RNA–Protein interactions for RNA: ENST00000598471.1

UPF1-206, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 582 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-206ENST00000598471 STX7O15400 261 aaKnown RBP15.49■□□□□ 0.07
UPF1-206ENST00000598471 LDB2O43679 373 aa15.49■□□□□ 0.07
UPF1-206ENST00000598471 OPA1O60313 960 aa15.49■□□□□ 0.07
UPF1-206ENST00000598471 SASH3O75995 380 aa15.49■□□□□ 0.07
UPF1-206ENST00000598471 ALDH1A2O94788 518 aa15.49■□□□□ 0.07
UPF1-206ENST00000598471 SLC4A1P02730 911 aa15.49■□□□□ 0.07
UPF1-206ENST00000598471 SHBGP04278 402 aa15.49■□□□□ 0.07
UPF1-206ENST00000598471 ALPIP09923 528 aa15.49■□□□□ 0.07
UPF1-206ENST00000598471 HNF1BP35680 557 aa15.49■□□□□ 0.07
UPF1-206ENST00000598471 PRAMEP78395 509 aa15.49■□□□□ 0.07
UPF1-206ENST00000598471 CCDC15Q0P6D6 951 aa15.49■□□□□ 0.07
UPF1-206ENST00000598471 ARHGEF7Q14155 803 aa15.49■□□□□ 0.07
UPF1-206ENST00000598471 UGP2Q16851 508 aa15.49■□□□□ 0.07
UPF1-206ENST00000598471 KRT71Q3SY84 523 aa15.49■□□□□ 0.07
UPF1-206ENST00000598471 CEP85LQ5SZL2 805 aa15.49■□□□□ 0.07
UPF1-206ENST00000598471 PARS2Q7L3T8 475 aaKnown RBP15.49■□□□□ 0.07
UPF1-206ENST00000598471 TTC7BQ86TV6 843 aa15.49■□□□□ 0.07
UPF1-206ENST00000598471 RASSF3Q86WH2 238 aa15.49■□□□□ 0.07
UPF1-206ENST00000598471 MMAAQ8IVH4 418 aaKnown RBP15.49■□□□□ 0.07
UPF1-206ENST00000598471 CNPY4Q8N129 248 aa15.49■□□□□ 0.07
UPF1-206ENST00000598471 NELL2Q99435 816 aa15.49■□□□□ 0.07
UPF1-206ENST00000598471 C19orf43Q9BQ61 176 aa15.49■□□□□ 0.07
UPF1-206ENST00000598471 TRIM56Q9BRZ2 755 aaKnown RBP15.49■□□□□ 0.07
UPF1-206ENST00000598471 TMEM109Q9BVC6 243 aa15.49■□□□□ 0.07
UPF1-206ENST00000598471 RSPH9Q9H1X1 276 aaPredicted RBP15.49■□□□□ 0.07
UPF1-206ENST00000598471 ZFYVE1Q9HBF4 777 aa15.49■□□□□ 0.07
UPF1-206ENST00000598471 TREX1Q9NSU2 369 aa15.49■□□□□ 0.07
UPF1-206ENST00000598471 C20orf96Q9NUD7 363 aaPredicted RBP15.49■□□□□ 0.07
UPF1-206ENST00000598471 NSMCE4AQ9NXX6 385 aa15.49■□□□□ 0.07
UPF1-206ENST00000598471 FETUBQ9UGM5 382 aa15.49■□□□□ 0.07
UPF1-206ENST00000598471 RABGEF1Q9UJ41 708 aa15.49■□□□□ 0.07
UPF1-206ENST00000598471 ARL5AQ9Y689 179 aa15.49■□□□□ 0.07
UPF1-206ENST00000598471 IKBKGQ9Y6K9 419 aa15.49■□□□□ 0.07
UPF1-206ENST00000598471 ANKRD36A6QL64 1941 aa15.49■□□□□ 0.07
UPF1-206ENST00000598471 MYO10Q9HD67 2058 aa15.48■□□□□ 0.07
UPF1-206ENST00000598471 VCANP13611 3396 aa15.48■□□□□ 0.07
UPF1-206ENST00000598471 RASGRF2O14827 1237 aa15.48■□□□□ 0.07
UPF1-206ENST00000598471 TCEA3O75764 348 aa15.48■□□□□ 0.07
UPF1-206ENST00000598471 RPP40O75818 363 aaKnown RBP15.48■□□□□ 0.07
UPF1-206ENST00000598471 CHRM1P11229 460 aaPredicted RBP15.48■□□□□ 0.07
UPF1-206ENST00000598471 TIMP2P16035 220 aa15.48■□□□□ 0.07
UPF1-206ENST00000598471 ZNF30P17039 623 aa15.48■□□□□ 0.07
UPF1-206ENST00000598471 CD72P21854 359 aa15.48■□□□□ 0.07
UPF1-206ENST00000598471 VIPR1P32241 457 aa15.48■□□□□ 0.07
UPF1-206ENST00000598471 HADHAP40939 763 aa15.48■□□□□ 0.07
UPF1-206ENST00000598471 NEK3P51956 506 aa15.48■□□□□ 0.07
UPF1-206ENST00000598471 ZNF140P52738 457 aaPredicted RBP15.48■□□□□ 0.07
UPF1-206ENST00000598471 ZNF844Q08AG5 666 aa15.48■□□□□ 0.07
UPF1-206ENST00000598471 ELP6Q0PNE2 266 aa15.48■□□□□ 0.07
UPF1-206ENST00000598471 SFSWAPQ12872 951 aaKnown RBP15.48■□□□□ 0.07
UPF1-206ENST00000598471 THOC5Q13769 683 aaKnown RBP15.48■□□□□ 0.07
UPF1-206ENST00000598471 CST6Q15828 149 aa15.48■□□□□ 0.07
UPF1-206ENST00000598471 CNGA3Q16281 694 aa15.48■□□□□ 0.07
UPF1-206ENST00000598471 POM121L1PQ3SYA9 428 aa15.48■□□□□ 0.07
UPF1-206ENST00000598471 ESRP1Q6NXG1 681 aaKnown RBP15.48■□□□□ 0.07
UPF1-206ENST00000598471 FBXL19Q6PCT2 694 aa15.48■□□□□ 0.07
UPF1-206ENST00000598471 LYSMD3Q7Z3D4 306 aa15.48■□□□□ 0.07
UPF1-206ENST00000598471 KCNMB4Q86W47 210 aa15.48■□□□□ 0.07
UPF1-206ENST00000598471 CTAGE3PQ8IX95 158 aa15.48■□□□□ 0.07
UPF1-206ENST00000598471 RIBC1Q8N443 379 aaPredicted RBP15.48■□□□□ 0.07
UPF1-206ENST00000598471 TTC30BQ8N4P2 665 aa15.48■□□□□ 0.07
UPF1-206ENST00000598471 MDGA1Q8NFP4 955 aa15.48■□□□□ 0.07
UPF1-206ENST00000598471 OR2W6PQ8NHA6 318 aa15.48■□□□□ 0.07
UPF1-206ENST00000598471 RPLP0P6Q8NHW5 317 aa15.48■□□□□ 0.07
UPF1-206ENST00000598471 CALML6Q8TD86 181 aa15.48■□□□□ 0.07
UPF1-206ENST00000598471 FCRL3Q96P31 734 aaPredicted RBP15.48■□□□□ 0.07
UPF1-206ENST00000598471 FAM167BQ9BTA0 163 aa15.48■□□□□ 0.07
UPF1-206ENST00000598471 EPHX3Q9H6B9 360 aa15.48■□□□□ 0.07
UPF1-206ENST00000598471 PLAC1Q9HBJ0 212 aa15.48■□□□□ 0.07
UPF1-206ENST00000598471 NLE1Q9NVX2 485 aaPredicted RBP15.48■□□□□ 0.07
UPF1-206ENST00000598471 POLR3BQ9NW08 1133 aaPredicted RBP15.48■□□□□ 0.07
UPF1-206ENST00000598471 MOCS1Q9NZB8 636 aa15.48■□□□□ 0.07
UPF1-206ENST00000598471 ZFATQ9P243 1243 aa15.48■□□□□ 0.07
UPF1-206ENST00000598471 TXNDC16Q9P2K2 825 aa15.48■□□□□ 0.07
UPF1-206ENST00000598471 SLC24A2Q9UI40 661 aa15.48■□□□□ 0.07
UPF1-206ENST00000598471 NFS1Q9Y697 457 aa15.48■□□□□ 0.07
UPF1-206ENST00000598471 ANTXRLA6NF34 631 aa15.47■□□□□ 0.07
UPF1-206ENST00000598471 NPIPB15A6NHN6 443 aaPredicted RBP15.47■□□□□ 0.07
UPF1-206ENST00000598471 FAM159BA6NKW6 160 aa15.47■□□□□ 0.07
UPF1-206ENST00000598471 SHISA7A6NL88 538 aa15.47■□□□□ 0.07
UPF1-206ENST00000598471 POC1B-GALNT4F8VUJ3 575 aa15.47■□□□□ 0.07
UPF1-206ENST00000598471 SLC7A4O43246 635 aa15.47■□□□□ 0.07
UPF1-206ENST00000598471 VAPBO95292 243 aa15.47■□□□□ 0.07
UPF1-206ENST00000598471 INHBAP08476 426 aa15.47■□□□□ 0.07
UPF1-206ENST00000598471 MYZAPP0CAP1 466 aa15.47■□□□□ 0.07
UPF1-206ENST00000598471 C5AR1P21730 350 aa15.47■□□□□ 0.07
UPF1-206ENST00000598471 HMGCLP35914 325 aa15.47■□□□□ 0.07
UPF1-206ENST00000598471 MSH2P43246 934 aa15.47■□□□□ 0.07
UPF1-206ENST00000598471 STARD6P59095 220 aa15.47■□□□□ 0.07
UPF1-206ENST00000598471 SATB1Q01826 763 aa15.47■□□□□ 0.07
UPF1-206ENST00000598471 ACVR1Q04771 509 aa15.47■□□□□ 0.07
UPF1-206ENST00000598471 UBXN2BQ14CS0 331 aa15.47■□□□□ 0.07
UPF1-206ENST00000598471 KBTBD12Q3ZCT8 623 aa15.47■□□□□ 0.07
UPF1-206ENST00000598471 HSP90B2PQ58FF3 399 aa15.47■□□□□ 0.07
UPF1-206ENST00000598471 TRMT10BQ6PF06 316 aaKnown RBP15.47■□□□□ 0.07
UPF1-206ENST00000598471 ERN2Q76MJ5 926 aaKnown RBP15.47■□□□□ 0.07
UPF1-206ENST00000598471 DPPA4Q7L190 304 aa15.47■□□□□ 0.07
UPF1-206ENST00000598471 LRRC6Q86X45 466 aa15.47■□□□□ 0.07
UPF1-206ENST00000598471 LMNTD2Q8IXW0 634 aa15.47■□□□□ 0.07
UPF1-206ENST00000598471 OR4K2Q8NGD2 314 aa15.47■□□□□ 0.07
Retrieved 100 of 20,778 RNA–protein pairs in 38.8 ms