RNA–Protein interactions for RNA: ENST00000636147.1

CLN3-244, Transcript of CLN3, battenin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLN3, Length 3,832 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-244ENST00000636147 CCNYL2Q5T2Q4 361 aa11.07□□□□□ -0.64
CLN3-244ENST00000636147 ANKS6Q68DC2 871 aa11.07□□□□□ -0.64
CLN3-244ENST00000636147 GLYATQ6IB77 296 aa11.07□□□□□ -0.64
CLN3-244ENST00000636147 PKN3Q6P5Z2 889 aa11.07□□□□□ -0.64
CLN3-244ENST00000636147 ARMCX6Q7L4S7 300 aa11.07□□□□□ -0.64
CLN3-244ENST00000636147 ERMP1Q7Z2K6 904 aa11.07□□□□□ -0.64
CLN3-244ENST00000636147 ZC3HC1Q86WB0 502 aaKnown RBP11.07□□□□□ -0.64
CLN3-244ENST00000636147 METTL23Q86XA0 190 aa11.07□□□□□ -0.64
CLN3-244ENST00000636147 SPNS2Q8IVW8 549 aa11.07□□□□□ -0.64
CLN3-244ENST00000636147 SLC15A4Q8N697 577 aa11.07□□□□□ -0.64
CLN3-244ENST00000636147 ATG16L2Q8NAA4 619 aa11.07□□□□□ -0.64
CLN3-244ENST00000636147 TXNDC5Q8NBS9 432 aaKnown RBP11.07□□□□□ -0.64
CLN3-244ENST00000636147 AFG1LQ8WV93 481 aa11.07□□□□□ -0.64
CLN3-244ENST00000636147 TBRG4Q969Z0 631 aaKnown RBP eCLIP11.07□□□□□ -0.64
CLN3-244ENST00000636147 HERC2P3Q9BVR0 1158 aa11.07□□□□□ -0.64
CLN3-244ENST00000636147 ALG2Q9H553 416 aa11.07□□□□□ -0.64
CLN3-244ENST00000636147 TBCCD1Q9NVR7 557 aa11.07□□□□□ -0.64
CLN3-244ENST00000636147 HSFX1Q9UBD0 423 aa11.07□□□□□ -0.64
CLN3-244ENST00000636147 A0A087X1B8 175 aa11.06□□□□□ -0.64
CLN3-244ENST00000636147 DYTNA2CJ06 578 aa11.06□□□□□ -0.64
CLN3-244ENST00000636147 TCAF2A6NFQ2 919 aa11.06□□□□□ -0.64
CLN3-244ENST00000636147 RAD51BO15315 384 aa11.06□□□□□ -0.64
CLN3-244ENST00000636147 GRID2O43424 1007 aa11.06□□□□□ -0.64
CLN3-244ENST00000636147 RECQL4O94761 1208 aa11.06□□□□□ -0.64
CLN3-244ENST00000636147 CST1P01037 141 aa11.06□□□□□ -0.64
CLN3-244ENST00000636147 CCDC159P0C7I6 412 aa11.06□□□□□ -0.64
CLN3-244ENST00000636147 PTPRAP18433 802 aa11.06□□□□□ -0.64
CLN3-244ENST00000636147 GLDCP23378 1020 aa11.06□□□□□ -0.64
CLN3-244ENST00000636147 ARRB2P32121 409 aa11.06□□□□□ -0.64
CLN3-244ENST00000636147 CLDN10P78369 228 aa11.06□□□□□ -0.64
CLN3-244ENST00000636147 BNIP2Q12982 314 aa11.06□□□□□ -0.64
CLN3-244ENST00000636147 TUBB3Q13509 450 aa11.06□□□□□ -0.64
CLN3-244ENST00000636147 SYPL2Q5VXT5 272 aa11.06□□□□□ -0.64
CLN3-244ENST00000636147 TRNP1Q6NT89 227 aa11.06□□□□□ -0.64
CLN3-244ENST00000636147 GALNT5Q7Z7M9 940 aa11.06□□□□□ -0.64
CLN3-244ENST00000636147 GPR180Q86V85 440 aa11.06□□□□□ -0.64
CLN3-244ENST00000636147 SNX29P2Q8IUI4 249 aa11.06□□□□□ -0.64
CLN3-244ENST00000636147 TBC1D21Q8IYX1 336 aa11.06□□□□□ -0.64
CLN3-244ENST00000636147 CDYL2Q8N8U2 506 aa11.06□□□□□ -0.64
CLN3-244ENST00000636147 TMEM74Q96NL1 305 aa11.06□□□□□ -0.64
CLN3-244ENST00000636147 APOL5Q9BWW9 433 aa11.06□□□□□ -0.64
CLN3-244ENST00000636147 SACM1LQ9NTJ5 587 aa11.06□□□□□ -0.64
CLN3-244ENST00000636147 SLC2A6Q9UGQ3 507 aa11.06□□□□□ -0.64
CLN3-244ENST00000636147 ITGB1BP2Q9UKP3 347 aa11.06□□□□□ -0.64
CLN3-244ENST00000636147 VWA7Q9Y334 891 aa11.06□□□□□ -0.64
CLN3-244ENST00000636147 ALS2Q96Q42 1657 aa11.06□□□□□ -0.64
CLN3-244ENST00000636147 M0QZ92 97 aa11.06□□□□□ -0.64
CLN3-244ENST00000636147 PIP5K1BO14986 540 aa11.06□□□□□ -0.64
CLN3-244ENST00000636147 DEFA1P59665 94 aa11.06□□□□□ -0.64
CLN3-244ENST00000636147 DEFA3P59666 94 aa11.06□□□□□ -0.64
CLN3-244ENST00000636147 ADAM17P78536 824 aa11.06□□□□□ -0.64
CLN3-244ENST00000636147 ENPEPQ07075 957 aa11.06□□□□□ -0.64
CLN3-244ENST00000636147 NIPAL4Q0D2K0 466 aa11.06□□□□□ -0.64
CLN3-244ENST00000636147 PRR23BQ6ZRT6 265 aa11.06□□□□□ -0.64
CLN3-244ENST00000636147 CTU1Q7Z7A3 348 aaKnown RBP11.06□□□□□ -0.64
CLN3-244ENST00000636147 CEP44Q9C0F1 390 aa11.06□□□□□ -0.64
CLN3-244ENST00000636147 WDR70Q9NW82 654 aa11.06□□□□□ -0.64
CLN3-244ENST00000636147 FAM8A1Q9UBU6 413 aa11.06□□□□□ -0.64
CLN3-244ENST00000636147 TMX2-CTNND1H3BSU7 103 aa11.06□□□□□ -0.64
CLN3-244ENST00000636147 SNPHO15079 494 aa11.06□□□□□ -0.64
CLN3-244ENST00000636147 BNIP3LO60238 219 aa11.06□□□□□ -0.64
CLN3-244ENST00000636147 FAM20BO75063 409 aa11.06□□□□□ -0.64
CLN3-244ENST00000636147 FTH1P02794 183 aa11.06□□□□□ -0.64
CLN3-244ENST00000636147 ZNF37AP17032 561 aaPredicted RBP11.06□□□□□ -0.64
CLN3-244ENST00000636147 INPP1P49441 399 aa11.06□□□□□ -0.64
CLN3-244ENST00000636147 ST13P50502 369 aaKnown RBP11.06□□□□□ -0.64
CLN3-244ENST00000636147 HK2P52789 917 aa11.06□□□□□ -0.64
CLN3-244ENST00000636147 MOGQ16653 247 aa11.06□□□□□ -0.64
CLN3-244ENST00000636147 NOMO2Q5JPE7 1267 aa11.06□□□□□ -0.64
CLN3-244ENST00000636147 RBM20Q5T481 1227 aaKnown RBP11.06□□□□□ -0.64
CLN3-244ENST00000636147 MRNIPQ6NTE8 343 aa11.06□□□□□ -0.64
CLN3-244ENST00000636147 STRADAQ7RTN6 431 aa11.06□□□□□ -0.64
CLN3-244ENST00000636147 THAP5Q7Z6K1 395 aa11.06□□□□□ -0.64
CLN3-244ENST00000636147 SLC7A5P1Q8MH63 180 aa11.06□□□□□ -0.64
CLN3-244ENST00000636147 METTL6Q8TCB7 284 aa11.06□□□□□ -0.64
CLN3-244ENST00000636147 MUS81Q96NY9 551 aa11.06□□□□□ -0.64
CLN3-244ENST00000636147 HOPXQ9BPY8 73 aaPredicted RBP11.06□□□□□ -0.64
CLN3-244ENST00000636147 NIFKQ9BYG3 293 aaKnown RBP11.06□□□□□ -0.64
CLN3-244ENST00000636147 PRDM16Q9HAZ2 1276 aa11.06□□□□□ -0.64
CLN3-244ENST00000636147 ZMYM5Q9UJ78 669 aa11.06□□□□□ -0.64
CLN3-244ENST00000636147 LRP5O75197 1615 aa11.06□□□□□ -0.64
CLN3-244ENST00000636147 RBM47A0AV96 593 aaKnown RBP11.05□□□□□ -0.64
CLN3-244ENST00000636147 ARPC2O15144 300 aa11.05□□□□□ -0.64
CLN3-244ENST00000636147 SOAT2O75908 522 aa11.05□□□□□ -0.64
CLN3-244ENST00000636147 MYO1DO94832 1006 aa11.05□□□□□ -0.64
CLN3-244ENST00000636147 GLP2RO95838 553 aa11.05□□□□□ -0.64
CLN3-244ENST00000636147 SLC2A4P14672 509 aa11.05□□□□□ -0.64
CLN3-244ENST00000636147 SLC1A2P43004 574 aa11.05□□□□□ -0.64
CLN3-244ENST00000636147 PTPN9P43378 593 aa11.05□□□□□ -0.64
CLN3-244ENST00000636147 CCT8P50990 548 aa11.05□□□□□ -0.64
CLN3-244ENST00000636147 GRM1Q13255 1194 aa11.05□□□□□ -0.64
CLN3-244ENST00000636147 HERC3Q15034 1050 aa11.05□□□□□ -0.64
CLN3-244ENST00000636147 SV2CQ496J9 727 aa11.05□□□□□ -0.64
CLN3-244ENST00000636147 WSCD1Q658N2 575 aa11.05□□□□□ -0.64
CLN3-244ENST00000636147 DNERQ8NFT8 737 aa11.05□□□□□ -0.64
CLN3-244ENST00000636147 HASPINQ8TF76 798 aa11.05□□□□□ -0.64
CLN3-244ENST00000636147 ACOX2Q99424 681 aa11.05□□□□□ -0.64
CLN3-244ENST00000636147 ZBED2Q9BTP6 218 aa11.05□□□□□ -0.64
CLN3-244ENST00000636147 YIPF2Q9BWQ6 316 aa11.05□□□□□ -0.64
CLN3-244ENST00000636147 TRIM39Q9HCM9 518 aa11.05□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 40 ms