RNA–Protein interactions for RNA: ENST00000323668.11

TCOF1-201, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene TCOF1, Length 4,832 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-201ENST00000323668 PLCL1Q15111 1095 aa14.76□□□□□ -0.05
TCOF1-201ENST00000323668 RGS21Q2M5E4 152 aa14.76□□□□□ -0.05
TCOF1-201ENST00000323668 ARMC3Q5W041 872 aa14.76□□□□□ -0.05
TCOF1-201ENST00000323668 NPY6RQ99463 290 aa14.76□□□□□ -0.05
TCOF1-201ENST00000323668 APOL4Q9BPW4 351 aa14.76□□□□□ -0.05
TCOF1-201ENST00000323668 TMEM161AQ9NX61 479 aa14.76□□□□□ -0.05
TCOF1-201ENST00000323668 USE1Q9NZ43 259 aa14.76□□□□□ -0.05
TCOF1-201ENST00000323668 KLQ9UEF7 1012 aa14.76□□□□□ -0.05
TCOF1-201ENST00000323668 TBC1D30Q9Y2I9 924 aa14.76□□□□□ -0.05
TCOF1-201ENST00000323668 PCDHB7Q9Y5E2 793 aa14.76□□□□□ -0.05
TCOF1-201ENST00000323668 IGKV6D-21A0A0A0MT36 114 aa14.75□□□□□ -0.05
TCOF1-201ENST00000323668 CCL22O00626 93 aa14.75□□□□□ -0.05
TCOF1-201ENST00000323668 CBFA2T3O75081 653 aa14.75□□□□□ -0.05
TCOF1-201ENST00000323668 CPSF4O95639 269 aaKnown RBP14.75□□□□□ -0.05
TCOF1-201ENST00000323668 DLGAP3O95886 979 aa14.75□□□□□ -0.05
TCOF1-201ENST00000323668 PPP3CCP48454 512 aa14.75□□□□□ -0.05
TCOF1-201ENST00000323668 PITRM1Q5JRX3 1037 aa14.75□□□□□ -0.05
TCOF1-201ENST00000323668 SPATA19Q7Z5L4 167 aa14.75□□□□□ -0.05
TCOF1-201ENST00000323668 SVOPQ8N4V2 548 aa14.75□□□□□ -0.05
TCOF1-201ENST00000323668 FBXO27Q8NI29 283 aa14.75□□□□□ -0.05
TCOF1-201ENST00000323668 RAD21L1Q9H4I0 556 aa14.75□□□□□ -0.05
TCOF1-201ENST00000323668 ZBTB26Q9HCK0 441 aa14.75□□□□□ -0.05
TCOF1-201ENST00000323668 STBD1O95210 358 aa14.75□□□□□ -0.05
TCOF1-201ENST00000323668 GPIP06744 558 aa14.75□□□□□ -0.05
TCOF1-201ENST00000323668 CHRNA4P43681 627 aa14.75□□□□□ -0.05
TCOF1-201ENST00000323668 HNRNPDQ14103 355 aaKnown RBP14.75□□□□□ -0.05
TCOF1-201ENST00000323668 GALNT3Q14435 633 aa14.75□□□□□ -0.05
TCOF1-201ENST00000323668 CXCL17Q6UXB2 119 aa14.75□□□□□ -0.05
TCOF1-201ENST00000323668 PROSER1Q86XN7 944 aa14.75□□□□□ -0.05
TCOF1-201ENST00000323668 PPP3R2Q96LZ3 170 aa14.75□□□□□ -0.05
TCOF1-201ENST00000323668 CDK5RAP1Q96SZ6 601 aaKnown RBP14.75□□□□□ -0.05
TCOF1-201ENST00000323668 CXorf21Q9HAI6 301 aa14.75□□□□□ -0.05
TCOF1-201ENST00000323668 PLK2Q9NYY3 685 aa14.75□□□□□ -0.05
TCOF1-201ENST00000323668 SPASTQ9UBP0 616 aa14.75□□□□□ -0.05
TCOF1-201ENST00000323668 MYCP01106 439 aaPredicted RBP14.75□□□□□ -0.05
TCOF1-201ENST00000323668 ALDH2P05091 517 aa14.75□□□□□ -0.05
TCOF1-201ENST00000323668 TOP3AQ13472 1001 aaPredicted RBP14.75□□□□□ -0.05
TCOF1-201ENST00000323668 FAM91A1Q658Y4 838 aa14.75□□□□□ -0.05
TCOF1-201ENST00000323668 HFE2Q6ZVN8 426 aa14.75□□□□□ -0.05
TCOF1-201ENST00000323668 TMEM132CQ8N3T6 1108 aa14.75□□□□□ -0.05
TCOF1-201ENST00000323668 LEMD2Q8NC56 503 aa14.75□□□□□ -0.05
TCOF1-201ENST00000323668 BPIFB6Q8NFQ5 453 aa14.75□□□□□ -0.05
TCOF1-201ENST00000323668 BORCS5Q969J3 196 aa14.75□□□□□ -0.05
TCOF1-201ENST00000323668 FTHL17Q9BXU8 183 aa14.75□□□□□ -0.05
TCOF1-201ENST00000323668 RIBC2Q9H4K1 309 aa14.75□□□□□ -0.05
TCOF1-201ENST00000323668 SMPD3Q9NY59 655 aaPredicted RBP14.75□□□□□ -0.05
TCOF1-201ENST00000323668 CNTN3Q9P232 1028 aa14.75□□□□□ -0.05
TCOF1-201ENST00000323668 ADAMTS6Q9UKP5 1117 aa14.75□□□□□ -0.05
TCOF1-201ENST00000323668 TIMM22Q9Y584 194 aa14.75□□□□□ -0.05
TCOF1-201ENST00000323668 TMEM233B4DJY2 109 aa14.75□□□□□ -0.05
TCOF1-201ENST00000323668 E9PAM4 449 aa14.75□□□□□ -0.05
TCOF1-201ENST00000323668 SLC7A4O43246 635 aa14.75□□□□□ -0.05
TCOF1-201ENST00000323668 BCAS2O75934 225 aaPredicted RBP14.75□□□□□ -0.05
TCOF1-201ENST00000323668 PAX3P23760 479 aa14.75□□□□□ -0.05
TCOF1-201ENST00000323668 HALP42357 657 aa14.75□□□□□ -0.05
TCOF1-201ENST00000323668 DGUOKQ16854 277 aa14.75□□□□□ -0.05
TCOF1-201ENST00000323668 ZNF618Q5T7W0 954 aa14.75□□□□□ -0.05
TCOF1-201ENST00000323668 SDHAF4Q5VUM1 108 aa14.75□□□□□ -0.05
TCOF1-201ENST00000323668 ADI1Q9BV57 179 aa14.75□□□□□ -0.05
TCOF1-201ENST00000323668 FAM126AQ9BYI3 521 aaPredicted RBP14.75□□□□□ -0.05
TCOF1-201ENST00000323668 SF3B1O75533 1304 aaKnown RBP eCLIP14.74□□□□□ -0.056e-6■■■■■ 114.9
TCOF1-201ENST00000323668 E7ENX8 843 aa14.74□□□□□ -0.05
TCOF1-201ENST00000323668 ANXA6P08133 673 aa14.74□□□□□ -0.05
TCOF1-201ENST00000323668 ST13P50502 369 aaKnown RBP14.74□□□□□ -0.05
TCOF1-201ENST00000323668 ELMOD1Q8N336 334 aa14.74□□□□□ -0.05
TCOF1-201ENST00000323668 ATAD3AQ9NVI7 634 aa14.74□□□□□ -0.05
TCOF1-201ENST00000323668 MAGEL2Q9UJ55 1249 aa14.74□□□□□ -0.05
TCOF1-201ENST00000323668 SH3BP1Q9Y3L3 701 aa14.74□□□□□ -0.05
TCOF1-201ENST00000323668 A0A0G2JLL6 359 aaPredicted RBP14.74□□□□□ -0.05
TCOF1-201ENST00000323668 CLCNKBP51801 687 aa14.74□□□□□ -0.05
TCOF1-201ENST00000323668 NR1D2Q14995 579 aa14.74□□□□□ -0.05
TCOF1-201ENST00000323668 GLYATQ6IB77 296 aa14.74□□□□□ -0.05
TCOF1-201ENST00000323668 KLHDC10Q6PID8 442 aa14.74□□□□□ -0.05
TCOF1-201ENST00000323668 PRRT2Q7Z6L0 340 aaPredicted RBP14.74□□□□□ -0.05
TCOF1-201ENST00000323668 MUC13Q9H3R2 512 aa14.74□□□□□ -0.05
TCOF1-201ENST00000323668 FAM20BO75063 409 aa14.74□□□□□ -0.05
TCOF1-201ENST00000323668 CST1P01037 141 aa14.74□□□□□ -0.05
TCOF1-201ENST00000323668 LPOP22079 712 aaPredicted RBP14.74□□□□□ -0.05
TCOF1-201ENST00000323668 DSC2Q02487 901 aa14.74□□□□□ -0.05
TCOF1-201ENST00000323668 LIPEQ05469 1076 aa14.74□□□□□ -0.05
TCOF1-201ENST00000323668 CCNIQ14094 377 aa14.74□□□□□ -0.05
TCOF1-201ENST00000323668 TRIM60Q495X7 471 aa14.74□□□□□ -0.05
TCOF1-201ENST00000323668 CCDC103Q8IW40 242 aa14.74□□□□□ -0.05
TCOF1-201ENST00000323668 RNF217Q8TC41 542 aa14.74□□□□□ -0.05
TCOF1-201ENST00000323668 KCTD13Q8WZ19 329 aa14.74□□□□□ -0.05
TCOF1-201ENST00000323668 SLC39A8Q9C0K1 460 aa14.74□□□□□ -0.05
TCOF1-201ENST00000323668 ULK1O75385 1050 aa14.73□□□□□ -0.05
TCOF1-201ENST00000323668 RPS9P46781 194 aaKnown RBP14.73□□□□□ -0.05
TCOF1-201ENST00000323668 RHDQ02161 417 aa14.73□□□□□ -0.05
TCOF1-201ENST00000323668 ELAVL2Q12926 359 aaKnown RBP14.73□□□□□ -0.05
TCOF1-201ENST00000323668 LCP2Q13094 533 aa14.73□□□□□ -0.05
TCOF1-201ENST00000323668 ARHGEF6Q15052 776 aa14.73□□□□□ -0.05
TCOF1-201ENST00000323668 STEAP4Q687X5 459 aa14.73□□□□□ -0.05
TCOF1-201ENST00000323668 RETSATQ6NUM9 610 aa14.73□□□□□ -0.05
TCOF1-201ENST00000323668 RRM2BQ7LG56 351 aa14.73□□□□□ -0.05
TCOF1-201ENST00000323668 OR7A2PQ8NGA2 310 aa14.73□□□□□ -0.05
TCOF1-201ENST00000323668 SH3KBP1Q96B97 665 aa14.73□□□□□ -0.05
TCOF1-201ENST00000323668 TOGARAM1Q9Y4F4 1720 aa14.73□□□□□ -0.05
TCOF1-201ENST00000323668 RPP40O75818 363 aaKnown RBP14.73□□□□□ -0.05
TCOF1-201ENST00000323668 PABPC4LP0CB38 370 aaKnown RBP14.73□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 15.9 ms