RNA–Protein interactions for RNA: ENST00000596842.5

UPF1-204, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 2

Gene UPF1, Length 3,825 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-204ENST00000596842 VPS33AQ96AX1 596 aa15.31■□□□□ 0.04
UPF1-204ENST00000596842 GPR78Q96P69 363 aa15.31■□□□□ 0.04
UPF1-204ENST00000596842 SEMA4BQ9NPR2 832 aaPredicted RBP15.31■□□□□ 0.04
UPF1-204ENST00000596842 CNGB3Q9NQW8 809 aa15.31■□□□□ 0.04
UPF1-204ENST00000596842 IPO11Q9UI26 975 aaKnown RBP15.31■□□□□ 0.04
UPF1-204ENST00000596842 GJB3O75712 270 aa15.31■□□□□ 0.04
UPF1-204ENST00000596842 ATP6V1B2P21281 511 aa15.31■□□□□ 0.04
UPF1-204ENST00000596842 PTGR2Q8N8N7 351 aaPredicted RBP15.31■□□□□ 0.04
UPF1-204ENST00000596842 SMG8Q8ND04 991 aaKnown RBP15.31■□□□□ 0.04
UPF1-204ENST00000596842 SHCBP1Q8NEM2 672 aa15.31■□□□□ 0.04
UPF1-204ENST00000596842 HMGCLL1Q8TB92 370 aa15.31■□□□□ 0.04
UPF1-204ENST00000596842 VAT1Q99536 393 aa15.31■□□□□ 0.04
UPF1-204ENST00000596842 ZNF696Q9H7X3 374 aa15.31■□□□□ 0.04
UPF1-204ENST00000596842 RRN3Q9NYV6 651 aa15.31■□□□□ 0.04
UPF1-204ENST00000596842 EBF1Q9UH73 591 aa15.31■□□□□ 0.04
UPF1-204ENST00000596842 TBC1D30Q9Y2I9 924 aa15.31■□□□□ 0.04
UPF1-204ENST00000596842 HTRA2O43464 458 aaPredicted RBP15.3■□□□□ 0.04
UPF1-204ENST00000596842 PGFP49763 221 aa15.3■□□□□ 0.04
UPF1-204ENST00000596842 GEMP55040 296 aa15.3■□□□□ 0.04
UPF1-204ENST00000596842 YBX1P67809 324 aaKnown RBP15.3■□□□□ 0.04
UPF1-204ENST00000596842 SQLEQ14534 574 aa15.3■□□□□ 0.04
UPF1-204ENST00000596842 HECTD2Q5U5R9 776 aa15.3■□□□□ 0.04
UPF1-204ENST00000596842 ALKAL1Q6UXT8 129 aa15.3■□□□□ 0.04
UPF1-204ENST00000596842 CPSF7Q8N684 471 aaKnown RBP15.3■□□□□ 0.04
UPF1-204ENST00000596842 MAGEE2Q8TD90 523 aaPredicted RBP15.3■□□□□ 0.04
UPF1-204ENST00000596842 FBXL20Q96IG2 436 aa15.3■□□□□ 0.04
UPF1-204ENST00000596842 SLC25A23Q9BV35 468 aa15.3■□□□□ 0.04
UPF1-204ENST00000596842 RNF181Q9P0P0 153 aa15.3■□□□□ 0.04
UPF1-204ENST00000596842 GTF2IRD1Q9UHL9 959 aa15.3■□□□□ 0.04
UPF1-204ENST00000596842 CDC14AQ9UNH5 594 aa15.3■□□□□ 0.04
UPF1-204ENST00000596842 PHF24Q9UPV7 400 aa15.3■□□□□ 0.04
UPF1-204ENST00000596842 F9P00740 461 aa15.3■□□□□ 0.04
UPF1-204ENST00000596842 DSC2Q02487 901 aa15.3■□□□□ 0.04
UPF1-204ENST00000596842 CYP51A1Q16850 503 aa15.3■□□□□ 0.04
UPF1-204ENST00000596842 SAMD4BQ5PRF9 694 aaKnown RBP15.3■□□□□ 0.04
UPF1-204ENST00000596842 GPR107Q5VW38 600 aa15.3■□□□□ 0.04
UPF1-204ENST00000596842 GPR141Q7Z602 305 aa15.3■□□□□ 0.04
UPF1-204ENST00000596842 VPS50Q96JG6 964 aa15.3■□□□□ 0.04
UPF1-204ENST00000596842 RGS18Q9NS28 235 aa15.3■□□□□ 0.04
UPF1-204ENST00000596842 MIOSQ9NXC5 875 aa15.3■□□□□ 0.04
UPF1-204ENST00000596842 CEPT1Q9Y6K0 416 aa15.3■□□□□ 0.04
UPF1-204ENST00000596842 RRN3P2A6NIE6 340 aa15.3■□□□□ 0.04
UPF1-204ENST00000596842 WARSP23381 471 aaKnown RBP15.3■□□□□ 0.04
UPF1-204ENST00000596842 FOXA1P55317 472 aa15.3■□□□□ 0.04
UPF1-204ENST00000596842 PRKCQQ04759 706 aa15.3■□□□□ 0.04
UPF1-204ENST00000596842 DUSP28Q4G0W2 176 aa15.3■□□□□ 0.04
UPF1-204ENST00000596842 MIB1Q86YT6 1006 aa15.3■□□□□ 0.04
UPF1-204ENST00000596842 TOP6BLQ8N6T0 577 aa15.3■□□□□ 0.04
UPF1-204ENST00000596842 SLCO4A1Q96BD0 722 aa15.3■□□□□ 0.04
UPF1-204ENST00000596842 THAP11Q96EK4 314 aa15.3■□□□□ 0.04
UPF1-204ENST00000596842 C1orf50Q9BV19 199 aa15.3■□□□□ 0.04
UPF1-204ENST00000596842 OSBPL11Q9BXB4 747 aa15.3■□□□□ 0.04
UPF1-204ENST00000596842 ARMC7Q9H6L4 198 aa15.3■□□□□ 0.04
UPF1-204ENST00000596842 AKTIPQ9H8T0 292 aa15.3■□□□□ 0.04
UPF1-204ENST00000596842 A0A0J9YVX5 310 aa15.29■□□□□ 0.04
UPF1-204ENST00000596842 UBXN8O00124 270 aa15.29■□□□□ 0.04
UPF1-204ENST00000596842 UBFD1O14562 309 aaKnown RBP15.29■□□□□ 0.04
UPF1-204ENST00000596842 THP07101 528 aa15.29■□□□□ 0.04
UPF1-204ENST00000596842 PRSS56P0CW18 603 aa15.29■□□□□ 0.04
UPF1-204ENST00000596842 ENTPD1P49961 510 aa15.29■□□□□ 0.04
UPF1-204ENST00000596842 ARSDP51689 593 aa15.29■□□□□ 0.04
UPF1-204ENST00000596842 APLP1P51693 650 aa15.29■□□□□ 0.04
UPF1-204ENST00000596842 GRB7Q14451 532 aa15.29■□□□□ 0.04
UPF1-204ENST00000596842 HMBOX1Q6NT76 420 aa15.29■□□□□ 0.04
UPF1-204ENST00000596842 TMEM214Q6NUQ4 689 aaKnown RBP15.29■□□□□ 0.04
UPF1-204ENST00000596842 CIR1Q86X95 450 aaPredicted RBP15.29■□□□□ 0.04
UPF1-204ENST00000596842 SLC16A10Q8TF71 515 aa15.29■□□□□ 0.04
UPF1-204ENST00000596842 NTAN1Q96AB6 310 aa15.29■□□□□ 0.04
UPF1-204ENST00000596842 C19orf60Q96EN9 201 aa15.29■□□□□ 0.04
UPF1-204ENST00000596842 TBATAQ96M53 351 aa15.29■□□□□ 0.04
UPF1-204ENST00000596842 SARS2Q9NP81 518 aaKnown RBP15.29■□□□□ 0.04
UPF1-204ENST00000596842 MARCH4Q9P2E8 410 aaPredicted RBP15.29■□□□□ 0.04
UPF1-204ENST00000596842 VWA7Q9Y334 891 aa15.29■□□□□ 0.04
UPF1-204ENST00000596842 J3KR12 359 aa15.29■□□□□ 0.04
UPF1-204ENST00000596842 PCNAP12004 261 aa15.29■□□□□ 0.04
UPF1-204ENST00000596842 YWHAHQ04917 246 aaPredicted RBP15.29■□□□□ 0.04
UPF1-204ENST00000596842 SEMA3BQ13214 749 aa15.29■□□□□ 0.04
UPF1-204ENST00000596842 LPIN1Q14693 890 aa15.29■□□□□ 0.04
UPF1-204ENST00000596842 MFSD10Q14728 455 aa15.29■□□□□ 0.04
UPF1-204ENST00000596842 SMARCD1Q96GM5 515 aa15.29■□□□□ 0.04
UPF1-204ENST00000596842 SP110Q9HB58 689 aa15.29■□□□□ 0.04
UPF1-204ENST00000596842 IGSF5Q9NSI5 407 aa15.29■□□□□ 0.04
UPF1-204ENST00000596842 TARM1B6A8C7 271 aa15.29■□□□□ 0.04
UPF1-204ENST00000596842 F8W810 466 aa15.29■□□□□ 0.04
UPF1-204ENST00000596842 PIP5K1BO14986 540 aa15.29■□□□□ 0.04
UPF1-204ENST00000596842 FAM163BP0C2L3 166 aa15.29■□□□□ 0.04
UPF1-204ENST00000596842 HGFP14210 728 aa15.29■□□□□ 0.04
UPF1-204ENST00000596842 ARCN1P48444 511 aaKnown RBP15.29■□□□□ 0.04
UPF1-204ENST00000596842 CBLBQ13191 982 aa15.29■□□□□ 0.04
UPF1-204ENST00000596842 LRP8Q14114 963 aa15.29■□□□□ 0.04
UPF1-204ENST00000596842 ZNF792Q3KQV3 632 aa15.29■□□□□ 0.04
UPF1-204ENST00000596842 UBXN11Q5T124 520 aa15.29■□□□□ 0.04
UPF1-204ENST00000596842 RETREG3Q86VR2 466 aa15.29■□□□□ 0.04
UPF1-204ENST00000596842 PCYOX1LQ8NBM8 494 aa15.29■□□□□ 0.04
UPF1-204ENST00000596842 PDZD8Q8NEN9 1154 aa15.29■□□□□ 0.04
UPF1-204ENST00000596842 SLC9A7Q96T83 725 aa15.29■□□□□ 0.04
UPF1-204ENST00000596842 TINF2Q9BSI4 451 aa15.29■□□□□ 0.04
UPF1-204ENST00000596842 OAZ3Q9UMX2 235 aa15.29■□□□□ 0.04
UPF1-204ENST00000596842 SUPT3HB4E1H0 165 aa15.28■□□□□ 0.04
UPF1-204ENST00000596842 IL10P22301 178 aa15.28■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms