RNA–Protein interactions for RNA: ENST00000600012.5

UPF1-208, Transcript of UPF1, RNA helicase and ATPase, human

TSL 5

Gene UPF1, Length 501 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
UPF1-208	ENST00000600012	RETREG1	Q9H6L5	497 aa		12.8	□□□□□ -0.36
UPF1-208	ENST00000600012	PAK5	Q9P286	719 aa		12.8	□□□□□ -0.36
UPF1-208	ENST00000600012	KLHL8	Q9P2G9	620 aa	Predicted RBP	12.8	□□□□□ -0.36
UPF1-208	ENST00000600012	SLCO3A1	Q9UIG8	710 aa		12.8	□□□□□ -0.36
UPF1-208	ENST00000600012	TBC1D30	Q9Y2I9	924 aa		12.8	□□□□□ -0.36
UPF1-208	ENST00000600012	DOCK9	Q9BZ29	2069 aa		12.8	□□□□□ -0.36
UPF1-208	ENST00000600012	CELSR3	Q9NYQ7	3312 aa		12.79	□□□□□ -0.36
UPF1-208	ENST00000600012	ILVBL	A1L0T0	632 aa		12.79	□□□□□ -0.36
UPF1-208	ENST00000600012	DYNC1I1	O14576	645 aa		12.79	□□□□□ -0.36
UPF1-208	ENST00000600012	LAT	O43561	262 aa		12.79	□□□□□ -0.36
UPF1-208	ENST00000600012	GCAT	O75600	419 aa		12.79	□□□□□ -0.36
UPF1-208	ENST00000600012	RFPL3	O75679	317 aa		12.79	□□□□□ -0.36
UPF1-208	ENST00000600012	STK10	O94804	968 aa	Known RBP	12.79	□□□□□ -0.36
UPF1-208	ENST00000600012	SEC31A	O94979	1220 aa	Known RBP	12.79	□□□□□ -0.36
UPF1-208	ENST00000600012	IL1B	P01584	269 aa		12.79	□□□□□ -0.36
UPF1-208	ENST00000600012	JCHAIN	P01591	159 aa		12.79	□□□□□ -0.36
UPF1-208	ENST00000600012	GLDC	P23378	1020 aa		12.79	□□□□□ -0.36
UPF1-208	ENST00000600012	MCM3	P25205	808 aa		12.79	□□□□□ -0.36
UPF1-208	ENST00000600012	MZF1	P28698	734 aa	Predicted RBP	12.79	□□□□□ -0.36
UPF1-208	ENST00000600012	EPHA8	P29322	1005 aa	Predicted RBP	12.79	□□□□□ -0.36
UPF1-208	ENST00000600012	ACTN2	P35609	894 aa		12.79	□□□□□ -0.36
UPF1-208	ENST00000600012	ITGA8	P53708	1063 aa		12.79	□□□□□ -0.36
UPF1-208	ENST00000600012	BASP1	P80723	227 aa	Known RBP	12.79	□□□□□ -0.36
UPF1-208	ENST00000600012	SULT2A1	Q06520	285 aa		12.79	□□□□□ -0.36
UPF1-208	ENST00000600012	CALCOCO2	Q13137	446 aa		12.79	□□□□□ -0.36
UPF1-208	ENST00000600012	SERINC3	Q13530	473 aa		12.79	□□□□□ -0.36
UPF1-208	ENST00000600012	CUL1	Q13616	776 aa		12.79	□□□□□ -0.36
UPF1-208	ENST00000600012	SHB	Q15464	509 aa		12.79	□□□□□ -0.36
UPF1-208	ENST00000600012	ANKRD20A2	Q5SQ80	823 aa		12.79	□□□□□ -0.36
UPF1-208	ENST00000600012	ANKRD20A1	Q5TYW2	823 aa		12.79	□□□□□ -0.36
UPF1-208	ENST00000600012	ANKRD20A3	Q5VUR7	823 aa		12.79	□□□□□ -0.36
UPF1-208	ENST00000600012	TIGD7	Q6NT04	549 aa	Predicted RBP	12.79	□□□□□ -0.36
UPF1-208	ENST00000600012	FBXO38	Q6PIJ6	1188 aa		12.79	□□□□□ -0.36
UPF1-208	ENST00000600012	ARHGEF18	Q6ZSZ5	1173 aa		12.79	□□□□□ -0.36
UPF1-208	ENST00000600012	SETD3	Q86TU7	594 aa	Predicted RBP	12.79	□□□□□ -0.36
UPF1-208	ENST00000600012	APCDD1	Q8J025	514 aa		12.79	□□□□□ -0.36
UPF1-208	ENST00000600012	LRRC45	Q96CN5	670 aa		12.79	□□□□□ -0.36
UPF1-208	ENST00000600012	RPL10L	Q96L21	214 aa	Known RBP	12.79	□□□□□ -0.36
UPF1-208	ENST00000600012	FERMT1	Q9BQL6	677 aa		12.79	□□□□□ -0.36
UPF1-208	ENST00000600012	SPON2	Q9BUD6	331 aa		12.79	□□□□□ -0.36
UPF1-208	ENST00000600012	MUC3B	Q9H195	1237 aa		12.79	□□□□□ -0.36
UPF1-208	ENST00000600012	ERVMER34-1	Q9H9K5	563 aa		12.79	□□□□□ -0.36
UPF1-208	ENST00000600012	ATP13A1	Q9HD20	1204 aa		12.79	□□□□□ -0.36
UPF1-208	ENST00000600012	WHRN	Q9P202	907 aa		12.79	□□□□□ -0.36
UPF1-208	ENST00000600012	TLR4	O00206	839 aa		12.78	□□□□□ -0.36
UPF1-208	ENST00000600012	CBX4	O00257	560 aa		12.78	□□□□□ -0.36
UPF1-208	ENST00000600012	PLK4	O00444	970 aa		12.78	□□□□□ -0.36
UPF1-208	ENST00000600012	WNT9A	O14904	365 aa		12.78	□□□□□ -0.36
UPF1-208	ENST00000600012	MATN3	O15232	486 aa		12.78	□□□□□ -0.36
UPF1-208	ENST00000600012	SLC7A4	O43246	635 aa		12.78	□□□□□ -0.36
UPF1-208	ENST00000600012	MTSS1	O43312	755 aa		12.78	□□□□□ -0.36
UPF1-208	ENST00000600012	ZNF189	O75820	626 aa	Predicted RBP	12.78	□□□□□ -0.36
UPF1-208	ENST00000600012	METTL18	O95568	372 aa		12.78	□□□□□ -0.36
UPF1-208	ENST00000600012	TUBB	P07437	444 aa		12.78	□□□□□ -0.36
UPF1-208	ENST00000600012	JUP	P14923	745 aa		12.78	□□□□□ -0.36
UPF1-208	ENST00000600012	H2AFX	P16104	143 aa	Predicted RBP	12.78	□□□□□ -0.36
UPF1-208	ENST00000600012	PSMB4	P28070	264 aa		12.78	□□□□□ -0.36
UPF1-208	ENST00000600012	DRD3	P35462	400 aa		12.78	□□□□□ -0.36
UPF1-208	ENST00000600012	NUDT1	P36639	197 aa		12.78	□□□□□ -0.36
UPF1-208	ENST00000600012	ACADVL	P49748	655 aa		12.78	□□□□□ -0.36
UPF1-208	ENST00000600012	STK19	P49842	368 aa	Predicted RBP	12.78	□□□□□ -0.36
UPF1-208	ENST00000600012	PLK1	P53350	603 aa		12.78	□□□□□ -0.36
UPF1-208	ENST00000600012	DRG2	P55039	364 aa	Known RBP	12.78	□□□□□ -0.36
UPF1-208	ENST00000600012	PLTP	P55058	493 aa		12.78	□□□□□ -0.36
UPF1-208	ENST00000600012	OXCT1	P55809	520 aa		12.78	□□□□□ -0.36
UPF1-208	ENST00000600012	NXPH1	P58417	271 aa		12.78	□□□□□ -0.36
UPF1-208	ENST00000600012	IFI35	P80217	286 aa	Predicted RBP	12.78	□□□□□ -0.36
UPF1-208	ENST00000600012	IL10RB	Q08334	325 aa		12.78	□□□□□ -0.36
UPF1-208	ENST00000600012	BRD3	Q15059	726 aa		12.78	□□□□□ -0.36
UPF1-208	ENST00000600012	ANKRD22	Q5VYY1	191 aa		12.78	□□□□□ -0.36
UPF1-208	ENST00000600012	NAPEPLD	Q6IQ20	393 aa		12.78	□□□□□ -0.36
UPF1-208	ENST00000600012	PID1	Q7Z2X4	250 aa		12.78	□□□□□ -0.36
UPF1-208	ENST00000600012	DSG4	Q86SJ6	1040 aa		12.78	□□□□□ -0.36
UPF1-208	ENST00000600012	LRRC49	Q8IUZ0	686 aa		12.78	□□□□□ -0.36
UPF1-208	ENST00000600012	EID2	Q8N6I1	236 aa		12.78	□□□□□ -0.36
UPF1-208	ENST00000600012	MFSD2A	Q8NA29	543 aa		12.78	□□□□□ -0.36
UPF1-208	ENST00000600012	FBXO25	Q8TCJ0	367 aa		12.78	□□□□□ -0.36
UPF1-208	ENST00000600012	CPT1B	Q92523	772 aa		12.78	□□□□□ -0.36
UPF1-208	ENST00000600012	MAML1	Q92585	1016 aa		12.78	□□□□□ -0.36
UPF1-208	ENST00000600012	FAM131C	Q96AQ9	280 aa		12.78	□□□□□ -0.36
UPF1-208	ENST00000600012	AGAP3	Q96P47	875 aa		12.78	□□□□□ -0.36
UPF1-208	ENST00000600012	KDM4C	Q9H3R0	1056 aa		12.78	□□□□□ -0.36
UPF1-208	ENST00000600012	PDF	Q9HBH1	243 aa		12.78	□□□□□ -0.36
UPF1-208	ENST00000600012	RAB6B	Q9NRW1	208 aa		12.78	□□□□□ -0.36
UPF1-208	ENST00000600012	ZDHHC18	Q9NUE0	388 aa		12.78	□□□□□ -0.36
UPF1-208	ENST00000600012	ANAPC5	Q9UJX4	755 aa		12.78	□□□□□ -0.36
UPF1-208	ENST00000600012	ACTL7A	Q9Y615	435 aa		12.78	□□□□□ -0.36
UPF1-208	ENST00000600012	PTPRQ	Q9UMZ3	2332 aa		12.77	□□□□□ -0.36
UPF1-208	ENST00000600012	TRBV21OR9-2	A0A075B6F4	123 aa	Predicted RBP	12.77	□□□□□ -0.37
UPF1-208	ENST00000600012	TBC1D3D	A0A087WVF3	549 aa		12.77	□□□□□ -0.37
UPF1-208	ENST00000600012	TBC1D3I	A0A087WXS9	549 aa		12.77	□□□□□ -0.37
UPF1-208	ENST00000600012	TBC1D3E	A0A087X179	549 aa		12.77	□□□□□ -0.37
UPF1-208	ENST00000600012	TBC1D3K	A0A087X1G2	549 aa		12.77	□□□□□ -0.37
UPF1-208	ENST00000600012	TCRBV7S3A2	A0A539	114 aa		12.77	□□□□□ -0.37
UPF1-208	ENST00000600012	CCDC151	A5D8V7	595 aa		12.77	□□□□□ -0.37
UPF1-208	ENST00000600012	TBC1D3F	A6NER0	549 aa	Predicted RBP	12.77	□□□□□ -0.37
UPF1-208	ENST00000600012	EIF4E1B	A6NMX2	242 aa	Known RBP	12.77	□□□□□ -0.37
UPF1-208	ENST00000600012	TBC1D3L	B9A6J9	549 aa		12.77	□□□□□ -0.37
UPF1-208	ENST00000600012	TP73	O15350	636 aa		12.77	□□□□□ -0.37
UPF1-208	ENST00000600012	SNAP91	O60641	907 aa		12.77	□□□□□ -0.37

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