQ29 371 aaKnown RBP12.96□□□□□ -0.33
LINC00339-202ENST00000416769 ACSL6Q9UKU0 697 aa12.96□□□□□ -0.33
LINC00339-202ENST00000416769 PCDHA13Q9Y5I0 950 aa12.96□□□□□ -0.33
LINC00339-202ENST00000416769 HEMK1Q9Y5R4 338 aaPredicted RBP12.96□□□□□ -0.33
LINC00339-202ENST00000416769 RELNP78509 3460 aa12.96□□□□□ -0.33
LINC00339-202ENST00000416769 FLNCQ14315 2725 aa12.96□□□□□ -0.34
LINC00339-202ENST00000416769 B4GAT1O43505 415 aa12.95□□□□□ -0.34
LINC00339-202ENST00000416769 RECQL5O94762 991 aaPredicted RBP12.95□□□□□ -0.34
LINC00339-202ENST00000416769 FUCA1P04066 466 aa12.95□□□□□ -0.34
LINC00339-202ENST00000416769 XPAP23025 273 aaPredicted RBP12.95□□□□□ -0.34
LINC00339-202ENST00000416769 PEX5P50542 639 aa12.95□□□□□ -0.34
LINC00339-202ENST00000416769 OR1D5P58170 312 aa12.95□□□□□ -0.34
LINC00339-202ENST00000416769 RPL7AP62424 266 aaKnown RBP12.95□□□□□ -0.34
LINC00339-202ENST00000416769 OGDHQ02218 1023 aa12.95□□□□□ -0.34
LINC00339-202ENST00000416769 SRSF1Q07955 248 aaKnown RBP eCLIP12.95□□□□□ -0.34
LINC00339-202ENST00000416769 HLTFQ14527 1009 aaKnown RBP eCLIP12.95□□□□□ -0.34
LINC00339-202ENST00000416769 CA9Q16790 459 aa12.95□□□□□ -0.34
LINC00339-202ENST00000416769 AMZ1Q400G9 498 aa12.95□□□□□ -0.34
LINC00339-202ENST00000416769 COLEC12Q5KU26 742 aa12.95□□□□□ -0.34
LINC00339-202ENST00000416769 PHF19Q5T6S3 580 aa12.95□□□□□ -0.34
LINC00339-202ENST00000416769 ACBD5Q5T8D3 534 aaPredicted RBP12.95□□□□□ -0.34
LINC00339-202ENST00000416769 SCYL2Q6P3W7 929 aa12.95□□□□□ -0.34
LINC00339-202ENST00000416769 ZNF574Q6ZN55 896 aaPredicted RBP12.95□□□□□ -0.34
LINC00339-202ENST00000416769 STRADAQ7RTN6 431 aa12.95□□□□□ -0.34
LINC00339-202ENST00000416769 TAF8Q7Z7C8 310 aa12.95□□□□□ -0.34
LINC00339-202ENST00000416769 GKN2Q86XP6 184 aa12.95□□□□□ -0.34
LINC00339-202ENST00000416769 DTX1Q86Y01 620 aa12.95□□□□□ -0.34
LINC00339-202ENST00000416769 TSEN2Q8NCE0 465 aaKnown RBP12.95□□□□□ -0.34
LINC00339-202ENST00000416769 NTAN1Q96AB6 310 aa12.95□□□□□ -0.34
LINC00339-202ENST00000416769 C1QTNF7Q9BXJ2 289 aa12.95□□□□□ -0.34
LINC00339-202ENST00000416769 STRADBQ9C0K7 418 aa12.95□□□□□ -0.34
LINC00339-202ENST00000416769 SUV39H2Q9H5I1 410 aa12.95□□□□□ -0.34
LINC00339-202ENST00000416769 SPATS2LQ9NUQ6 558 aaKnown RBP12.95□□□□□ -0.34
LINC00339-202ENST00000416769 ATP8A1Q9Y2Q0 1164 aa12.95□□□□□ -0.34
LINC00339-202ENST00000416769 ST14Q9Y5Y6 855 aa12.95□□□□□ -0.34
LINC00339-202ENST00000416769 A0A0U1RQS6 177 aa12.94□□□□□ -0.34
LINC00339-202ENST00000416769 CXorf51AA0A1B0GTR3 108 aa12.94□□□□□ -0.34
LINC00339-202ENST00000416769 TCRBV5S1A1TA0A578 114 aa12.94□□□□□ -0.34
LINC00339-202ENST00000416769 NVLO15381 856 aaKnown RBP12.94□□□□□ -0.34
LINC00339-202ENST00000416769 SUV39H1O43463 412 aa12.94□□□□□ -0.34
LINC00339-202ENST00000416769 TNFP01375 233 aa12.94□□□□□ -0.34
LINC00339-202ENST00000416769 TMEM253P0C7T8 217 aa12.94□□□□□ -0.34
LINC00339-202ENST00000416769 GPD1P21695 349 aa12.94□□□□□ -0.34
LINC00339-202ENST00000416769 MPSTP25325 297 aa12.94□□□□□ -0.34
LINC00339-202ENST00000416769 BLKP51451 505 aa12.94□□□□□ -0.34
LINC00339-202ENST00000416769 B4GALNT1Q00973 533 aa12.94□□□□□ -0.34
LINC00339-202ENST00000416769 EIF3IQ13347 325 aaKnown RBP12.94□□□□□ -0.34
LINC00339-202ENST00000416769 C14orf28Q4W4Y0 310 aa12.94□□□□□ -0.34
LINC00339-202ENST00000416769 MANEAQ5SRI9 462 aa12.94□□□□□ -0.34
LINC00339-202ENST00000416769 PLEKHA7Q6IQ23 1121 aa12.94□□□□□ -0.34
LINC00339-202ENST00000416769 OGFOD3Q6PK18 319 aa12.94□□□□□ -0.34
LINC00339-202ENST00000416769 LVRNQ6Q4G3 990 aa12.94□□□□□ -0.34
LINC00339-202ENST00000416769 SLFN11Q7Z7L1 901 aa12.94□□□□□ -0.34
LINC00339-202ENST00000416769 DNAAF5Q86Y56 855 aa12.94□□□□□ -0.34
LINC00339-202ENST00000416769 PTRH1Q86Y79 214 aaKnown RBP12.94□□□□□ -0.34
LINC00339-202ENST00000416769 NRROSQ86YC3 692 aa12.94□□□□□ -0.34
LINC00339-202ENST00000416769 TXLNBQ8N3L3 684 aa12.94□□□□□ -0.34
LINC00339-202ENST00000416769 SCG3Q8WXD2 468 aaKnown RBP12.94□□□□□ -0.34
LINC00339-202ENST00000416769 RNF31Q96EP0 1072 aa12.94□□□□□ -0.34
LINC00339-202ENST00000416769 TMEM74Q96NL1 305 aa12.94□□□□□ -0.34
LINC00339-202ENST00000416769 ARHGAP9Q9BRR9 750 aa12.94□□□□□ -0.34
LINC00339-202ENST00000416769 CYP4F12Q9HCS2 524 aa12.94□□□□□ -0.34
LINC00339-202ENST00000416769 TMEM9Q9P0T7 183 aa12.94□□□□□ -0.34
LINC00339-202ENST00000416769 LRIT1Q9P2V4 623 aa12.94□□□□□ -0.34
LINC00339-202ENST00000416769 UBA2Q9UBT2 640 aaPredicted RBP12.94□□□□□ -0.34
LINC00339-202ENST00000416769 CNOT8Q9UFF9 292 aaKnown RBP12.94□□□□□ -0.34
LINC00339-202ENST00000416769 MOSPD1Q9UJG1 213 aa12.94□□□□□ -0.34
LINC00339-202ENST00000416769 FZD10Q9ULW2 581 aa12.94□□□□□ -0.34
LINC00339-202ENST00000416769 ADGRG1Q9Y653 693 aa12.94□□□□□ -0.34
LINC00339-202ENST00000416769 DGKBQ9Y6T7 804 aa12.94□□□□□ -0.34
LINC00339-202ENST00000416769 LRRK2Q5S007 2527 aa12.94□□□□□ -0.34
LINC00339-202ENST00000416769 SIGLEC16A6NMB1 481 aa12.93□□□□□ -0.34
LINC00339-202ENST00000416769 TOR1BO14657 336 aa12.93□□□□□ -0.34
LINC00339-202ENST00000416769 CYP1A2P05177 515 aa12.93□□□□□ -0.34
LINC00339-202ENST00000416769 KRT3P12035 628 aa12.93□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 19.3 ms