RNA–Protein interactions for RNA: ENST00000378839.1

CCDC3-202, Transcript of coiled-coil domain containing 3, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene CCDC3, Length 3,180 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3-202ENST00000378839 C5orf22Q49AR2 442 aa13.39□□□□□ -0.27
CCDC3-202ENST00000378839 RNF220Q5VTB9 566 aa13.39□□□□□ -0.27
CCDC3-202ENST00000378839 LILRA2Q8N149 483 aa13.39□□□□□ -0.27
CCDC3-202ENST00000378839 MDGA1Q8NFP4 955 aa13.39□□□□□ -0.27
CCDC3-202ENST00000378839 OR9I1Q8NGQ6 314 aa13.39□□□□□ -0.27
CCDC3-202ENST00000378839 EXT2Q93063 718 aa13.39□□□□□ -0.27
CCDC3-202ENST00000378839 FEM1CQ96JP0 617 aa13.39□□□□□ -0.27
CCDC3-202ENST00000378839 SLC45A3Q96JT2 553 aa13.39□□□□□ -0.27
CCDC3-202ENST00000378839 NSUN5Q96P11 429 aaKnown RBP13.39□□□□□ -0.27
CCDC3-202ENST00000378839 TUBGCP5Q96RT8 1024 aa13.39□□□□□ -0.27
CCDC3-202ENST00000378839 XRN2Q9H0D6 950 aaKnown RBP eCLIP13.39□□□□□ -0.27
CCDC3-202ENST00000378839 OLA1Q9NTK5 396 aaKnown RBP13.39□□□□□ -0.27
CCDC3-202ENST00000378839 GMPR2Q9P2T1 348 aaKnown RBP13.39□□□□□ -0.27
CCDC3-202ENST00000378839 SELPP16109 830 aa13.39□□□□□ -0.27
CCDC3-202ENST00000378839 IMPDH1P20839 514 aa13.39□□□□□ -0.27
CCDC3-202ENST00000378839 PCDH20Q8N6Y1 951 aaKnown RBP13.39□□□□□ -0.27
CCDC3-202ENST00000378839 KLHL32Q96NJ5 620 aa13.39□□□□□ -0.27
CCDC3-202ENST00000378839 PCDHGA7Q9Y5G6 932 aa13.39□□□□□ -0.27
CCDC3-202ENST00000378839 ARVCFO00192 962 aa13.38□□□□□ -0.27
CCDC3-202ENST00000378839 ACOT8O14734 319 aa13.38□□□□□ -0.27
CCDC3-202ENST00000378839 SCAMP3O14828 347 aaKnown RBP13.38□□□□□ -0.27
CCDC3-202ENST00000378839 SEC24AO95486 1093 aa13.38□□□□□ -0.27
CCDC3-202ENST00000378839 MAPKAPK2P49137 400 aa13.38□□□□□ -0.27
CCDC3-202ENST00000378839 YBX1P67809 324 aaKnown RBP13.38□□□□□ -0.27
CCDC3-202ENST00000378839 GNA12Q03113 381 aa13.38□□□□□ -0.27
CCDC3-202ENST00000378839 PTK2BQ14289 1009 aa13.38□□□□□ -0.27
CCDC3-202ENST00000378839 HERC3Q15034 1050 aa13.38□□□□□ -0.27
CCDC3-202ENST00000378839 ALG1LQ6GMV1 187 aa13.38□□□□□ -0.27
CCDC3-202ENST00000378839 FBXL19Q6PCT2 694 aa13.38□□□□□ -0.27
CCDC3-202ENST00000378839 DENND1CQ8IV53 801 aa13.38□□□□□ -0.27
CCDC3-202ENST00000378839 ABI1Q8IZP0 508 aa13.38□□□□□ -0.27
CCDC3-202ENST00000378839 SLC30A3Q99726 388 aa13.38□□□□□ -0.27
CCDC3-202ENST00000378839 MGME1Q9BQP7 344 aa13.38□□□□□ -0.27
CCDC3-202ENST00000378839 PCDH10Q9P2E7 1040 aa13.38□□□□□ -0.27
CCDC3-202ENST00000378839 PCDHGB4Q9UN71 923 aa13.38□□□□□ -0.27
CCDC3-202ENST00000378839 PCDHGB5Q9Y5G0 923 aa13.38□□□□□ -0.27
CCDC3-202ENST00000378839 SCN5AQ14524 2016 aa13.38□□□□□ -0.27
CCDC3-202ENST00000378839 UBXN8O00124 270 aa13.38□□□□□ -0.27
CCDC3-202ENST00000378839 SLC22A2O15244 555 aa13.38□□□□□ -0.27
CCDC3-202ENST00000378839 ALDOCP09972 364 aaKnown RBP13.38□□□□□ -0.27
CCDC3-202ENST00000378839 ZCCHC18P0CG32 403 aa13.38□□□□□ -0.27
CCDC3-202ENST00000378839 TCN1P20061 433 aaPredicted RBP13.38□□□□□ -0.27
CCDC3-202ENST00000378839 YBEYP58557 167 aaPredicted RBP13.38□□□□□ -0.27
CCDC3-202ENST00000378839 ZNF235Q14590 738 aa13.38□□□□□ -0.27
CCDC3-202ENST00000378839 BNC2Q6ZN30 1099 aaPredicted RBP13.38□□□□□ -0.27
CCDC3-202ENST00000378839 PGAM4Q8N0Y7 254 aa13.38□□□□□ -0.27
CCDC3-202ENST00000378839 RYBPQ8N488 228 aaPredicted RBP13.38□□□□□ -0.27
CCDC3-202ENST00000378839 GPR150Q8NGU9 434 aa13.38□□□□□ -0.27
CCDC3-202ENST00000378839 CEP70Q8NHQ1 597 aa13.38□□□□□ -0.27
CCDC3-202ENST00000378839 BRSK1Q8TDC3 778 aa13.38□□□□□ -0.27
CCDC3-202ENST00000378839 JADE3Q92613 823 aa13.38□□□□□ -0.27
CCDC3-202ENST00000378839 TMA16Q96EY4 203 aaKnown RBP13.38□□□□□ -0.27
CCDC3-202ENST00000378839 RNF38Q9H0F5 515 aa13.38□□□□□ -0.27
CCDC3-202ENST00000378839 PRPF19Q9UMS4 504 aaKnown RBP13.38□□□□□ -0.27
CCDC3-202ENST00000378839 TRAF6Q9Y4K3 522 aa13.38□□□□□ -0.27
CCDC3-202ENST00000378839 COCHO43405 550 aa13.38□□□□□ -0.27
CCDC3-202ENST00000378839 ACSL4O60488 711 aa13.38□□□□□ -0.27
CCDC3-202ENST00000378839 RPP40O75818 363 aaKnown RBP13.38□□□□□ -0.27
CCDC3-202ENST00000378839 GLP2RO95838 553 aa13.38□□□□□ -0.27
CCDC3-202ENST00000378839 INHAP05111 366 aa13.38□□□□□ -0.27
CCDC3-202ENST00000378839 LYNP07948 512 aa13.38□□□□□ -0.27
CCDC3-202ENST00000378839 RBP1P09455 135 aa13.38□□□□□ -0.27
CCDC3-202ENST00000378839 HSPA1AP0DMV8 641 aaKnown RBP13.38□□□□□ -0.27
CCDC3-202ENST00000378839 HSPA1BP0DMV9 641 aaKnown RBP13.38□□□□□ -0.27
CCDC3-202ENST00000378839 ZNF140P52738 457 aaPredicted RBP13.38□□□□□ -0.27
CCDC3-202ENST00000378839 MRPS22P82650 360 aaKnown RBP13.38□□□□□ -0.27
CCDC3-202ENST00000378839 C16orf89Q6UX73 402 aa13.38□□□□□ -0.27
CCDC3-202ENST00000378839 L3HYPDHQ96EM0 354 aa13.38□□□□□ -0.27
CCDC3-202ENST00000378839 CDKN2AIPNLQ96HQ2 116 aa13.38□□□□□ -0.27
CCDC3-202ENST00000378839 SCLYQ96I15 445 aa13.38□□□□□ -0.27
CCDC3-202ENST00000378839 KCNA7Q96RP8 456 aa13.38□□□□□ -0.27
CCDC3-202ENST00000378839 SH3GL3Q99963 347 aa13.38□□□□□ -0.27
CCDC3-202ENST00000378839 TTLL2Q9BWV7 592 aa13.38□□□□□ -0.27
CCDC3-202ENST00000378839 ELAC1Q9H777 363 aaKnown RBP13.38□□□□□ -0.27
CCDC3-202ENST00000378839 TRPC7Q9HCX4 862 aa13.38□□□□□ -0.27
CCDC3-202ENST00000378839 VPS28Q9UK41 221 aa13.38□□□□□ -0.27
CCDC3-202ENST00000378839 TRPC5OSA6NMA1 111 aa13.37□□□□□ -0.27
CCDC3-202ENST00000378839 F5H5T6 163 aa13.37□□□□□ -0.27
CCDC3-202ENST00000378839 CASQ2O14958 399 aaPredicted RBP13.37□□□□□ -0.27
CCDC3-202ENST00000378839 TRPA1O75762 1119 aa13.37□□□□□ -0.27
CCDC3-202ENST00000378839 SUPT7LO94864 414 aa13.37□□□□□ -0.27
CCDC3-202ENST00000378839 EFEMP2O95967 443 aa13.37□□□□□ -0.27
CCDC3-202ENST00000378839 CD160O95971 181 aa13.37□□□□□ -0.27
CCDC3-202ENST00000378839 F11P03951 625 aa13.37□□□□□ -0.27
CCDC3-202ENST00000378839 ZNF37AP17032 561 aaPredicted RBP13.37□□□□□ -0.27
CCDC3-202ENST00000378839 SUOXP51687 545 aa13.37□□□□□ -0.27
CCDC3-202ENST00000378839 CYTH1Q15438 398 aa13.37□□□□□ -0.27
CCDC3-202ENST00000378839 TRIP10Q15642 601 aa13.37□□□□□ -0.27
CCDC3-202ENST00000378839 FBXO22Q8NEZ5 403 aa13.37□□□□□ -0.27
CCDC3-202ENST00000378839 TSPAN17Q96FV3 270 aa13.37□□□□□ -0.27
CCDC3-202ENST00000378839 TTPALQ9BTX7 342 aa13.37□□□□□ -0.27
CCDC3-202ENST00000378839 SPON2Q9BUD6 331 aa13.37□□□□□ -0.27
CCDC3-202ENST00000378839 ZDHHC7Q9NXF8 308 aa13.37□□□□□ -0.27
CCDC3-202ENST00000378839 E7ENX8 843 aa13.37□□□□□ -0.27
CCDC3-202ENST00000378839 GPR39O43194 453 aa13.37□□□□□ -0.27
CCDC3-202ENST00000378839 FGF1P05230 155 aa13.37□□□□□ -0.27
CCDC3-202ENST00000378839 HMGA1P17096 107 aaKnown RBP13.37□□□□□ -0.27
CCDC3-202ENST00000378839 CR2P20023 1033 aa13.37□□□□□ -0.27
CCDC3-202ENST00000378839 RANBP1P43487 201 aa13.37□□□□□ -0.27
CCDC3-202ENST00000378839 LRP8Q14114 963 aa13.37□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 24.8 ms