RNA–Protein interactions for RNA: ENST00000331194.8

CCDC88C-201, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 5 BASIC

Gene CCDC88C, Length 3,104 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-201ENST00000331194 VWA7Q9Y334 891 aa13.48□□□□□ -0.25
CCDC88C-201ENST00000331194 MSI1O43347 362 aaKnown RBP13.48□□□□□ -0.25
CCDC88C-201ENST00000331194 HUS1O60921 280 aa13.48□□□□□ -0.25
CCDC88C-201ENST00000331194 AP2A1O95782 977 aa13.48□□□□□ -0.25
CCDC88C-201ENST00000331194 HTR1AP08908 422 aa13.48□□□□□ -0.25
CCDC88C-201ENST00000331194 STAG3L1P0CL83 205 aa13.48□□□□□ -0.25
CCDC88C-201ENST00000331194 GFAPP14136 432 aa13.48□□□□□ -0.25
CCDC88C-201ENST00000331194 AGXTP21549 392 aa13.48□□□□□ -0.25
CCDC88C-201ENST00000331194 HMGB2P26583 209 aaKnown RBP13.48□□□□□ -0.25
CCDC88C-201ENST00000331194 CSRP3P50461 194 aa13.48□□□□□ -0.25
CCDC88C-201ENST00000331194 IST1P53990 364 aa13.48□□□□□ -0.25
CCDC88C-201ENST00000331194 TSPY1Q01534 308 aa13.48□□□□□ -0.25
CCDC88C-201ENST00000331194 OCA2Q04671 838 aa13.48□□□□□ -0.25
CCDC88C-201ENST00000331194 ZNF846Q147U1 533 aa13.48□□□□□ -0.25
CCDC88C-201ENST00000331194 TARBP2Q15633 366 aaKnown RBP13.48□□□□□ -0.25
CCDC88C-201ENST00000331194 MEP1AQ16819 746 aa13.48□□□□□ -0.25
CCDC88C-201ENST00000331194 FAM83EQ2M2I3 478 aa13.48□□□□□ -0.25
CCDC88C-201ENST00000331194 DPY19L1Q2PZI1 675 aa13.48□□□□□ -0.25
CCDC88C-201ENST00000331194 USP51Q70EK9 711 aa13.48□□□□□ -0.25
CCDC88C-201ENST00000331194 ERO1BQ86YB8 467 aa13.48□□□□□ -0.25
CCDC88C-201ENST00000331194 ANKRD13BQ86YJ7 626 aa13.48□□□□□ -0.25
CCDC88C-201ENST00000331194 SFRP1Q8N474 314 aa13.48□□□□□ -0.25
CCDC88C-201ENST00000331194 PSD4Q8NDX1 1056 aa13.48□□□□□ -0.25
CCDC88C-201ENST00000331194 SLC35F5Q8WV83 523 aa13.48□□□□□ -0.25
CCDC88C-201ENST00000331194 ELMO2Q96JJ3 720 aa13.48□□□□□ -0.25
CCDC88C-201ENST00000331194 RHOJQ9H4E5 214 aa13.48□□□□□ -0.25
CCDC88C-201ENST00000331194 GPN2Q9H9Y4 310 aaPredicted RBP13.48□□□□□ -0.25
CCDC88C-201ENST00000331194 MEAF6Q9HAF1 191 aa13.48□□□□□ -0.25
CCDC88C-201ENST00000331194 CD320Q9NPF0 282 aa13.48□□□□□ -0.25
CCDC88C-201ENST00000331194 SLAMF8Q9P0V8 285 aa13.48□□□□□ -0.25
CCDC88C-201ENST00000331194 SLC2A6Q9UGQ3 507 aa13.48□□□□□ -0.25
CCDC88C-201ENST00000331194 ATP11BQ9Y2G3 1177 aa13.48□□□□□ -0.25
CCDC88C-201ENST00000331194 ANK1P16157 1881 aa13.48□□□□□ -0.25
CCDC88C-201ENST00000331194 PSME4Q14997 1843 aa13.47□□□□□ -0.25
CCDC88C-201ENST00000331194 FAM95CA0A1B0GW59 222 aa13.47□□□□□ -0.25
CCDC88C-201ENST00000331194 H3BMM5 538 aa13.47□□□□□ -0.25
CCDC88C-201ENST00000331194 FXYD1O00168 92 aa13.47□□□□□ -0.25
CCDC88C-201ENST00000331194 PPEF2O14830 753 aa13.47□□□□□ -0.25
CCDC88C-201ENST00000331194 CASP2P42575 452 aa13.47□□□□□ -0.25
CCDC88C-201ENST00000331194 HK2P52789 917 aa13.47□□□□□ -0.25
CCDC88C-201ENST00000331194 POU6F1Q14863 301 aa13.47□□□□□ -0.25
CCDC88C-201ENST00000331194 GEN1Q17RS7 908 aa13.47□□□□□ -0.25
CCDC88C-201ENST00000331194 BROXQ5VW32 411 aa13.47□□□□□ -0.25
CCDC88C-201ENST00000331194 LGI2Q8N0V4 545 aa13.47□□□□□ -0.25
CCDC88C-201ENST00000331194 RNF139Q8WU17 664 aa13.47□□□□□ -0.25
CCDC88C-201ENST00000331194 VPS33AQ96AX1 596 aa13.47□□□□□ -0.25
CCDC88C-201ENST00000331194 CEP295NLQ96MC4 621 aa13.47□□□□□ -0.25
CCDC88C-201ENST00000331194 NOL6Q9H6R4 1146 aaKnown RBP13.47□□□□□ -0.25
CCDC88C-201ENST00000331194 HACL1Q9UJ83 578 aa13.47□□□□□ -0.25
CCDC88C-201ENST00000331194 ALBP02768 609 aa13.47□□□□□ -0.25
CCDC88C-201ENST00000331194 S100BP04271 92 aaPredicted RBP13.47□□□□□ -0.25
CCDC88C-201ENST00000331194 BMP4P12644 408 aa13.47□□□□□ -0.25
CCDC88C-201ENST00000331194 NFKB1P19838 968 aa13.47□□□□□ -0.25
CCDC88C-201ENST00000331194 GPX3P22352 226 aa13.47□□□□□ -0.25
CCDC88C-201ENST00000331194 SLC6A2P23975 617 aa13.47□□□□□ -0.25
CCDC88C-201ENST00000331194 RFC2P35250 354 aa13.47□□□□□ -0.25
CCDC88C-201ENST00000331194 TGFBR1P36897 503 aa13.47□□□□□ -0.25
CCDC88C-201ENST00000331194 ARCN1P48444 511 aaKnown RBP13.47□□□□□ -0.25
CCDC88C-201ENST00000331194 RAB10P61026 200 aa13.47□□□□□ -0.25
CCDC88C-201ENST00000331194 GRB7Q14451 532 aa13.47□□□□□ -0.25
CCDC88C-201ENST00000331194 ZNF789Q5FWF6 425 aa13.47□□□□□ -0.25
CCDC88C-201ENST00000331194 AGAP7PQ5VUJ5 663 aa13.47□□□□□ -0.25
CCDC88C-201ENST00000331194 ARHGAP17Q68EM7 881 aa13.47□□□□□ -0.25
CCDC88C-201ENST00000331194 SLC26A9Q7LBE3 791 aa13.47□□□□□ -0.25
CCDC88C-201ENST00000331194 NDNFQ8TB73 568 aa13.47□□□□□ -0.25
CCDC88C-201ENST00000331194 TRPM4Q8TD43 1214 aa13.47□□□□□ -0.25
CCDC88C-201ENST00000331194 ZUFSPQ96AP4 578 aa13.47□□□□□ -0.25
CCDC88C-201ENST00000331194 FAM149B1Q96BN6 582 aa13.47□□□□□ -0.25
CCDC88C-201ENST00000331194 SDCCAG3Q96C92 435 aa13.47□□□□□ -0.25
CCDC88C-201ENST00000331194 SLC30A3Q99726 388 aa13.47□□□□□ -0.25
CCDC88C-201ENST00000331194 TUBA1CQ9BQE3 449 aa13.47□□□□□ -0.25
CCDC88C-201ENST00000331194 PSD2Q9BQI7 771 aa13.47□□□□□ -0.25
CCDC88C-201ENST00000331194 NIFKQ9BYG3 293 aaKnown RBP13.47□□□□□ -0.25
CCDC88C-201ENST00000331194 AKIP1Q9NQ31 210 aa13.47□□□□□ -0.25
CCDC88C-201ENST00000331194 CASS4Q9NQ75 786 aa13.47□□□□□ -0.25
CCDC88C-201ENST00000331194 ZNF229Q9UJW7 825 aa13.47□□□□□ -0.25
CCDC88C-201ENST00000331194 HACD1B0YJ81 288 aa13.46□□□□□ -0.25
CCDC88C-201ENST00000331194 STMN1P16949 149 aa13.46□□□□□ -0.25
CCDC88C-201ENST00000331194 GLUD2P49448 558 aa13.46□□□□□ -0.25
CCDC88C-201ENST00000331194 STAT5BP51692 787 aa13.46□□□□□ -0.25
CCDC88C-201ENST00000331194 EFNA5P52803 228 aa13.46□□□□□ -0.25
CCDC88C-201ENST00000331194 RABGGTBP53611 331 aa13.46□□□□□ -0.25
CCDC88C-201ENST00000331194 ATP6V0D1P61421 351 aa13.46□□□□□ -0.25
CCDC88C-201ENST00000331194 RBM20Q5T481 1227 aaKnown RBP13.46□□□□□ -0.25
CCDC88C-201ENST00000331194 ESRP1Q6NXG1 681 aaKnown RBP13.46□□□□□ -0.25
CCDC88C-201ENST00000331194 OTOP3Q7RTS5 596 aa13.46□□□□□ -0.25
CCDC88C-201ENST00000331194 HS3ST5Q8IZT8 346 aa13.46□□□□□ -0.25
CCDC88C-201ENST00000331194 EXT2Q93063 718 aa13.46□□□□□ -0.25
CCDC88C-201ENST00000331194 RNF145Q96MT1 663 aa13.46□□□□□ -0.25
CCDC88C-201ENST00000331194 C11orf84Q9BUA3 381 aaPredicted RBP13.46□□□□□ -0.25
CCDC88C-201ENST00000331194 CCDC90BQ9GZT6 254 aa13.46□□□□□ -0.25
CCDC88C-201ENST00000331194 AKTIPQ9H8T0 292 aa13.46□□□□□ -0.25
CCDC88C-201ENST00000331194 KLHL3Q9UH77 587 aa13.46□□□□□ -0.25
CCDC88C-201ENST00000331194 SLCO3A1Q9UIG8 710 aa13.46□□□□□ -0.25
CCDC88C-201ENST00000331194 ANKRD6Q9Y2G4 727 aa13.46□□□□□ -0.25
CCDC88C-201ENST00000331194 N6AMT1Q9Y5N5 214 aa13.46□□□□□ -0.25
CCDC88C-201ENST00000331194 LAMA2P24043 3122 aaKnown RBP13.46□□□□□ -0.25
CCDC88C-201ENST00000331194 SCN1AP35498 2009 aa13.46□□□□□ -0.25
CCDC88C-201ENST00000331194 AQP12BA6NM10 295 aa13.46□□□□□ -0.25
CCDC88C-201ENST00000331194 MAFO75444 373 aaPredicted RBP13.46□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 64.8 ms