RNA–Protein interactions for RNA: ENST00000292510.5

VPS28-201, Transcript of VPS28, ESCRT-I subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS28, Length 979 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-201ENST00000292510 SPATA13Q96N96 652 aa13.38□□□□□ -0.27
VPS28-201ENST00000292510 CAMK1GQ96NX5 476 aa13.38□□□□□ -0.27
VPS28-201ENST00000292510 TMEM121Q9BTD3 319 aa13.38□□□□□ -0.27
VPS28-201ENST00000292510 MLPHQ9BV36 600 aaPredicted RBP13.38□□□□□ -0.27
VPS28-201ENST00000292510 ADGRE3Q9BY15 652 aa13.38□□□□□ -0.27
VPS28-201ENST00000292510 GBA3Q9H227 469 aa13.38□□□□□ -0.27
VPS28-201ENST00000292510 GPR27Q9NS67 375 aa13.38□□□□□ -0.27
VPS28-201ENST00000292510 CD84Q9UIB8 345 aa13.38□□□□□ -0.27
VPS28-201ENST00000292510 RPL26L1Q9UNX3 145 aaKnown RBP13.38□□□□□ -0.27
VPS28-201ENST00000292510 OR1A2Q9Y585 309 aa13.38□□□□□ -0.27
VPS28-201ENST00000292510 K7ESM1 405 aa13.37□□□□□ -0.27
VPS28-201ENST00000292510 LIASO43766 372 aa13.37□□□□□ -0.27
VPS28-201ENST00000292510 SH3BP5O60239 455 aa13.37□□□□□ -0.27
VPS28-201ENST00000292510 SDC3O75056 442 aa13.37□□□□□ -0.27
VPS28-201ENST00000292510 STK10O94804 968 aaKnown RBP13.37□□□□□ -0.27
VPS28-201ENST00000292510 FGGP02679 453 aa13.37□□□□□ -0.27
VPS28-201ENST00000292510 ATXN1LP0C7T5 689 aaKnown RBP13.37□□□□□ -0.27
VPS28-201ENST00000292510 CHRNA4P43681 627 aa13.37□□□□□ -0.27
VPS28-201ENST00000292510 OLIG2Q13516 323 aa13.37□□□□□ -0.27
VPS28-201ENST00000292510 FZD2Q14332 565 aa13.37□□□□□ -0.27
VPS28-201ENST00000292510 CDKN3Q16667 212 aa13.37□□□□□ -0.27
VPS28-201ENST00000292510 ITPRIPL1Q6GPH6 555 aa13.37□□□□□ -0.27
VPS28-201ENST00000292510 Q6ZVL8 140 aa13.37□□□□□ -0.27
VPS28-201ENST00000292510 TAB3Q8N5C8 712 aaPredicted RBP13.37□□□□□ -0.27
VPS28-201ENST00000292510 SLC25A41Q8N5S1 370 aa13.37□□□□□ -0.27
VPS28-201ENST00000292510 IPMKQ8NFU5 416 aa13.37□□□□□ -0.27
VPS28-201ENST00000292510 FAM174AQ8TBP5 190 aa13.37□□□□□ -0.27
VPS28-201ENST00000292510 DTD2Q96FN9 168 aa13.37□□□□□ -0.27
VPS28-201ENST00000292510 ERVMER34-1Q9H9K5 563 aa13.37□□□□□ -0.27
VPS28-201ENST00000292510 PNMA8BQ9ULN7 279 aaPredicted RBP13.37□□□□□ -0.27
VPS28-201ENST00000292510 SHOC2Q9UQ13 582 aa13.37□□□□□ -0.27
VPS28-201ENST00000292510 BTBD3Q9Y2F9 522 aa13.37□□□□□ -0.27
VPS28-201ENST00000292510 JRKLQ9Y4A0 524 aa13.37□□□□□ -0.27
VPS28-201ENST00000292510 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP13.37□□□□□ -0.27
VPS28-201ENST00000292510 SPEGQ15772 3267 aa13.37□□□□□ -0.27
VPS28-201ENST00000292510 C1orf232A0A0U1RR37 186 aa13.36□□□□□ -0.27
VPS28-201ENST00000292510 SPTY2D1-AS1A0A0U1RR47 76 aa13.36□□□□□ -0.27
VPS28-201ENST00000292510 LOC285095A0A1B0GVY8 99 aa13.36□□□□□ -0.27
VPS28-201ENST00000292510 C5orf60A6NFR6 353 aa13.36□□□□□ -0.27
VPS28-201ENST00000292510 PSMD11O00231 422 aa13.36□□□□□ -0.27
VPS28-201ENST00000292510 GIPC1O14908 333 aa13.36□□□□□ -0.27
VPS28-201ENST00000292510 KIF5CO60282 957 aa13.36□□□□□ -0.27
VPS28-201ENST00000292510 NDST3O95803 873 aa13.36□□□□□ -0.27
VPS28-201ENST00000292510 SLC4A1P02730 911 aa13.36□□□□□ -0.27
VPS28-201ENST00000292510 ZNF883P0CG24 379 aa13.36□□□□□ -0.27
VPS28-201ENST00000292510 EPHA8P29322 1005 aaPredicted RBP13.36□□□□□ -0.27
VPS28-201ENST00000292510 STC1P52823 247 aa13.36□□□□□ -0.27
VPS28-201ENST00000292510 THOP1P52888 689 aa13.36□□□□□ -0.27
VPS28-201ENST00000292510 EIF2B5Q13144 721 aaKnown RBP13.36□□□□□ -0.27
VPS28-201ENST00000292510 SLC14A1Q13336 389 aa13.36□□□□□ -0.27
VPS28-201ENST00000292510 MPP3Q13368 585 aa13.36□□□□□ -0.27
VPS28-201ENST00000292510 MTM1Q13496 603 aa13.36□□□□□ -0.27
VPS28-201ENST00000292510 OASLQ15646 514 aaKnown RBP13.36□□□□□ -0.27
VPS28-201ENST00000292510 LONRF2Q1L5Z9 754 aa13.36□□□□□ -0.27
VPS28-201ENST00000292510 LYSMD3Q7Z3D4 306 aa13.36□□□□□ -0.27
VPS28-201ENST00000292510 DGLUCYQ7Z3D6 616 aa13.36□□□□□ -0.27
VPS28-201ENST00000292510 TECPR1Q7Z6L1 1165 aa13.36□□□□□ -0.27
VPS28-201ENST00000292510 PIP4P1Q86T03 277 aa13.36□□□□□ -0.27
VPS28-201ENST00000292510 PRUNE1Q86TP1 453 aa13.36□□□□□ -0.27
VPS28-201ENST00000292510 DCP2Q8IU60 420 aaKnown RBP13.36□□□□□ -0.27
VPS28-201ENST00000292510 NAXDQ8IW45 347 aa13.36□□□□□ -0.27
VPS28-201ENST00000292510 EID2BQ96D98 161 aa13.36□□□□□ -0.27
VPS28-201ENST00000292510 LYSMD1Q96S90 227 aa13.36□□□□□ -0.27
VPS28-201ENST00000292510 APOOQ9BUR5 198 aa13.36□□□□□ -0.27
VPS28-201ENST00000292510 FICDQ9BVA6 458 aa13.36□□□□□ -0.27
VPS28-201ENST00000292510 DNAJC28Q9NX36 388 aa13.36□□□□□ -0.27
VPS28-201ENST00000292510 KLF15Q9UIH9 416 aa13.36□□□□□ -0.27
VPS28-201ENST00000292510 SPO11Q9Y5K1 396 aa13.36□□□□□ -0.27
VPS28-201ENST00000292510 CACNA1AO00555 2505 aa13.35□□□□□ -0.27
VPS28-201ENST00000292510 GOLGA6CA6NDK9 693 aa13.35□□□□□ -0.27
VPS28-201ENST00000292510 GOLGA6BA6NDN3 693 aa13.35□□□□□ -0.27
VPS28-201ENST00000292510 AURKAO14965 403 aa13.35□□□□□ -0.27
VPS28-201ENST00000292510 PCDHGA12O60330 932 aa13.35□□□□□ -0.27
VPS28-201ENST00000292510 DFNA5O60443 496 aa13.35□□□□□ -0.27
VPS28-201ENST00000292510 KCNK5O95279 499 aa13.35□□□□□ -0.27
VPS28-201ENST00000292510 METTL18O95568 372 aa13.35□□□□□ -0.27
VPS28-201ENST00000292510 AGTP01019 485 aa13.35□□□□□ -0.27
VPS28-201ENST00000292510 GOLGA6DP0CG33 693 aa13.35□□□□□ -0.27
VPS28-201ENST00000292510 ZNF30P17039 623 aa13.35□□□□□ -0.27
VPS28-201ENST00000292510 RXRGP48443 463 aa13.35□□□□□ -0.27
VPS28-201ENST00000292510 ARRB1P49407 418 aaPredicted RBP13.35□□□□□ -0.27
VPS28-201ENST00000292510 NOVA1P51513 510 aaKnown RBP13.35□□□□□ -0.27
VPS28-201ENST00000292510 GEMP55040 296 aa13.35□□□□□ -0.27
VPS28-201ENST00000292510 YPEL5P62699 121 aa13.35□□□□□ -0.27
VPS28-201ENST00000292510 SPARCL1Q14515 664 aa13.35□□□□□ -0.27
VPS28-201ENST00000292510 KCTD19Q17RG1 926 aaPredicted RBP13.35□□□□□ -0.27
VPS28-201ENST00000292510 SIRPB2Q5JXA9 342 aa13.35□□□□□ -0.27
VPS28-201ENST00000292510 FAXCQ5TGI0 409 aa13.35□□□□□ -0.27
VPS28-201ENST00000292510 KCTD16Q68DU8 428 aa13.35□□□□□ -0.27
VPS28-201ENST00000292510 CCDC70Q6NSX1 233 aa13.35□□□□□ -0.27
VPS28-201ENST00000292510 PSAPL1Q6NUJ1 521 aa13.35□□□□□ -0.27
VPS28-201ENST00000292510 ESRP1Q6NXG1 681 aaKnown RBP13.35□□□□□ -0.27
VPS28-201ENST00000292510 PNCKQ6P2M8 343 aa13.35□□□□□ -0.27
VPS28-201ENST00000292510 DBX2Q6ZNG2 339 aa13.35□□□□□ -0.27
VPS28-201ENST00000292510 ARHGEF18Q6ZSZ5 1173 aa13.35□□□□□ -0.27
VPS28-201ENST00000292510 PARGQ86W56 976 aa13.35□□□□□ -0.27
VPS28-201ENST00000292510 OXR1Q8N573 874 aa13.35□□□□□ -0.27
VPS28-201ENST00000292510 SAP25Q8TEE9 199 aa13.35□□□□□ -0.27
VPS28-201ENST00000292510 SETD7Q8WTS6 366 aaKnown RBP13.35□□□□□ -0.27
VPS28-201ENST00000292510 SCAMP4Q969E2 229 aa13.35□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 58.4 ms