RNA–Protein interactions for RNA: ENST00000315249.11

RFFL-201, Transcript of ring finger and FYVE like domain containing E3 ubiquitin protein ligase, humanhuman

APPRIS P1 TSL 2 BASIC

Gene RFFL, Length 7,293 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFFL-201ENST00000315249 BBS12Q6ZW61 710 aa13.51□□□□□ -0.25
RFFL-201ENST00000315249 ADGRG2Q8IZP9 1017 aa13.51□□□□□ -0.25
RFFL-201ENST00000315249 SPATA22Q8NHS9 363 aa13.51□□□□□ -0.25
RFFL-201ENST00000315249 RAD21L1Q9H4I0 556 aa13.51□□□□□ -0.25
RFFL-201ENST00000315249 IL36AQ9UHA7 158 aa13.51□□□□□ -0.25
RFFL-201ENST00000315249 TMCO1Q9UM00 188 aa13.51□□□□□ -0.25
RFFL-201ENST00000315249 PRKCGP05129 697 aa13.51□□□□□ -0.25
RFFL-201ENST00000315249 RPL38P63173 70 aaKnown RBP13.51□□□□□ -0.25
RFFL-201ENST00000315249 GBE1Q04446 702 aa13.51□□□□□ -0.25
RFFL-201ENST00000315249 DMTNQ08495 405 aa13.51□□□□□ -0.25
RFFL-201ENST00000315249 OTUD3Q5T2D3 398 aaPredicted RBP13.51□□□□□ -0.25
RFFL-201ENST00000315249 POTEHQ6S545 545 aa13.51□□□□□ -0.25
RFFL-201ENST00000315249 PCDHB18PQ96TA0 734 aa13.51□□□□□ -0.25
RFFL-201ENST00000315249 SUCOQ9UBS9 1254 aaKnown RBP13.51□□□□□ -0.25
RFFL-201ENST00000315249 SMNDC1O75940 238 aaKnown RBP eCLIP13.5□□□□□ -0.25
RFFL-201ENST00000315249 ITGAXP20702 1163 aa13.5□□□□□ -0.25
RFFL-201ENST00000315249 SERPINB3P29508 390 aa13.5□□□□□ -0.25
RFFL-201ENST00000315249 ATXN1P54253 815 aaKnown RBP13.5□□□□□ -0.25
RFFL-201ENST00000315249 TCHHL1Q5QJ38 904 aaPredicted RBP13.5□□□□□ -0.25
RFFL-201ENST00000315249 MINDY3Q9H8M7 445 aa13.5□□□□□ -0.25
RFFL-201ENST00000315249 ZNF229Q9UJW7 825 aa13.5□□□□□ -0.25
RFFL-201ENST00000315249 ARIH1Q9Y4X5 557 aaPredicted RBP13.5□□□□□ -0.25
RFFL-201ENST00000315249 TMEM191CA6NGB0 347 aa13.5□□□□□ -0.25
RFFL-201ENST00000315249 CTSOP43234 321 aaPredicted RBP13.5□□□□□ -0.25
RFFL-201ENST00000315249 NCF4Q15080 339 aa13.5□□□□□ -0.25
RFFL-201ENST00000315249 TAF5Q15542 800 aa13.5□□□□□ -0.25
RFFL-201ENST00000315249 ANO7Q6IWH7 933 aa13.5□□□□□ -0.25
RFFL-201ENST00000315249 BPIFB1Q8TDL5 484 aa13.5□□□□□ -0.25
RFFL-201ENST00000315249 FUBP3Q96I24 572 aaKnown RBP eCLIP13.5□□□□□ -0.25
RFFL-201ENST00000315249 EQTNQ9NQ60 294 aa13.5□□□□□ -0.25
RFFL-201ENST00000315249 NUP98P52948 1817 aa13.5□□□□□ -0.25
RFFL-201ENST00000315249 A0A1W2PQ67 120 aa13.5□□□□□ -0.25
RFFL-201ENST00000315249 IFI35P80217 286 aaPredicted RBP13.5□□□□□ -0.25
RFFL-201ENST00000315249 CAPN13Q6MZZ7 669 aaPredicted RBP13.5□□□□□ -0.25
RFFL-201ENST00000315249 TMEM220Q6QAJ8 160 aa13.5□□□□□ -0.25
RFFL-201ENST00000315249 TMEM26Q6ZUK4 368 aa13.5□□□□□ -0.25
RFFL-201ENST00000315249 GPRIN3Q6ZVF9 776 aa13.5□□□□□ -0.25
RFFL-201ENST00000315249 POU5F2Q8N7G0 328 aa13.5□□□□□ -0.25
RFFL-201ENST00000315249 KYQ8NBH2 561 aa13.5□□□□□ -0.25
RFFL-201ENST00000315249 AIF1LQ9BQI0 150 aa13.5□□□□□ -0.25
RFFL-201ENST00000315249 BRINP2Q9C0B6 783 aa13.5□□□□□ -0.25
RFFL-201ENST00000315249 B4DGG1 531 aa13.5□□□□□ -0.25
RFFL-201ENST00000315249 RPP40O75818 363 aaKnown RBP13.5□□□□□ -0.25
RFFL-201ENST00000315249 POMZP3Q6PJE2 187 aa13.5□□□□□ -0.25
RFFL-201ENST00000315249 CLP1Q92989 425 aaKnown RBP13.5□□□□□ -0.25
RFFL-201ENST00000315249 CCSER2Q9H7U1 834 aa13.5□□□□□ -0.25
RFFL-201ENST00000315249 ZNF711Q9Y462 761 aa13.5□□□□□ -0.25
RFFL-201ENST00000315249 A0A0U1RQJ8 604 aa13.5□□□□□ -0.25
RFFL-201ENST00000315249 GRIA4P48058 902 aa13.5□□□□□ -0.25
RFFL-201ENST00000315249 NEK3P51956 506 aa13.5□□□□□ -0.25
RFFL-201ENST00000315249 SOWAHAQ2M3V2 549 aa13.5□□□□□ -0.25
RFFL-201ENST00000315249 EOGTQ5NDL2 527 aa13.5□□□□□ -0.25
RFFL-201ENST00000315249 WDR93Q6P2C0 686 aa13.5□□□□□ -0.25
RFFL-201ENST00000315249 ZSCAN18Q8TBC5 510 aaPredicted RBP13.5□□□□□ -0.25
RFFL-201ENST00000315249 TSC22D3Q99576 134 aa13.5□□□□□ -0.25
RFFL-201ENST00000315249 FBXL12Q9NXK8 326 aa13.5□□□□□ -0.25
RFFL-201ENST00000315249 TAGLN3Q9UI15 199 aa13.5□□□□□ -0.25
RFFL-201ENST00000315249 PRMT5O14744 637 aaPredicted RBP13.49□□□□□ -0.25
RFFL-201ENST00000315249 RGS5O15539 181 aa13.49□□□□□ -0.25
RFFL-201ENST00000315249 LPIN1Q14693 890 aa13.49□□□□□ -0.25
RFFL-201ENST00000315249 NDUFA9Q16795 377 aa13.49□□□□□ -0.25
RFFL-201ENST00000315249 FAM187BQ17R55 369 aa13.49□□□□□ -0.25
RFFL-201ENST00000315249 TBCELQ5QJ74 424 aa13.49□□□□□ -0.25
RFFL-201ENST00000315249 TFAP2BQ92481 460 aa13.49□□□□□ -0.25
RFFL-201ENST00000315249 NCANO14594 1321 aa13.49□□□□□ -0.25
RFFL-201ENST00000315249 HGFP14210 728 aa13.49□□□□□ -0.25
RFFL-201ENST00000315249 PAICSP22234 425 aaKnown RBP13.49□□□□□ -0.25
RFFL-201ENST00000315249 SLC20A2Q08357 652 aa13.49□□□□□ -0.25
RFFL-201ENST00000315249 MSLNQ13421 630 aaPredicted RBP13.49□□□□□ -0.25
RFFL-201ENST00000315249 RCN1Q15293 331 aa13.49□□□□□ -0.25
RFFL-201ENST00000315249 ARHGAP17Q68EM7 881 aa13.49□□□□□ -0.25
RFFL-201ENST00000315249 SLC39A5Q6ZMH5 540 aa13.49□□□□□ -0.25
RFFL-201ENST00000315249 LEMD2Q8NC56 503 aa13.49□□□□□ -0.25
RFFL-201ENST00000315249 STYXQ8WUJ0 223 aa13.49□□□□□ -0.25
RFFL-201ENST00000315249 PWWP2AQ96N64 755 aa13.49□□□□□ -0.25
RFFL-201ENST00000315249 EBNA1BP2Q99848 306 aaKnown RBP13.49□□□□□ -0.25
RFFL-201ENST00000315249 TDP1Q9NUW8 608 aa13.49□□□□□ -0.25
RFFL-201ENST00000315249 KCTD5Q9NXV2 234 aa13.49□□□□□ -0.25
RFFL-201ENST00000315249 SRLQ86TD4 932 aa13.49□□□□□ -0.25
RFFL-201ENST00000315249 SLC9A7Q96T83 725 aa13.49□□□□□ -0.25
RFFL-201ENST00000315249 MYH8P13535 1937 aa13.49□□□□□ -0.25
RFFL-201ENST00000315249 SCN2BO60939 215 aa13.49□□□□□ -0.25
RFFL-201ENST00000315249 OTCP00480 354 aa13.49□□□□□ -0.25
RFFL-201ENST00000315249 F2P00734 622 aa13.49□□□□□ -0.25
RFFL-201ENST00000315249 HOXB2P14652 356 aa13.49□□□□□ -0.25
RFFL-201ENST00000315249 FOSL2P15408 326 aa13.49□□□□□ -0.25
RFFL-201ENST00000315249 MASP1P48740 699 aa13.49□□□□□ -0.25
RFFL-201ENST00000315249 MBLAC2Q68D91 279 aa13.49□□□□□ -0.25
RFFL-201ENST00000315249 ESRP1Q6NXG1 681 aaKnown RBP13.49□□□□□ -0.25
RFFL-201ENST00000315249 BHLHB9Q6PI77 547 aa13.49□□□□□ -0.25
RFFL-201ENST00000315249 EID3Q8N140 333 aa13.49□□□□□ -0.25
RFFL-201ENST00000315249 LYVE1Q9Y5Y7 322 aa13.49□□□□□ -0.25
RFFL-201ENST00000315249 A8MU76 341 aa13.49□□□□□ -0.25
RFFL-201ENST00000315249 LINC00032P0C843 101 aa13.49□□□□□ -0.25
RFFL-201ENST00000315249 IFNGR2P38484 337 aa13.49□□□□□ -0.25
RFFL-201ENST00000315249 MANFP55145 182 aaKnown RBP13.49□□□□□ -0.25
RFFL-201ENST00000315249 TAPT1Q6NXT6 567 aa13.49□□□□□ -0.25
RFFL-201ENST00000315249 CASP12Q6UXS9 341 aa13.49□□□□□ -0.25
RFFL-201ENST00000315249 THAP11Q96EK4 314 aa13.49□□□□□ -0.25
RFFL-201ENST00000315249 NKX2-4Q9H2Z4 354 aa13.49□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 39.7 ms